Typing tool
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Typing tool
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Complete norovirus genomes
| LC769703 | GII.13 | |
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| GII.P16 |
ORF1: 1..5094
ORF2: 5075..6703
ORF3: 6703..7434
LOCUS LC769703 7470 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2018/GII.13[P16]/NICED-IDH-11808, nearly
complete genome.
ACCESSION LC769703
VERSION LC769703.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7470)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7470
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus
GII/Hu/IN/2018/GII.13[P16]/NICED-IDH-11808"
/isolate="Hu/IN/2018/GII.13[P16]/NICED-IDH-11808"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2018-09-05"
/note="genotype: GII.13[P16]"
gene <1..5094
/gene="POL"
CDS <1..5094
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74153.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDEPQKPPRPPTPELVKKIPPPPPNGEEGEEPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK
IKPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLK
HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP
KPKDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGNLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGNEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGITFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5075..6703
/gene="VP1"
CDS 5075..6703
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74154.1"
/translation="MKMASNDAAPSNDGAASLVPEAINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANSGDNWDQNLLQLTYPSGASYDPTDEVPAPLGTQDFSGILYG
VLTQDNVSEGTGEAKNAKGVYISTTSGRFTPKIGTIGLHSITENVHPNQQSRFTPVGV
AQNENTPFQQWVLPHYAGALALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLQGRDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGTYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6703..7434
/gene="VP2"
CDS 6703..7434
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74155.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSAQTTSYSGQFTPSPVHRAQVKSPSNSSQRTAAPSSIRSLSTQSTSLGSTS
SGGSSTASSSSRTADWVQQQRALSPYMQGALQTAYVTPPSSRASSMSSVSTVPKGVLD
SWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa
61 tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc cctcggggct
121 aggcccaaac agcctgcccc gagagacgaa ccacaaaagc ccccaagacc accaactccc
181 gagttggtca agaagatacc ccctcctcca cctaatggcg aagaaggaga agaaccagtc
241 atcaggtatg aggttaagag tgggatctct ggcctgcccg agctcacaac agtcccccag
301 ccggacgtgg ccaacacagc attcagtgtt ccaccactga gcttgagaga aaacagggag
361 gccaaggagc cactaacagg ggcaatatta gagatgtggg atggagagat ataccactat
421 ggcctgtacg tggagaaagg tttagtgttg ggtgtgcaca aaccacctgc agccataagc
481 atggcaagag tggagctgac gccgctgtca ttgtactggc gtgtggtgta cactccccaa
541 tacctcatct cccctgaaac tctcaggagg ctcaacgggg aggcgttccc ttacaccgcc
601 ttcgacaaca actgctatgc cttttgctgc tgggtgttag acctcaatga ctcatggctt
661 agcaggagga tggtacaaag aacaacgggc ttcttcagac cctaccaaga gtggaataga
721 aaacccctgc ctaccatgga tgactccaaa attaagaagg tagcaaatat attcctatgt
781 tcattgtcca cattattcac cagacccata aaagacctca taggaaaaat taaaccatta
841 aacatattga acatcctggc aacgtgtgac tggacgtttg ccggaatagt ggagtctctg
901 atattatttg ctgaactctt cggagttttc tggacacccc cagatgtgtc tgctatgatc
961 gctcccttac ttggggacta cgagttgcaa gggccagaag acctcgccgt tgaactcgta
1021 cctgtggtaa tgggagggat tggtttggtg ttgggattca ccaaagagaa aattggcaaa
1081 atgttgtcct cagcagcgtc aacacttagg gcttgcaaag atcttggtgc ctatggctta
1141 gagatactca aattggtcat gaagtggttc ttcccaaaga aagaggaggc caatgagcta
1201 gccatggtga gggccataga ggatgccgta ctagatcttg aggcaataga aaataaccac
1261 atgacaaccc tgttgaaaga caaagacagc ttagcaacat acatgaaaac actggacatg
1321 gaggaggaga aagccagaag gttgtccaca aaatctgcat cccctgacat agttgggaca
1381 atcaacgccc tgctggctcg aatagcagcg gccaggtcat tagtccacag ggccaaggaa
1441 gagctatcta gcaggataag accagtagtt gttatgatat ctggcaaacc aggaataggc
1501 aaaactcacc tggccaggga ggtggcaagg aaggtggcat ccactctcac aggggatcaa
1561 agagtcggac tcataccaag aaacggtgtg gaccattggg atgcatacaa aggtgagaga
1621 gtcgtgctgt gggacgacta tggcatgagt aaccccattc atgatgctct tcgcatacaa
1681 gaattggctg atacgtgtcc ccttacctta aattgtgaca gaattgaaaa taagggaaaa
1741 gtttttgaca gtgaagtcat aataattaca acaaaccttg ccaatccagc cccacttgat
1801 tatgtcaact ttgaggcctg ttccaggaga attgatttct tggtgtacgc tgaggcacca
1861 gaagtagaaa aggcaaaacg ggactttcct ggtcagccag atatgtggaa ggacgccttc
1921 aagccggact tttcacacat caagctacag cttgcacctc agggtggctt tgacaagaat
1981 ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggttc tctgattgcc
2041 cgcgcatcag gcctgctgca tgagaggatg gatgaatttg aactccaagg tcccacaatc
2101 accaccttca atttcgaccg gaacaggatc acagcattca gacaattggc tgcagaaaac
2161 aagtatggat tggtggacac catgaaagtt ggcaatcaac taaaaggagt gaaaaccatg
2221 gaagaactca aacaagcaat caggaatgtg accatcaaga ggtgccggat catctacggt
2281 ggctctacgt atgaccttga atccgatggc aagggcaagg ttttggtgga aaaggtcaag
2341 aacacctctg tacagaccaa caacgagttg gccggggccc tgcaccatct caaacacgcc
2401 cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct actccatcat acaaattgcc
2461 ggcgctgcgt ttgtcaccac gcgcattgca cgccgcatga acatacaaga actctggtcg
2521 aagccacaat tagatcaaaa tgaatcagag actaaggaag aggcccccaa gccaaaagat
2581 gacgagttca tcatatcttc taaggacatc aaggaggaag gaaagaaggg caaaaacaaa
2641 actggccgtg gcaagaaaca cactgcattc tccagcaagg gcttgagcga tgaggagtat
2701 gacgagtaca agaggataag agaagagaga aatggaaagt actctataga ggagtatctt
2761 caagacaggg acaggtacta tgaggagctt gccattgcca aggccacgga agaagacttc
2821 tgtgaagagg aggagatcaa aatccgtcag agaattttcc gtcccaccag gaaacaaaga
2881 aaggaagaga gggctacatt agggctagta acaggttcag aaatcagaaa aagaaaccct
2941 gatgacttta aacccaaagg aaatctgtgg gctgatgaca acagaagtgt tgactacaat
3001 gagaaactgg actttgaggc ccccccaagc atatggtcta ggattgtgag ctttggttcc
3061 ggctggggct tctgggtgtc accaagcctg ttcataacgt caactcatgt aatccccgca
3121 ggtataacag aagcatttgg agtccccatc aaacaaattc aggtccacaa atcaggtgaa
3181 ttttgccgat tcagattccc aaagccaatt agaccagatg tgacaggaat gatcttggaa
3241 gaaggtgcgc ctgaaggcac cgtggcaact gtgctcatca aacgccccac cggagagctc
3301 atgcctcttg cagccaggat gggaacacac gcaaccatga aaattcaagg ccgcatggtt
3361 ggcggacaga tgggtatgtt gctcactgga tcaaatgcta aaggaatgga tttgggaaca
3421 actcctggtg actgtggctg cccttacatc tataaaaggg gcaatgacta tatagtcatc
3481 ggggtgcaca ctgcggcagc ccgtggtgga aacaccgtca tctgtgccac acaagggaat
3541 gagggtgagg caactcttga gggtggggat gataaaggaa catactgtgg agcacccatt
3601 ctaggccctg ggggtgcacc aaaattgagc accaaaacca aattttggag gtcatcgaac
3661 acgcccctcc caccagggac atatgagcct gcctacctcg gtggccgtga tccgcgtgtt
3721 aagggtgggc cctccttgca gcaggtaatg agagaccagt tgaagccatt cactgagccc
3781 aggggcaaac ctccaagacc aagtgtattg gaagcagcca aacaaaccat tatcaatgtc
3841 ctcgagcaaa ccctggaccc tccacaaaaa tggacatacg cacaggcgtg tgcctcactt
3901 gacaaaacca cctccagcgg gcatccccat cacgtccgaa agaatgaatt ctggaatggt
3961 gagactttca ctggtaaatt ggcagaccaa gcatcaaaag caaacctaat gtttgaggaa
4021 gggaaacaca tgacaccagt gtacacagca gcacttaagg acgagctagt caagactgag
4081 aaaatctatg gaaagatcaa gaagagactg ctctggggct ctgacttgtc caccatgatc
4141 cggtgcgcta ggtcatttgg tgggctcatg gacgagatga aggcgcactg catatcactc
4201 ccagtacgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga gaaacattcc
4261 agatacacgt accactatga tgcagactac tctcgttggg attcaacaca acagagggca
4321 gtactagcag cagccttgga aatcatggtc agattctctg cagaaccaca attggcacaa
4381 atagtcgctg aggatctgct ggcccctagt gtagtagatg taggagactt taaaatcaca
4441 ataaatgaag ggctcccatc tggtgtgcca tgcacttctc aatggaactc catcgcacac
4501 tggttgctaa ctctctgtgc tttgtctgaa gtcaccaaac tgtcccctga cattatacaa
4561 gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga cataaaattg
4621 gaccctgaac agttaactgc caagttgaag gagtacggcc tgaaaccaac ccgcccagac
4681 aagaccgagg gacccctgat catcagtgaa gatttgaacg gaatcacttt cctccgaagg
4741 acggtgactc gtgacccagc tggctggttt ggaaaactgg accaaagctc aattttgagg
4801 cagatgtact ggactagagg accaaatcat gaagacccca atgagacaat gataccccat
4861 tctcaaagac ccatacagct catggcactg cttggtgaag cctctcttca cgggccctct
4921 ttctacagta aaatcagtaa attggtcata actgaactca aagaaggtgg gatggatttt
4981 tacgtgccaa gacaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg
5041 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatcgaat gatggtgcag ctagtctcgt accagaggcc attaatgaga ctatgccatt
5161 ggaacccgtt gctggtgcat ctattgctgc cccagtggcg ggacaaacta atataattga
5221 cccctggata agaacaaatt ttgtgcaagc ccctaatgga gaatttacag tgtcacccag
5281 aaattcccct ggagagatcc tattaaattt agagttggga ccggatttga atccttattt
5341 ggcccatcta tcaaggatgt acaatggata tgctggaggc gttgaggtgc aagtgcttct
5401 tgctgggaac gcgttcacag caggaaagat attatttgca gcaatccctc ccaactttcc
5461 tgtagatatg attagtccag ctcaaattac tatgcttccc catttgattg tagatgtcag
5521 gacattggaa cctattatga tacccttacc tgatgttagg aatgtgttct atcattttaa
5581 taatcaaccc caacctagga tgagattagt ggctatgctc tacaccccat tgagatctaa
5641 tggttcagga gatgatgttt tcactgtgtc ttgtagagtg ttgactaggc caactcctga
5701 ttttgaattc atctacctag tgcctccctc tgtagagtcc aaaactaaac cattcacact
5761 cccaatattg accatctctg aactgaccaa ctcccggttc cccatcccaa tcgagcaact
5821 gtacacggcc ccaaatgaga ataatgttgt acagtgtcaa aatggaaggt gcaccttgga
5881 tggagagctt cagggcacca cccagctgct atcaagtgca gtttgctctt acaggggcag
5941 gactgtggct aacagtgggg acaattggga ccagaacttg ctccagctga cctacccaag
6001 tggtgcaagc tatgacccca ctgatgaagt accagcaccc ttgggcaccc aagattttag
6061 tgggatattg tatggggtgt taactcaaga taatgtgagt gagggaacag gggaggccaa
6121 aaatgccaag ggagtgtaca tatccaccac cagtggaaga ttcaccccaa aaattgggac
6181 aattggactg cattcaataa ctgaaaatgt gcaccccaat cagcaatcac ggttcactcc
6241 cgttggggtc gcccagaacg aaaacacccc cttccaacaa tgggttctac cacactacgc
6301 aggtgctctt gctctaaaca ccaatttggc acccgctgtt gccccgactt tccctggcga
6361 gcaattgctg tttttcaggt cccgtgttcc atgtgttcaa ggtctgcagg ggcgggatgc
6421 ttttatagac tgtctcctac ctcaagagtg ggtgaaccat ttttatcaag aggctgctcc
6481 ctcccaagca gatgtcgccc tcatcaggta tgttaaccct gatactggtc gcacgctgtt
6541 tgaggccaaa ttgcacaggt caggttttat tactgtgtca cacactggca cctaccctct
6601 tgtggtcccc ccgaatggtc attttaggtt tgattcttgg gttaaccaat tctactcact
6661 cgcccccatg ggaactggca atgggcgcag aagagttcaa taatggcagg agcatttata
6721 gctggtctag ctggtgacat gctgacttct gctgttggtt cactgacctc tgcaggagcc
6781 aatgccatca atcagaaatt gaattttgat tataataagc aactccaaaa tgcatccttt
6841 caacatgata aggaaatgtt gcaggcccaa attgatgcta caaagaagct ccaatcagaa
6901 atgattgcaa tcaagcatgg ggttttgacc gcgggcggct tttccccagc cgatgcagcc
6961 agaggggcag tcaacgcccc aatgactcga gtgttggatt ggtcagggac acgctactat
7021 gctccaaatt ctgcgcaaac caccagttat tctgggcaat tcaccccctc gccagtccat
7081 cgggcgcagg tgaagtcccc ttccaattca tcccagcgga ctgcagctcc aagcagtatc
7141 cgcagcctgt caacccaatc aacttcttta ggctccacct cctcaggggg gtcctctaca
7201 gcctcctcta gttcaagaac agcagattgg gtgcaacagc aaagggctct tagcccgtac
7261 atgcagggag ctctgcaaac ggcatacgtc acaccgccgt ctagtagggc ttccagtatg
7321 agctctgtct caacagtgcc caaaggggtt ttggactcct ggacacctgt gtttaacaca
7381 cgcaggcagc cgctgtttgc acacctcagg aagagggggg agtcacaggc atagtgaaaa
7441 ggataatcaa cttttaaaat gtgattttat
//