Typing tool
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Typing tool
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Complete norovirus genomes
| LC769700 | GII.17 | |
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| GII.P38 |
ORF1: 5..5140
ORF2: 5121..6734
ORF3: 6734..7513
LOCUS LC769700 7577 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.17[Puntypeable]/NICED-BCH-11889,
complete genome.
ACCESSION LC769700
VERSION LC769700.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7577)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7577
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.17[Puntypeable]/
NICED-BCH-11889"
/isolate="Hu/IN/2019/GII.17[Puntypeable]/NICED-BCH-11889"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: North 24 Parganas"
/collection_date="2019-10-01"
/note="genotype: GII.17[Puntypeable]"
gene 5..5140
/gene="POL"
CDS 5..5140
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74144.1"
/translation="MKMASNDAATATAGKTSSNSEIHNQDVNPTSNLFANMTVGLKRA
LGARPKQSAPRAPSPSKERKLETTPKASPPEKERRPNIPKIPPPPPNGEDIVIKYTKH
DDLIEGVPTISTVDVSPVHNTAYSVPPLDQREKVDAKEPLTGSILEMWDGEIYHYGLY
VEKGQVLGVHKPPAAISFARIELTPLSLYWRVVYTPPYLVAPETLKKLHGESFPYTAF
DNNCYSFCCWALDLNDSWLNRKFVSRTTGFYRPYQDWNRKPLPTMDEGKLKKVANVFL
CALSGLFTRPIKDLIGKLRPLNLLNIITNCDWTFPGVVEAVILLAELFGVFWTPPDIS
AFIASLLGDYEMQGPEDIAVEIVPVVLGGIGMVLGFTKERIGRLLSSAASSLRACREI
GNYGIEVVKLVMKWFFPTKNETNEMEMVRAIEDAVLDFEAIENNHLTTLLKDKNSLAT
FLRELDLEEEKARKLSTKSASPDIVGTINALLARIAAVRSLVHRAKEEMSSRIRPVVI
MISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGM
SNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEAC
SRRIDFLVYADSPGVDKVKRDFPGQPDMWKDAFRPDFSHIKLQLAPQGGFDKNGNTPH
GKGVMKTLTIHSLVARATGLLHERLDEFDLQGPELPVYNFDQNRVAAFRKLAAENKYG
LMETIKVGNRLKGVSSLEQLKDALKDISIRPCRIIYSSTAYDLESNGSGRVNIKKVVD
HKVQTNNEINSALNNLRGARVRYYVKCVQEMTYSILQIAGAAFVTSRMVQRLNVNSFW
AKPEKQTEAVEGPPVPPAEEWTIVPSNTTQEGKKGKNKSGRGKKHTAFSSKGLSDEEY
EEYKRIREERQGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRK
QRKEERATLGLVTGSEIRKRNPDDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIV
NFGSGWGFWVSSNLFITSTHVIPPNMTEAFGVPISQIQIHRSGEFCRMRFPKAIRPDV
SGMTLEEGAPEGTVVTVLIKRTTGELMPLAARMGTHATMKIQGRMIGGQMGMLLTGSN
AKNMDLGTVPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGD
NHGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQ
VMRDQLKPFTAPRGKPPRPAVLEAAKETICNVLEQTIDPPQKWSYAQACASLDKTTSS
GHPHHRKKNDNWNGESFTGVLADQASKANLMYEQGKNMQPVYTAALKDELVKTSKIYE
TIKKRLLWGSDLGTMVRCARSFGGLMDEMKANCVNLPIRVGMNMNEDGPVIFEKHSKY
RYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVAEDLLAPSVVDVGDFQIA
INEGLPSGVPCTSQWNSISHWLITLCAMSEVSGLSPDVVQATSCFSFYGDDEIVSTDI
KLDPMELTNKLKEYGLIPTRPDKTEGPLIIKESLEGLTFLRRVVCRDPAGWYGKLDQS
SIMRQLYWTKGTNHDDPSETMIPHSQRPIQLMSLLGEAALHGPTFYKKVSKLVITELK
EGGMDFYVPRHEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5121..6734
/gene="VP1"
CDS 5121..6734
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74145.1"
/translation="MKMASNDAAPSNDGAAGLVPEINTETLPLEPVAGAALAAAVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNRPSERMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTIAELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLLPTGICAFRGKITADVENSHRDRWHMQLTNLNGTPFDPTDDVPAPLGTPDFTGLLF
GVASQRNADNTTRAHEAVIATTSTQFVPKLGSVNFGSRSGDLQVGQPTKFTPVGISTD
DEHPFKQWDLPHYSGVLTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGISDGIIDCLM
PQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHTGDYPLVVPS
NGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6734..7513
/gene="VP2"
CDS 6734..7513
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74146.1"
/translation="MAGAFIAGLAGDMLTSTVGSLANAGANAITQKIDFENNKQLQTA
SFQHDKDMLRAQVDATKQLQAEMIAIKQGILTAGGFSPADAARGAVGAPLTKVLDWSG
TRYWAPNSTKTTSYSGQFTSTPVHTPNFNNKPRPPAKTQPSSSSSGSVYSLSTQSTSL
PRPSSSGSSVSSASTQSTKLSSVSSMSRIENWVNQQRSLSPYMSGALNISHVSPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctgc cactgcgacc gctggcaaaa ccagctcaaa
61 cagtgaaatt cacaatcaag atgtaaaccc tacatccaac ctcttcgcca acatgactgt
121 tggcctgaag agggccctgg gggcgcggcc aaaacagtcc gcccctaggg caccttctcc
181 tagcaaagag aggaagctcg aaaccacccc taaagcttcc cctcccgaga aggaaagaag
241 acccaacatc cccaaaatac cacccccacc acctaatggt gaggacatag tcatcaaata
301 caccaagcat gatgacttga ttgagggggt gcctaccatc tctaccgtag atgtatcccc
361 tgtacacaac accgcataca gcgtccctcc attggaccag agggagaaag ttgatgcgaa
421 ggagcccttg acgggttcaa tactcgaaat gtgggacggg gagatctacc actacgggct
481 ctatgtggag aagggccaag tccttggcgt gcataagcct ccagccgcta taagctttgc
541 acgcatagag ctcacccccc tctctctcta ctggagggtg gtctacaccc caccttacct
601 agtggctcca gaaaccctca agaagctcca tggtgaatca tttccgtaca cagcctttga
661 caacaactgt tactccttct gctgttgggc cttggacctg aatgattctt ggctcaatag
721 gaagtttgtg tcaagaacca cgggtttcta caggccctat caggattgga acagaaaacc
781 cttgccaacc atggatgaag gaaaacttaa gaaagtggct aacgttttcc tgtgtgctct
841 ctctgggctt ttcaccaggc ctatcaaaga tcttataggg aagttgagac cgttaaactt
901 actcaacatc atcaccaact gtgactggac tttccctgga gtcgtggaag cagtcatact
961 gctcgcggaa ctctttggag ttttctggac accaccagac atctctgcct tcatagcatc
1021 cctcttgggt gactatgaga tgcagggtcc tgaagacatt gcagttgaga tcgtgccagt
1081 tgtcctcggc ggcataggca tggtgcttgg gttcaccaaa gagaggatcg gccgattgct
1141 gagctccgcc gcgtcatcgc ttagagcttg cagagaaatt ggcaattatg gaatagaggt
1201 ggtgaaactg gtgatgaagt ggttcttccc cactaagaat gagacaaacg aaatggaaat
1261 ggtgagggca atagaggatg ctgtgcttga ctttgaggcc atagagaaca accacctgac
1321 cacactgttg aaggacaaaa acagcctagc caccttcctt agagaattgg atttggaaga
1381 ggaaaaggcg aggaagttgt caacaaagtc tgcatcccca gacattgttg gcactataaa
1441 tgctctactg gccagaatcg ctgcagttag atccctagtc cacagggcca aggaagaaat
1501 gtcatctagg attcgtcccg ttgtcatcat gatttctggc cggcctggaa tagggaagac
1561 acacctagcc cgtgacctgg ccaaaaagat ggcggcaact ctttcaggtg accagagagt
1621 gggactcgtg ccaaggaatg gcgtcgacca ctgggacgca tacaagggtg agaggattgt
1681 gctttgggat gattatggta tgagtaaccc tgtgactgat gcactgcgac ttcaagagct
1741 cgctgacaca tgccctctga ccctcaattg tgacaggata gaaaacaagg ggaaagtatt
1801 tgacagtgac accataataa taaccaccaa cctggctaac cctgccccct tggactatgt
1861 caattttgag gcttgctccc gccgcatcga cttccttgtc tacgcggact cccctggagt
1921 tgacaaagtg aagagagatt tccccggcca gccagacatg tggaaggatg ctttcagacc
1981 agatttctca cacataaaac tccaactggc accacagggg ggttttgaca agaacggaaa
2041 cactccccat ggcaagggcg ttatgaaaac attaactata cactcccttg ttgcccgtgc
2101 cacgggcctc ctccacgaga gattggatga atttgatctg caaggacccg agttgcccgt
2161 gtacaatttt gaccaaaaca gggtagctgc ctttaggaaa cttgcagctg aaaacaaata
2221 tggtcttatg gaaaccatta aggttggcaa caggctgaag ggcgtgagta gtttagaaca
2281 actcaaggac gccctgaaag acataagcat cagaccatgt aggataatct acagttctac
2341 agcatatgat cttgagtcaa atggatcggg aagagtcaac atcaagaagg ttgtggacca
2401 caaggtccaa actaataatg aaatcaattc cgcgctcaac aacttgcgtg gtgccagggt
2461 gaggtattat gtcaagtgtg ttcaggagat gacttactcc atccttcaaa ttgccggagc
2521 ggcttttgtc acctcaagga tggtgcaaag actaaacgtc aatagtttct gggccaagcc
2581 agagaagcaa acggaggccg ttgaagggcc cccagtcccc ccagctgaag aatggactat
2641 agtcccatca aacacaacac aggaaggtaa gaagggtaag aacaagagtg gcaggggtaa
2701 gaagcacacc gccttttcta gtaagggcct tagtgatgaa gagtatgaag aatacaagag
2761 gattagggag gaaagacaag gaaaatactc catagaagaa tacttacagg acagggacag
2821 atactatgaa gaattggcca tagccaaggc aacagaggaa gacttttgtg aggaagagga
2881 aatcaagatc agacaaagga tcttccgccc aaccagaaaa caacgaaaag aagagagggc
2941 aaccttgggc ctggtcacgg ggagtgagat cagaaagagg aatccggatg atttcaaacc
3001 aagagggaag ctgtgggccg atgacgaccg cagtgtgaac tacaatgaga agatagactt
3061 tgaagcccct cctagccttt ggtcccgtat agtaaacttt ggatcaggct ggggcttttg
3121 ggtttcctct aatctgttta tcacatcaac gcatgtcatc cccccaaaca tgactgaagc
3181 tttcggtgtg ccaataagcc aaatacaaat ccataggagt ggtgagttct gtaggatgag
3241 atttcctaaa gccataagac ctgatgtttc aggtatgacc cttgaagaag gggcccctga
3301 aggcacagtg gtgactgtcc taatcaaaag aacaactggt gaacttatgc cgctggcagc
3361 ccgaatgggc acccatgcca ccatgaaaat acagggtaga atgattggag gccagatggg
3421 catgttgctc acaggttcaa atgccaaaaa tatggacctt ggcaccgtcc ctggagactg
3481 tggctgcccc tacgtgtaca agagaggcaa tgattgggtc gtcataggtg tgcacactgc
3541 agctgctagg ggaggcaaca cggtgatatg cgccacccag ggacctgatg gagaggctac
3601 acttgaagga ggggacaatc atggaactta ctgtggagca ccaatacttg gaccagggag
3661 tgcaccaaaa ctcagcacca aaacaaaatt ctggagatca tccactgctc cgcttccacc
3721 tggcacttat gaacccgcct atcttggtgg aaaagaccca agggttaagg gaggcccatc
3781 actacagcaa gtcatgagag accaactcaa acctttcacc gctccccgag gaaagccacc
3841 ccgtccggca gttcttgaag cggctaaaga gaccatatgt aatgtgcttg agcagaccat
3901 tgacccacct cagaagtggt cttatgcaca ggcctgtgcc tcactggaca aaacaacatc
3961 gagcggccac ccccaccaca ggaaaaagaa tgacaattgg aatggagagt ctttcaccgg
4021 tgtgctcgct gatcaagctt ctaaagcgaa cctcatgtac gagcagggga agaatatgca
4081 acctgtatat acagctgccc tcaaagatga gttagtcaaa acaagcaaga tctatgaaac
4141 catcaagaaa agactactgt ggggctcaga cctaggcacg atggtccgat gtgccagatc
4201 ctttggtggc ctcatggatg aaatgaaagc aaattgtgtg aacttaccaa ttagagttgg
4261 catgaacatg aatgaggatg gacctgtcat ttttgaaaaa cattcaaagt ataggtacca
4321 ctatgatgct gattattcca gatgggactc aacccaacaa agacatatat tgggagctgc
4381 cctagagata atggtcagat tctctgctga acctgagttg gcgcaaattg tggctgaaga
4441 ccttctagcc cctagtgttg tggatgtcgg cgatttccaa atcgccataa atgagggctt
4501 accctctggg gtaccgtgca catcacaatg gaattcaatc tcccactggc tcataacatt
4561 atgtgccatg tcagaggtgt cggggctatc accagatgtg gtgcaagcaa cttcctgctt
4621 ctcattctat ggggatgatg agatagtcag cactgatatt aaattggacc ctatggaact
4681 aaccaacaaa ttgaaggaat atggactgat accaacaaga ccagataaaa cagaaggacc
4741 actcataata aaggagagtc tcgagggtct aacttttctg agaagagttg tgtgccggga
4801 tccagctggt tggtacggga aactcgacca atcttcaatc atgaggcagc tatactggac
4861 caaaggaacc aatcatgatg accccagcga gacaatgatc ccacactctc agagacccat
4921 acaactgatg tcattactag gggaagcagc attacatggg ccaacctttt acaagaaggt
4981 tagtaaattg gtcatcactg agctcaagga aggtggaatg gatttttatg tgccaagaca
5041 tgaacccatg ttcagatgga tgagattctc tgatctcagc acttgggagg gcgatcgcaa
5101 tctggctccc gagggtgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg
5161 gtgctgcggg cctcgtccca gagatcaaca ccgagaccct tcccctggaa ccagtggctg
5221 gtgcagctct cgctgcggct gtcactggtc aaaataatat aattgatccc tggattagaa
5281 caaattttgt acaagcaccc aatggagagt tcactgtttc acctaggaac tccccaggag
5341 agatcctcct aaatttagaa ttaggtcctg atttaaatcc ttatttggca cacttatcta
5401 gaatgtacaa tgggtatgct ggtggagtgg aggtccaggt tctcttagca gggaatgcgt
5461 tcaccgctgg aaagatcctc ttcgctgccg taccaccaaa tttcccagtt gaatttttaa
5521 gtcctgccca aatcaccatg ctcccgcatt tgatagttga tgttaggacc cttgagccaa
5581 ttatgatacc cctccccgac gtgagaaata ccttcttcca ctataataat aggccttccg
5641 agcgcatgcg tttggtggcc atgctgtaca cacctctgag atccaacggt tcaggtgatg
5701 atgtcttcac agtctcatgc agagtgctaa ctagacctac tccagatttt gaattcacct
5761 atttagttcc accctcagta gaatctaaaa caaaaccttt ctctcttccc atcttgacca
5821 ttgccgaatt gactaactca aggtttccag cacccattga ttcattgttc actgcccaaa
5881 ataataatct caatgtccaa tgtcagaatg gacggtgcac actagatggt gagttgcagg
5941 gaactaccca gttgctccca actggcatat gtgccttcag agggaagata acagcagatg
6001 tggaaaacag tcaccgagac aggtggcaca tgcagttgac aaacctcaat ggtaccccat
6061 ttgacccaac agatgatgtt ccggctccgc ttggcactcc tgacttcacg ggtctgctgt
6121 ttggagttgc aagtcaaaga aatgctgaca acactaccag ggcccatgag gcagtgatag
6181 caacaactag cacacaattt gtaccaaaat taggctctgt caactttggg agtagaagtg
6241 gtgatcttca agtgggtcaa ccaaccaaat tcacaccagt tggaatctca actgatgacg
6301 agcatccttt caaacaatgg gacctacctc actattctgg agtactgact cttaatatga
6361 atcttgcccc tcctgttgcc ccaaacttcc cgggtgagca gctgcttttc tttagatcaa
6421 atgtcccctg tgctggtggt atcagtgatg gcatcattga ctgcctaatg cctcaagagt
6481 ggatacaaca cttctaccag gagtccgctc catcccaatc agacgtggca ctgatcaggt
6541 acgtcaaccc tgacacgggc cgcactctct ttgaggcaaa gctccacaga actggctaca
6601 tcaccgttgc tcacactggt gactatcctc ttgttgttcc ttctaatggt tacttcagat
6661 ttgattcttg ggtaaatcag ttttactcac tcgcccccat gggaactggg aatgggcgca
6721 ggagaatgca gtaatggcag gagcttttat agcaggtctt gcaggtgaca tgctcacctc
6781 cactgtaggc tcattggcga atgccggagc aaatgccata acacagaaaa ttgactttga
6841 aaacaacaaa caacttcaaa cagcctcttt tcaacatgac aaagatatgc tccgcgcaca
6901 agtggatgca accaagcagc tgcaggcaga aatgattgcc attaagcagg ggatcttgac
6961 cgctggcggc ttctcccctg ctgatgcagc aagaggggct gtaggagcac ccttgaccaa
7021 ggtgcttgac tggtctggca cacgttattg ggcaccaaat tccaccaaaa caacaagcta
7081 ctccgggcag ttcacatcaa cgcctgtgca cacaccaaat tttaacaaca aacccagacc
7141 tcctgctaaa acccaacctt cttcttcctc ttctggtagt gtctatagcc tttcaactca
7201 atcaacttcc ctccctagac cctcttcttc gggttcatct gtctcttctg cttcaacaca
7261 atcaacaaaa ttgagttcag tttcttctat gagtagaata gaaaattggg ttaatcaaca
7321 aagaagcctc agcccttata tgagcggggc cctcaacatt tctcatgtgt cacccccatc
7381 aagcagagct tcaagttcgg gaacagtctc aactgtgccc aaagaagttt tggactcctg
7441 gacatctgca ttcaacacac acagacaacc gctcttcgca cacctcagag tgagggggga
7501 gtcacgtgtt tagtgaaaag aattaattaa ttttaattag gctaaatttt aattggatct
7561 tttaaaaaaa aaaaaaa
//