Typing tool
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Typing tool
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Complete norovirus genomes
| LC769702 | GII.16 | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6695
ORF3: 6695..7492
LOCUS LC769702 7521 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2021/GII.16[P16]/NICED-BCH-12629, nearly
complete genome.
ACCESSION LC769702
VERSION LC769702.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7521)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7521
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus
GII/Hu/IN/2021/GII.16[P16]/NICED-BCH-12629"
/isolate="Hu/IN/2021/GII.16[P16]/NICED-BCH-12629"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2021-02-01"
/note="genotype: GII.16[P16]"
gene <1..5092
/gene="POL"
CDS <1..5092
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74150.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPDTLRRLSGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSESETKEEALK
SEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPPGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5073..6695
/gene="VP1"
CDS 5073..6695
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74151.1"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQSEPRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDALYTSPNDTIVVQPQNGRATIDGELLGTT
QLLPNGICSFRGRITAHLQEDNHLWHVQVTNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VVSQRDLGSNNPANRSHDAVVPTYSAKFTPKLGSVQIGTWDTNDLQLQPVKFTPVGLN
EVGDGKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGFGNPYID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHREGFITVASTENRPVT
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6695..7492
/gene="VP2"
CDS 6695..7492
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74152.1"
/translation="MAGAFIAGLAGDIVTNSVGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMISIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGASRTTSFSGGFTNTTRARTVESPKSSPPAYSALASASRPSSTVSSSSTRST
VVTNSSAASSTRSSVTRNSSRNIPQSVSSVSSRTSDWVQNQNRMLEPYLKGSLQTAFV
SPPSSKASSNGTVSTVPKEILDSWTSAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 ggcgtctaac gacgctaccg ttgccgttgc ttgcaacaac aacaacgaca aggaaaaatc
61 ttcaggtgaa ggcttattta caaatatgtc ttccacctta aagaaagccc tcggggctag
121 gcccaaacag cctgccccga gagacaaacc acaaaagccc ccaagaccac caactcccga
181 gttggtcaag aggatacccc ctcctccacc taatggcgaa gaagaagaag aaccagtcat
241 taggtatgag gttaagagcg ggatctctgg cctgcccgag ctcacaacag tcccccaacc
301 ggacgtggcc aacacagcgt tcagtgttcc accactgagc ttgagagaaa acagggaggc
361 caaggaaccg ctaacagggg caatattaga gatgtgggat ggggagatat accactatgg
421 cctatacgtg gagaaaggcc tagtgttggg tgtgcacaaa ccacctgcag ccataagcat
481 ggcaagagtg gaactgacgc cgctgtcatt atactggcgt gtggtgtaca ctcctcaata
541 cctcatctcc cctgacactc tcaggaggct cagcggagag gctttccctt acaccgcctt
601 tgacaacaac tgctatgcct tttgttgttg ggtgttagac ctcaatgatt catggcttag
661 caggagaatg gtgcagagaa caacgggctt cttcagacct taccaagagt ggaacaggaa
721 acccctgcct accatggacg actccaaaat taagaaggtg gcaaatatat tcctatgttc
781 attgtccaca ttattcacca gacccataaa agacctcata ggaaaaatta aaccattaaa
841 catattgaat attctggcaa cgtgtgactg gacgtttgcc gggatagtgg agtctctgat
901 attacttgct gaactcttcg gagttttctg gacaccccca gatgtgtctg ctatgatcgc
961 tcccttactc ggggactacg agttgcaagg gccagaagac ctcgccgttg aactcgtgcc
1021 tgtggtaatg ggagggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat
1081 gttgtcttca gcagcatcaa cactcagggc ttgcaaagat cttggtgcct atggcttaga
1141 gatactcaaa ttggtcatga agtggttctt cccaaagaaa gaggaggcca atgagctagc
1201 catggtgagg gccatagagg atgctgtact agatcttgag gcaatagaaa ataaccacat
1261 gacaaccctg ttgaaagaca aagacagctt agcaacatac atgaaaacac tagacatgga
1321 ggaggagaaa gccagaaggt tgtccacaaa atctgcatcc cctgacatag ttgggacaat
1381 caacgcccta ctggctcgaa tagcagcggc caggtcatta gtccacaggg ccaaggaaga
1441 gttatctagc aggataagac cagtagttgt tatgatatct ggcaaaccag gaataggcaa
1501 aactcatctg gccagggagg tggcaagaaa ggtggcttcc actctcacag gggaccagag
1561 agtcggactc ataccaagaa acggtgtgga ccattgggat gcatacaaag gcgagagagt
1621 cgtgctgtgg gacgactatg gcatgagcaa tcccattcat gatgctcttc gcatacaaga
1681 attggctgat acgtgtcccc ttaccttaaa ttgtgacaga attgaaaaca aaggaaaagt
1741 ttttgacagt gaagtcataa taatcacgac aaaccttgcc aacccagccc cacttgatta
1801 tgtcaacttt gaggcctgtt ccaggagaat tgactttctg gtgtacgctg aggcaccaga
1861 agtagagaag gcaaaacggg acttccctgg tcagccagat atgtggaagg acgccttcaa
1921 gccggacttt tcacacatca agctgcaact cgcacctcag ggcggctttg acaagaatgg
1981 caacacccca catgggaaag gagtgatgaa gaccctcacc accggttctc tgatcgcccg
2041 tgcatcaggc ctactgcatg agagaatgga tgaattcgaa ctccaaggtc ctacaatcac
2101 caccttcaat ttcgaccgga acaggatcac agcattcaga caactggctg cagaaaacaa
2161 gtatggatta gtggatacca tgaaagttgg caatcaatta aaaggagtga aaaccatgga
2221 agaactcaaa caagcaatca ggaatgtgac catcaagagg tgccggatca tctacggtgg
2281 ctccacatat gaccttgaat ctgacggcaa gggcaaagtt ttggtggaga aggtcaagaa
2341 cacctctgta cagaccaaca acgagttggc cggggccttg caccatctca aacacgcccg
2401 aatcaggtac tatgtcaaat gtgtgcaaga agcagtctac tccatcatac aaattgccgg
2461 cgctgcgttt gtcaccacgc gcattgcacg ccgcatgaac atacaagaac tctggtcgaa
2521 gccacaatta gatcaaagtg agtcagagac taaggaagag gccctcaagt cagaggacga
2581 cgagttcgtc atatcttcta aggacatcaa ggaggaagga aagaagggca aaaataaaac
2641 tggccgtggc aagaaacaca ctgcattctc cagcaagggc ttgagcgatg aggagtatga
2701 cgagtataag aggataagag aagagagaaa tgggaagtac tctatagagg agtatcttca
2761 agacagagac aggtactatg aggagctcgc cattgccaag gccacggaag aagatttctg
2821 tgaagaggag gagatcaaaa tccgtcagag aattttccgt cccaccagga aacaaagaaa
2881 ggaagagagg gccacattag ggctagtaac gggttcagaa attagaaaaa gaaaccctga
2941 tgacttcaaa cccaaaggga agctgtgggc cgatgacaac agaagtgttg actataatga
3001 aaaactggac tttgaggccc ccccaagcat atggtctagg atcgtgagct ttggttctgg
3061 ctggggcttc tgggtatcac caagcctgtt tataacatca actcatgtga tccccccagg
3121 cataacagaa gcatttggag tctccatcaa acaaattcag atccacaaat caggtgaatt
3181 ttgccgattc agattcccaa aaccaattag accagatgtg acaggaatga tcttggaaga
3241 aggtgcgcct gagggcaccg tggcaactgt gctcatcaaa cgccccaccg gagagctcat
3301 gcctcttgca gccagaatgg gaacacacgc aaccatgaaa attcaaggcc gcatggttgg
3361 cggacagatg ggtatgttgc tcactggatc aaatgctaaa ggaatggatt tgggaacaac
3421 tcctggtgac tgtggctgcc cctacatcta taaaagaggc aacgactata tagtcattgg
3481 ggtgcacact gcagcagccc gtggtggaaa caccgtcatc tgcgccacac agggaagtga
3541 gggtgaggca actcttgagg gtggagatga caaaggaaca tactgtgggg cacccattct
3601 gggccctggg ggcgcaccaa aattgagcac caaaaccaaa ttttggaggt catcgaacac
3661 gccccttcca ccagggacat atgagcctgc ctacctcggc ggccgtgatc cgcgtgtcaa
3721 gggtgggccc tccttgcagc aggtaatgag agatcagttg aagccattca ctgaacccag
3781 gggcaaacct ccaagaccaa gtgtattgga agcagccaaa caaaccatca tcaatgtcct
3841 cgaacaaacc ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cctcgctcga
3901 caaaaccacc tccagcggga acccccatca cgtccgaaag aacgaattct ggaatggtga
3961 gaccttcact ggaaaattgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg
4021 gaaacatatg acaccagtgt atacagcagc actcaaggac gagctagtta agactgagaa
4081 aatctatgga aagatcaaga aaaggctgct ctggggctct gacttgtcca ccatgatccg
4141 gtgcgctagg tcatttggtg ggctcatgga cgagatgaag gcacactgca tatcactccc
4201 agtccgagtt ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag
4261 atacaagtac cactatgatg cagactactc tcgttgggat tcaacacaac agagggcagt
4321 actggcagca gccttggaaa tcatggtcag attctctgca gagccacaac tggcacaaat
4381 agtcgctgag gatctgctgg cccctagtgt agtagatgta ggagacttta aaattacaat
4441 aaatgaaggg ctcccctctg gtgttccatg cacttctcaa tggaactcca tcgcacactg
4501 gttactaact ctctgtgcct tgtctgaagt caccaaactg tcccctgaca ttatacaggc
4561 aaattctatg ttctcatttt acggtgatga cgagattgtc agcaccgaca taaaactaga
4621 ccctgaacag ttaaccgcca agttgaagga gtacggcctg aaaccaaccc gcccagacaa
4681 aaccgaggga cccctgatca tcagtgaaga tttggacgga ctcactttcc tccgaaggac
4741 ggtgactcgt gacccagctg gctggtttgg taaactggac cagagctcca ttttgaggca
4801 gatgtactgg actagagggc caaatcatga agaccccaat gagacaatga taccccattc
4861 tcagagaccc atacagctca tggcactgct tggtgaagcc tctcttcacg gaccctcttt
4921 ctatagtaaa atcagtaaat tggtcataac tgaactcaaa gaaggtggga tggactttta
4981 cgtgccaaga caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgagt gacgccgctc
5101 catctaatga tggtgcagcc ggtctcgtac cagaggtcaa taacgagaca atggcacttg
5161 aaccagttgc gggagcttca atcgccgccc ccttaactgg tcaaaacaat gtaatagacc
5221 cctggattag attaaatttt gtacaagccc caaatggtga gttcacagtc tccccccgaa
5281 actcacctgg tgaaattttg ctaaatttag agttaggacc tgaattaaat ccatatttgg
5341 ctcatttggc aagaatgtat aatggttatg caggtggggt cgaggtgcag gtactgcttg
5401 ctggaaatgc gtttacagca ggcaaattag tatttgcagc agtccctcct catttcccag
5461 tagacaattt gagtcccggc caaattacca tgttccccca tgtgattatt gatgttagaa
5521 cccttgaacc tgttttgtta ccactgcctg atgtaaggaa taatttcttt cattataatc
5581 aacagagtga acctcgtatg agacttattg ctatgcttta tacccctctt agatctaatg
5641 gttcaggtga tgatgttttt actgtgtctt gcagggtctt aaccagacca tcccctgatt
5701 ttgatttcaa ttatttggtc cccccaacag ttgaatctaa aactaaacct ttctcagtac
5761 cagtgctgac tctcaatgaa ctgaccaatt cccgtttccc tgtcccaatt gatgccttgt
5821 ataccagccc caatgataca attgtggtcc aacctcaaaa tgggagagca accatcgacg
5881 gtgagttgct tggcacgact cagctccttc ccaatggtat ctgctcattc agaggaagaa
5941 ttacagcaca tctgcaagag gacaatcact tgtggcacgt ccaagtcacc aacttgaatg
6001 gtaccccttt tgacccaaca gatgatgtgc ccgctccgtt gggcatgcca gacttttctg
6061 ggcagatatt tggggtggtt agccaaaggg atttaggtag caacaacccc gcaaataggt
6121 cccatgatgc tgtagttcca acctatagtg ccaaattcac ccctaaactc ggctcagtcc
6181 aaattggaac atgggatacc aatgatctac aactccagcc tgtcaaattc acgcctgttg
6241 gtctcaatga agttggagat ggcaaacatt ttgaccaatg ggtgttgcca aattactctg
6301 gtgccctggg gctcaacatg cacctggccc ctgctgtgtc cccactcttc cctggagaga
6361 gattgctttt ctttagatca tatataccct taaaaggtgg ctttggaaac ccatacattg
6421 attgccttgt gccacaagaa tggatacaac atttctatca agaatcagcc ccagcacaat
6481 cctcggtggc tctactgagg tatgtgaacc cagacacagg gcgcaccctg tttgaggcca
6541 aattgcatag ggaaggattc attactgttg ctagcacgga aaacagacct gtgactgtcc
6601 ccccaaatgg ttattttaga tttgattctt gggtaaacca gttttactca ctcgccccca
6661 tgggaactgg caatgggcgc agaaggatgc agtaatggct ggagctttta tagcaggact
6721 tgctggtgac attgtcacca atagtgttgg ctcacttgtg aacgctggag ctaatgccat
6781 aaaccaaaaa gttgattttg agaacaacaa acagttgcaa caggcttctt ttaatcatga
6841 taaagagatg ctgcaagccc aaatccaagc caccaagcaa ctgcaggctg acatgatctc
6901 aatcagacaa ggggttttga ccgcgggcgg cttctcccct actgatgctg caagaggtgc
6961 agtcaacgca ccaatgaccc aggtgttgga ctggaatgga actagatact gggcccctgg
7021 ggcatcaagg accaccagct tttctggtgg gttcaccaac actacccgtg ccagaacagt
7081 tgaatcaccc aagagttccc cccctgctta tagtgcttta gcttctgctt ctagacccag
7141 ttctactgtc tcatcttcct ctactcggtc gacagtagtc actaattctt ctgctgcctc
7201 ttctactagg tcttctgtaa ctagaaattc atcccgtaat attcctcaat ctgtttcttc
7261 tgtctcttct cgcactagtg attgggtaca aaaccaaaat agaatgctgg agccatatct
7321 gaagggatct ctgcaaacag cttttgtgtc accgccctcc agtaaggctt ctagtaatgg
7381 cactgtctca accgtgccaa aagaaatttt ggactcctgg acatctgcgt ttaacacccg
7441 cagacagccg ctcttcgcac atctccgtcg gaggggggag tcacaagctt agtgaaaaga
7501 ctttgatttt cctttttctt t
//