Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC769701 | GII.4 San Francisco | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 1..5087
ORF2: 5068..6693
ORF3: 6693..7499
LOCUS LC769701 7567 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2021/GII.4[P31]/NICED-BCH-12621, nearly
complete genome.
ACCESSION LC769701
VERSION LC769701.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7567)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7567
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus
GII/Hu/IN/2021/GII.4[P31]/NICED-BCH-12621"
/isolate="Hu/IN/2021/GII.4[P31]/NICED-BCH-12621"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2021-01-22"
/note="genotype: GII.4[P31]"
gene <1..5087
/gene="POL"
CDS <1..5087
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74147.1"
/translation="NDASAAAAANSNNDTEKSSSDGVFSNMAVTFKRALGARPKQPPP
KEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKGGVSGLPELTTVSQPEENNTA
FSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVE
LAPLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLN
ILNILATCDWTFPGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVEL
VPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA
SELAMVRSIEDAVLDLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASP
DIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELAKKIA
ASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLN
CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPGVEKAKHDF
PGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH
ERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMPDLKQ
ALKNVSIKKCQIVYNGGTYTLEADGKGSVKIDKVQSATVQTNNELAGALHHLRCARIR
YYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETTSKDGCPKPKD
DEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEI
RKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFIT
STHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATL
LIKRPTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY
IYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAP
KLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRIKGGPSLQQVMRDQLKPFTEPRGKPP
RPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESF
TGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIR
CARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQR
DVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLK
PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP
SETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5068..6693
/gene="VP1"
CDS 5068..6693
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74148.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGSVTQTATGTHNYTMNLASQNWNSYDPTEDIPAPLGTPDFVGKIQGV
LTQTTRGDGSTRGHKATLYTGSNDFTPKLGRVQFETDTNHDFETNQNTKFTPVGVIQN
GDTAHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTLPGCSGYPNMDL
DCLLPQEWVQYFYQEAAPAQSEVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDL
VIPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6693..7499
/gene="VP2"
CDS 6693..7499
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74149.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGVLPGRANLRNAAPARGSSSTLS
NSSIATSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTHKQPLFAHIRRRGESRV"
ORIGIN
1 ctaacgacgc ttccgctgcc gctgctgcta acagcaacaa cgacaccgaa aaatcttcaa
61 gtgacggtgt gttttctaac atggctgtca cttttaagcg ggccctcggg gcgcggccta
121 aacagccgcc cccgaaggaa ataccaccta gacccccaag accacccaca ccagagttgg
181 tcaaaaagat cccacctccc ccacccaacg gggaggatga actagtggtt tcttacagcg
241 ccaaaggcgg cgtttccgga ttgcctgagc tcaccaccgt cagccaacca gaagaaaaca
301 acacggcgtt cagtgttccc ccgctcaatc aaagggagaa cagggatgct aaggaaccac
361 taactggaac aatcattgag atgtgggatg gagaaatcta tcattacggc ctgtacgtag
421 aacgaggcct tatacttggt gtgcacaagc caccggcagc catcagcctt gccaaagttg
481 agctagcacc actctctttg ttctggagac ctgtgtatac cccccagtac ctcatctctc
541 cagacactct taagagacta catggagagt cattccccta caccgcattt gacaacaact
601 gctacgcctt ttgctgttgg gtgttagacc taaacgactc atggctaagt aggagaatga
661 ttcagagaac aacaggtttc ttcaggccgt accaagaatg gaacagaaaa cccctcccca
721 ctatggatga ctccaaattg aagaaggtag ccaacatatt cttgtgcacc ttgtcttcac
781 tattcaccag acccattaag gacataatag gaaaattgaa acctctcaac atcctcaata
841 ttctggccac atgtgattgg accttcccag gtatagtgga atccctgata ctcttggcag
901 aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttactag
961 gcgattatga actgcaaggg cctgaggacc ttgcagtaga actggtccca gtggtaatgg
1021 gggggatagg tttggtgcta ggattcacca aagagaaaat tggaaagatg ctgtcgtccg
1081 ctgcatccac cttgagagct tgcaaagacc ttggtgcata cggactggaa attttgaaac
1141 tagtcatgaa gtggttcttt ccaaagaaag aggaagcaag tgaactggct atggtgagat
1201 ccatcgagga tgcagtgcta gacctcgagg caattgaaaa caaccatttg accaccctgc
1261 tcaaagacaa agacagcttg gcaacctaca tgaggaccct tgaccttgag gaagagaaag
1321 ccagaaaact ctcaaccaaa tccgcttcac ctgatattgt gggcacaatc aacgctcttc
1381 tggcacgaat cgccgctgca cgctccctag tgcatcgggc gaaagaggag ctctccagca
1441 ggccgagacc tgttgttgtg atgatatcgg gaaaaccagg gatagggaaa actcaccttg
1501 ccagggagtt ggccaaaaag atcgcagcct ccctcacagg ggaccagcgt gtgggtttga
1561 tcccacgcaa cggcgtcgac cactgggatg catacaaggg tgaaagagtt gtcctatggg
1621 acgactatgg gatgagtaac cccatacacg atgccctcag gttgcaggaa cttgctgaca
1681 cttgccccct cacactaaat tgtgatagga ttgagaacaa aggaaaagtc tttgatagcg
1741 atgccataat tatcaccacc aatctggcca acccagcacc actggattac gtcaattttg
1801 aagcgtgttc gaggcgcatt gacttcctcg tgtacgcgga agctcctggg gtggagaagg
1861 caaaacacga cttcccaggc cagcctgaca tgtggaagaa cgctttcagc tctgacttct
1921 cacacataaa actggcattg gctccacagg gcggttttga caagaacggt aacaccccgc
1981 atggaaaagg tgtcatgaag accctcacca ctggctctct catcgcccga gcatcagggt
2041 tactccacga gaggctagat gaatatgaat tacaaggccc tgccctcacc actttcaact
2101 ttgaccgcaa caaggtgctt gcttttagac agctcgctgc tgaaaacaag tatggtctaa
2161 tggacacaat gagagttgga aaacagctca aggatgtcaa aactatgcca gaccttaaac
2221 aagcactcaa gaatgtctcg atcaagaagt gccagatagt gtacaatggt ggcacctaca
2281 cacttgaagc cgacggcaag ggtagtgtga aaattgacaa ggtgcaaagt gccaccgtgc
2341 aaaccaacaa tgaactagcc ggcgccctgc accacctaag gtgcgccaga atcaggtatt
2401 atgttaagtg tgtccaggag gcactgtact ccatcatcca aatcgctggg gctgcgtttg
2461 tcaccacgcg catcgccaag cgcatgaata tacaaaatct ctggtccaag ccacaggtgg
2521 aagacacaga agagacaacc agcaaagatg gttgcccaaa acccaaagat gatgaagagt
2581 tcgtcgtttc atctgacgac atcaaaactg agggcaagaa agggaagaac aagtccggcc
2641 gtggcaagaa gcacacagcc ttctcaagca aagggctcag tgatgaagag tacgatgagt
2701 acaagagaat tagagaagag aggaatggta agtactccat tgaggagtac ctccaggaca
2761 gagacaagta ctatgaggaa gtggccattg ccagggcaac tgaagaggac ttctgtgaag
2821 aagaagaggc caaaatccgg cagagaattt tcaggccaac aaggaaacaa cgtaaagaag
2881 agagggcctc tctaggcttg gtcacaggct cagaaatcag gaagagaaac ccagaagact
2941 tcaaacccaa gggaaagctg tgggctgatg atgacagaag tgttgactac aacgagaagc
3001 tcaactttga ggctccacca agcatctggt cgcggatagt caactttggt tcaggttggg
3061 gtttctgggt ctcccccagt ctgtttataa catcaaccca tgttataccc caaggtgcaa
3121 aagagttctt cggagtcccc atcaaacaaa tccagataca caaatcaggt gaattctgcc
3181 gattgagatt cccaaaacca atcagaactg atgtgacggg catgatcctg gaagaaggtg
3241 cgccagaagg aaccgtggcc acactgctca tcaagagacc aactggagag ctcatgcctt
3301 tggcagccag aatgggaacc catgcaacca tgaggattca ggggcgcacg gttggaggac
3361 aaatgggtat gctcttgaca ggatccaacg ccaagagtat ggacttgggc acaacgccag
3421 gcgactgtgg ctgtccctac atctacaaaa gagggaatga ctacgtggtt ataggagtcc
3481 atacagccgc tgcccgtgga gggaacactg tcatctgcgc cacccagggt agtgaaggag
3541 aagccacact tgaaggaggt gacaataaag gaacgtactg tggtgcacca attttgggcc
3601 cagggagtgc tccgaaactc agtactaaaa ccaagttttg gagatcatcc acaacgccac
3661 tcccaccagg cacctacgaa ccagcctacc tcggtggcaa ggaccccaga atcaaaggtg
3721 gcccttcatt gcaacaagtt atgagggacc aactaaaacc attcacagaa cccagaggca
3781 aaccgccaag accaaacgtg ttagaagctg ccaagaaaac catcattaat gtccttgagc
3841 agacaattga cccaccccaa aaatggtcgt tcgcgcaagc ttgcgcatcc cttgacaaaa
3901 ccacctccag cggccatccg caccacatgc ggaaaaacga ctgctggaat ggggaatcct
3961 ttacaggaaa attggcagat caggcctcca aggccaatct aatgtttgaa gagggaaaga
4021 acatgactcc agtttacaca ggtgcgctta aagatgaatt agtgaagact gacaagatct
4081 atggcaagat caagaagagg ctcctgtggg gctcggacct ggcgaccatg atacggtgcg
4141 cccgggcttt cggaggcctt atggatgaac tcaaggcaca ttgtgtcacc ctccctgtca
4201 gagttggtat gaacatgaat gaagatggcc ccataatctt tgagaagcac tccagatata
4261 aatatcatta tgatgctgat tactccaggt gggactcgac acaacaaagg gatgtgctag
4321 cagcagcact agaaatcatg gttaagttct ctccagaacc acacttggcc cagatagttg
4381 cagaagacct cctttcccct agtgtaatgg atgtgggtga cttccagata tcaataagtg
4441 aaggactccc ctccggggtg ccttgcacct cccagtggaa ttccatcgcc cactggctcc
4501 tcaccctttg tgcactctct gaagtcacgg acctgtcccc tgacatcatt caggccaact
4561 cccttttctc cttctatggt gatgatgaga ttgtgagcac agacataaag ttggacccag
4621 agaagctgac ggcaaaactc aaggagtacg ggctgaagcc aacccgcccc gacaaaactg
4681 aaggacccct tgtcatctct gaagatctgg atggcctgac attcctccgg agaactgtga
4741 cccgtgaccc agctggctgg tttggaaaat tggaacaaag ttcgattctc aggcaaatgt
4801 actggaccag gggtcccaac catgaagacc catctgaaac aatgatacca cactcccaaa
4861 gacccataca attgatgtcc ttgctaggcg aggctgcgct ccacggccca gcattttaca
4921 gcaaaattag caaattggtc attgcagagt tgaaggaagg tggcatggat ttttacgtgc
4981 ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg tgggagggcg
5041 atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc caacccatct
5101 gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc tctggagccc
5161 gttgttggtg ccgctattgc ggcgcctgta gcgggccaac aaaatgtgat tgacccctgg
5221 attagaaata attttgtgca agcccctggt ggagagttta cagtatcccc tagaaacgcc
5281 ccaggtgaaa tactatggag tgcaccctta ggcccagatc taaaccccta cctatcccat
5341 ttggccagaa tgtataatgg ttatgcaggt ggttttgaag tgcaggtaat tcttgcgggg
5401 aatgcgttca ccgccggaaa gatcatattt gcagcagtcc caccaaattt cccaactgaa
5461 ggcttgagcc caagccaggt cactatgttc ccccatataa tagtagatgt tagacaactg
5521 gagcctgtgt tgatcccctt acccgatgtt aggaataatt tctatcacta taaccaatca
5581 aatgacccca ccattaagtt gatagcaatg ttgtacacac cacttagggc taataatgct
5641 ggagatgatg tcttcacggt ttcttgccga gtcctcacta gaccatcccc tgattttgat
5701 tttatattct tagtgccacc cacagttgaa tcaagaacta aaccattctc tgtcccaatt
5761 ttaactgttg aggagatgac taattcaaga ttccccattc ctttggaaaa gttgttcaca
5821 ggtcccagca gtacctttgt tgttcaacca cagaatggta ggtgtacgac tgatggcgtg
5881 ctcctaggta ccacccaatt gtctcctgtc aacatctgca ccttcagagg gagcgtcacc
5941 caaacagcga caggcactca taactacaca atgaatttgg cttcccaaaa ttggaacagt
6001 tatgatccaa cagaagacat cccagcccct ctaggaactc cagatttcgt agggaagatt
6061 caaggtgtgc tcacccagac cacaagagga gatggctcaa cacgcggcca caaagccaca
6121 ttgtatactg ggagcaacga tttcactcca aaactgggta gggtccaatt tgaaactgac
6181 acaaaccacg attttgagac taaccaaaac acaaagttca ctccggtcgg cgtcatccag
6241 aacggagaca ctgcccaccg aaatgaacct caacaatggg tgctcccaag ttattcaggc
6301 agaaatactc ataatgtgca tctggccccc gctgtagctc ccacttttcc gggcgagcag
6361 ctcctcttct tcagatctac cttgcctggg tgcagcgggt atcccaacat ggatttggat
6421 tgtctactcc cccaggagtg ggtacagtac ttctatcaag aggcagcccc agcacaatct
6481 gaagtggctc tgttaaggtt tgtgaatcca gacacaggta gggttttgtt tgagtgtaag
6541 ctccacaaat cgggctatgt cacagtggcc cacactggcc aacatgattt ggttattccc
6601 cccaatggtt atttcagatt tgattcctgg gtcaaccaat tctacacgct tgcccccatg
6661 ggaaatggaa cggggcgtag acgtgcatta taatggctgg agctttcttt gctggattgg
6721 catctgatgt ccttggctct ggacttggtt ccctgatcaa cgctggggct ggggccatca
6781 atcaaaaggt tgaatttgaa aataacagaa aattgcaaca agcttcattc caatttagta
6841 gcaacctaca acaggcttcc tttcaacacg acaaagagat gctccaagca caaattgagg
6901 ccaccaaaaa gctgcaacag gaaatgatga aagttaagca ggcagtgctc ctagagggtg
6961 ggttttctga gacagatgca gcccgcgggg caatcaacgc ccctatgaca aaagctttgg
7021 actggagcgg tacaaggtat tgggcacccg atgctaggac tacaacatac aatgcaggcc
7081 gcttctctac cccccaacca tcgggggtac tgccaggaag agctaacctc aggaatgctg
7141 cccccgctcg aggctcctct agcacacttt ccaactcctc tattgctact tctgtgtact
7201 caaatcaaac tgcttcaacg agacttggtt ctacagctgg ttctggaacc agtgtctcga
7261 gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaatagg aatctgtcac
7321 ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc agatcctcta
7381 gccaaggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact ggtgctttta
7441 acacgcacaa gcagcctctc ttcgctcaca ttcgtaggcg aggggagtca cgggtgtaat
7501 gtgaaaagac aaaattgatt atctttcttt tctttagtgt cttttaaaaa aaaaaaaaaa
7561 aaaaaaa
//