Typing tool
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Typing tool
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Complete norovirus genomes
| LC769699 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5067
ORF2: 5048..6670
ORF3: 6670..7476
LOCUS LC769699 7522 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11726, nearly
complete genome.
ACCESSION LC769699
VERSION LC769699.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7522)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7522
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.4
Sydney[P16]/NICED-BCH-11726"
/isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11726"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2019-09-06"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5067
/gene="POL"
CDS <1..5067
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74141.1"
/translation="VACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRDEPQK
PPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVP
PLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELAPL
SLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQR
TTGFFRPYQEWNRKPLPTMDDSKIKKVANILLCSLSTLFTRPIKDLIGKIKPLNILNI
LATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV
MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELA
MVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVG
TINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTLT
GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRI
ENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQP
DMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMD
EFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAIRS
VTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHARIRYYVK
CVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSEDDEFII
SSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR
DRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSEIRRRNPD
DFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIP
AGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPT
GELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGN
DYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKT
KFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKPPRPSVLE
AAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWNGETFTGKLAD
QASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFG
GLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAA
LEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDK
TEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIP
HSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPNFVNEDGVE"
gene 5048..6670
/gene="VP1"
CDS 5048..6670
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74142.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6670..7476
/gene="VP2"
CDS 6670..7476
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74143.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGTLPGRANLRDAVPARGPSIKPS
NSSTATSVYSNQTISTRLGSAAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNSRRQPLFAHIRKRGESRV"
ORIGIN
1 gttgcttgca acaacaacaa cgacaaggaa aaatcttcag gtgaaggctt attcacaaat
61 atgtcttcca ccttaaagaa agccctcggg gctaggccca aacagcctgc cccgagagac
121 gaaccacaaa agcccccaag accaccaact cccgagttgg tcaagaggat accccctcct
181 ccacctaatg gcgaagaaga agaagaacca gtcattaggt atgaggttaa gagtgggatc
241 tctggcctgc ccgagctcac aacagtcccc caaccggacg tggccaacac agcatttagt
301 gttccaccac tgagcttaag agaaaacagg gaggccaagg aaccgctaac aggggcaata
361 ctagagatgt gggacggaga gatataccac tatggcctgt acgtggagaa aggcttagtg
421 ttgggtgtgc acaaaccacc tgcagccata agcatggcaa gagtggagct ggcgccgctg
481 tcattgtact ggcgtgtggt gtacactccc caatacctca tctcccctga aactctcagg
541 aggctcaatg gagaggcgtt tccttacacc gcttttgaca acaactgcta tgccttttgc
601 tgctgggtgt tagacctcaa tgactcatgg cttagcagga ggatggtgca aagaacaacg
661 ggcttcttca gaccttacca agagtggaac agaaaaccct tacccaccat ggatgactcc
721 aaaataaaga aggtagcaaa tatactccta tgttcattgt ccacattatt caccagaccc
781 ataaaagacc tcataggaaa aattaaacca ttaaacatat tgaacatcct ggcaacgtgt
841 gactggacgt ttgccggaat agtggagtct ctgatattgc ttgccgaact cttcggagtt
901 ttctggacac ccccagatgt gtctgctatg atcgctccct tactcgggga ctacgagttg
961 caagggccag aagacctcgc cgttgaactc gtacctgtgg taatgggagg gattggtttg
1021 gtgttgggat tcaccaaaga gaaaattggc aaaatgttgt cctcagcagc atcaacactc
1081 agggcttgta aagatcttgg tgcctatggc ttagagatac tcaaattggt catgaagtgg
1141 tttttcccaa agaaagagga ggccaatgag ctagccatgg tgagggccat agaggatgct
1201 gtactggatc ttgaggcaat agaaaataac cacatgacaa ccctgttgaa agacaaagac
1261 agcttagcaa catacatgaa aacactggac atggaggagg agaaagccag aaggttgtcc
1321 acaaaatctg catcccccga catagttggg acaatcaacg ccctgctggc tcgaatagca
1381 gcagccaggt cattagtcca cagggccaag gaagaactgt ctagcaggat aaggccagta
1441 gttgttatga tatctggcaa accaggaata ggcaaaactc atctggccag ggaggtggca
1501 agaaaggtgg catccactct cacaggggat caaagagtcg gactcatacc aagaaacggt
1561 gtggaccatt gggatgcata caaaggtgag agagtcgtgc tgtgggacga ctatggcatg
1621 agtaacccca ttcatgatgc tctccgcata caagaattgg ctgatacgtg tccccttacc
1681 ttaaattgtg acagaattga aaataaggga aaagtttttg acagtgaagt tataataatt
1741 acaacaaacc ttgccaaccc agccccactt gattatgtca actttgaggc ctgttccagg
1801 agaattgatt tcctggtgta cgctgaggca ccagaagtag aaaaggctaa aagggatttt
1861 cctggtcagc cagatatgtg gaaggacgcc ttcaagccgg acttttcaca catcaagcta
1921 cagcttgcac ctcagggcgg ctttgataag aatggcaaca ccccacatgg gaaaggagtg
1981 atgaagactc tcactaccgg ttctctgatt gcccgtgcat caggtctact gcatgagagg
2041 atggatgaat ttgaactcca aggtcccaca atcaccactt tcaatttcga ccggaacaga
2101 atcacagcat tcagacaatt ggctgcagaa aacaagtatg gactggtgga caccatgaaa
2161 gttggcaatc aactaaaagg agtgaaaacc atggaagaac tcaaacaagc aatcaggagt
2221 gtgaccatca agaggtgtcg gatcatctac ggtggctcca cgtatgacct tgaatctgat
2281 ggcaagggca aagttttggt ggaaaaggtc aagaacacct ctatacagac caacaacgag
2341 ttggccgggg ccctgcacca ccttaaacat gcccgaatca ggtactatgt caaatgtgtg
2401 caagaagcag tctattccat catacaaatt gctggcgctg cgtttgtcac cacgcgcatt
2461 gcacgccgca tgaacataca agaactctgg tcgaagccac aattagatca aaatgaatca
2521 gagactaagg aagaggcccc caagtcagaa gatgacgagt tcatcatatc ttctaaggat
2581 atcaaggagg aaggaaagaa gggcaaaaac aaaactggcc gcggcaagaa acacactgca
2641 ttctctagca agggcttgag cgatgaggag tatgacgagt acaagaggat aagagaagag
2701 agaaatggga agtactctat agaggagtat cttcaagaca gagacaggta ctatgaggag
2761 ctcgccattg ccaaggccac ggaagaagat ttctgtgaag aggaggaggt caaaatccgt
2821 cagagaattt tccgtcccac caggaaacaa agaaaggaag agagggccac actagggctg
2881 gtaacaggtt cagaaatcag aagaagaaac cctgatgatt tcaaacccaa agggaagctg
2941 tgggccgatg acaacagaag tgttgactac aatgagaaac tggactttga ggccccccca
3001 agcatatggt ctaggattgt gagctttggt tctggctggg gcttctgggt atcaccaagc
3061 ctgttcataa catcaactca tgtgatccct gcaggcataa cagaagcatt tggagtcccc
3121 atcaaacaaa ttcagatcca caaatcaggt gaattttgcc gattcagatt cccaaaacca
3181 attagaccag atgtgacagg aatgatcttg gaagaaggtg cgcctgaagg caccgtggca
3241 actgtgctca tcaaacgccc caccggagag ctcatgcctc ttgcagccag gatgggaaca
3301 cacgcaacca tgaagattca aggccgcatg gttggtggac agatgggtat gttgctcact
3361 ggatcaaatg ctaaaggaat ggatttggga acaactcctg gtgactgtgg ctgcccttac
3421 atctataaaa ggggcaatga ctatatagtc attggggtgc acactgcagc agcccgtggt
3481 ggaaacaccg tcatctgtgc cacacaggga agtgagggtg aggcaactct tgagggtgga
3541 gatgacaaag gaacatactg tggggcaccc attctaggcc ctgggggtgc accaaaattg
3601 agcactaaaa ccaaattttg gaggtcatcg aacacgcccc ttccaccagg gacatatgag
3661 cctgcctacc tcggtggccg tgacccgcgt gttaggggtg ggccctcctt acagcaggta
3721 atgagagacc agttgaagcc attcactgaa cccaggggca aacctccaag accaagtgtt
3781 ttggaagcag ccaaacaaac cattatcaat gtccttgaac aaaccctgga tcctccacaa
3841 aaatggacat acgcacaggc gtgtgcctca cttgacaaaa ccacctccag cgggtatccc
3901 catcacgtcc gaaagaatga attctggaat ggtgagacct tcactggtaa attggcagac
3961 caagcatcaa aagcaaacct aatgtttgag gaagggaaac acatgacacc agtgtacaca
4021 gcagcactca aggacgagct agtcaagact gagaaaatct atggaaagat caagaagaga
4081 ctgctctggg gctctgactt gtccaccatg atccggtgcg ctaggtcatt tggtgggctc
4141 atggacgaga tgaaggcaca ctgcatatca ctcccagtac gagttggcat gaatatgaat
4201 gaagatggcc caataatatt tgagaaacat tccagataca aataccacta tgatgcagac
4261 tactctcgtt gggattcaac acaacagagg gcagtattag cagcagcctt ggagatcatg
4321 gtcagattct ctgcagaacc acaattggca caaatagtcg ctgaggatct actggcccct
4381 agtgtagtag atgtaggaga ctttaaaatc acaataaatg aagggctccc atctggcgtg
4441 ccatgcactt ctcaatggaa ttccatcgca cactggctgc taactctctg tgccttgtct
4501 gaagtcacca aactgtcccc tgacattata caagcaaatt ccatgttctc attttacggt
4561 gatgacgaga ttgtcagcac cgacataaaa ttggaccctg aacagttgac cgccaagttg
4621 aaggagtacg gcctgaaacc aacccgccca gacaagaccg agggacccct gatcatcagt
4681 gaagatttga atggactcac tttcctccga aggacggtga ctcgtgaccc agctggctgg
4741 tttggaaaac tggaccaaag ttcaattttg aggcagatgt actggactag aggaccaaat
4801 catgaagacc ccaatgagac aatgataccc cattctcaaa gacccataca gctcatggca
4861 ctgcttggtg aagcctctct tcacggaccc tctttctaca gtagaatcag taaattggtt
4921 ataactgaac ttaaagaagg tgggatggac ttttacgtgc caaggcagga acccatgttc
4981 aggtggatga ggttttctga cttgagcacg tgggagggcg atcgcaatct ggctcccaat
5041 tttgtgaatg aagatggcgt cgagtgacgc caacccatct gatgggtccg cagccaacct
5101 cgtaccagag gtcaacaatg aggttatggc tttggagccc gttgttggtg ccgctattgc
5161 ggcacctgta gcgggccaac aaaatgtaat tgacccctgg attagaaata attttgtaca
5221 agcccctggt ggggagttta cagtatcccc tagaaatgct ccaggagaaa tactatggag
5281 cgcgccccta ggccctgacc taaatcccta cctatcccat ttggccagaa tgtacaatgg
5341 ttatgcaggt ggttttgaag tacaggtaat tctcgcgggg aacgcgttca ccgccgggaa
5401 gatcatattt gcagcagtcc caccaaattt tccaactgaa ggcttaagcc ctagccaggt
5461 cactatgttc ccccatataa tagtagatgt tagacaattg gagcctgtgc tgatcccctt
5521 acccgatgtt aggaataatt tctatcatta caatcagtca aatgactcca caattaaact
5581 gatagcaatg ttgtacacac cacttagggc taacaatgct ggggatgatg ttttcacagt
5641 ttcgtgccga gttctcacga ggccatcccc cgattttgat ttcatattct tagtaccacc
5701 cacagttgag tcaagaacta aaccattctc tgtcccagtt ttaactgttg aggagatgac
5761 caattcaaga ttccccatcc ctttggaaaa gttgttcaca ggccccagca gtgcatttgt
5821 tgttcaacca caaaacggta gatgcacaac tgatggcgtg ctcctaggca ccacccaact
5881 ttctcctgtc aacatttgca ccttcagagg ggatgtcacc cacatcacag gtagtcacaa
5941 ctacactatg aatttggctt ctcaaaattg gaacaactat gatccaacag aagaaatccc
6001 agccccccta ggaactccag attttgtggg gaagattcaa ggcatgctca cccaaaccac
6061 aaggacagat ggttcaacac gcggccacaa agctacagtg tacactggga gcgccgactt
6121 tgctccaaaa ctgggtagag ttcaatttga aactgacaca aaccatgatt ttgaagctaa
6181 tcaaaacaca aagttcaccc cagtcggtgt cattcaagat ggtagcacca cccaccgaaa
6241 cgaaccccaa cagtgggtgc tcccaagcta ctcaggcaga aatactcaca atgtacattt
6301 ggcccccgct gtagccccca cctttccggg tgagcaactt ctcttcttca gatccaccat
6361 gcccggatgc agcgggtacc ccaacatgga tttggactgt ctgctccccc aggaatgggt
6421 gcagtacttc taccaagagg cggccccagc acaatctgat gtggctctgc taagatttgt
6481 gaatccagac acaggtaggg ttttgtttga gtgcaagctt cacaaatcag gctatgttac
6541 agtggctcac actggccaac atgatttggt tatccccccc aatggttatt ttaggtttga
6601 ttcctgggtc aaccagttct acacgcttgc ccccatggga aatggaacgg ggcgtagacg
6661 tgcagtataa tggctggagc tttctttgct ggattggcat ctgatgtcct tggctctgga
6721 cttggttccc ttatcaatgc tggggctggg gccatcaacc aaaaagttga gtttgaaaat
6781 aacagaaaat tgcaacaagc atccttccaa tttagcagca atttgcaaca ggcttccttt
6841 caacatgata aagagatgct ccaagcacaa attgaggcca ccaaaaagct acaacaggaa
6901 atgatgagag ttaagcaggc aatgctccta gagggtgggt tctctgagac agatgcagcc
6961 cgcggggcaa ttaacgcccc catgacaaag gctttggact ggagcgggac aaggtactgg
7021 gctccagatg ctagaattac aacatacaat gcaggccact tttccacccc tcaaccatcg
7081 gggacactgc caggaagagc taatcttagg gatgctgtcc ctgctcgggg accctccatc
7141 aaaccttcta actcttctac tgccacctct gtgtactcaa atcaaactat ttcaacgaga
7201 cttggttctg cagctggttc tggaaccagt gtctcgagcc tcccgtcaac tgcaaggact
7261 aggagctggg ttgaggatca aaataggaat ttgtcacctt tcatgagggg ggcccacaac
7321 atatcatttg tcaccccacc atctagcaga tcctctagcc aaggcacagt ctcaaccgtg
7381 cccaaagaaa ttttggactc ctggactggc gctttcaact cgcgcaggca gcctctcttc
7441 gctcacattc gtaagcgagg ggagtcacgg gtgtaatgtg aaaagacaaa actgattatc
7501 tttctttttc ttttctttag tg
//