Typing tool
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Typing tool
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Complete norovirus genomes
| LC769698 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5096
ORF2: 5077..6699
ORF3: 6699..7505
LOCUS LC769698 7547 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11725, nearly
complete genome.
ACCESSION LC769698
VERSION LC769698.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7547)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7547
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.4
Sydney[P16]/NICED-BCH-11725"
/isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11725"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: North 24 Parganas"
/collection_date="2019-09-06"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5096
/gene="POL"
CDS <1..5096
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74138.1"
/translation="MASNDATAAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDEPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANILLCSLSTLFTRPIKDLIGK
IKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRSVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLK
HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP
KSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTG
SEIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5077..6699
/gene="VP1"
CDS 5077..6699
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74139.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6699..7505
/gene="VP2"
CDS 6699..7505
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74140.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGTLPGRANLRDAVPARGPSIKPS
NSSTATSVYSNQTISTRLGSAAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNSRRQPLFAHIRKRGESRV"
ORIGIN
1 agatggcgtc taacgacgct accgctgccg ttgcttgcaa caacaacaac gacaaggaaa
61 aatcttcagg tgaaggctta ttcacaaata tgtcttccac cttaaagaaa gccctcgggg
121 ctaggcccaa acagcctgcc ccgagagacg aaccacaaaa gcccccaaga ccaccaactc
181 ccgagttggt caagaggata ccccctcctc cacctaatgg cgaagaagaa gaagaaccag
241 tcattaggta tgaggttaag agtgggatct ctggcctgcc cgagctcaca acagtccccc
301 aaccggacgt ggccaacaca gcatttagtg ttccaccact gagcttaaga gaaaacaggg
361 aggccaagga accgctaaca ggggcaatac tagagatgtg ggacggagag atataccact
421 atggcctgta cgtggagaaa ggcttagtgt tgggtgtgca caaaccacct gcagccataa
481 gcatggcaag agtggagctg gcgccgctgt cattgtactg gcgtgtggtg tacactcccc
541 aatacctcat ctcccctgaa actctcagga ggctcaatgg agaggcgttt ccttacaccg
601 cttttgacaa caactgctat gccttttgct gctgggtgtt agacctcaat gactcatggc
661 ttagcaggag gatggtgcaa agaacaacgg gcttcttcag accttaccaa gagtggaaca
721 gaaaaccctt acccaccatg gatgactcca aaataaagaa ggtagcaaat atactcctat
781 gttcattgtc cacattattc accagaccca taaaagacct cataggaaaa attaaaccat
841 taaacatatt gaacatcctg gcaacgtgtg actggacgtt tgccggaata gtggagtctc
901 tgatattgct tgccgaactc ttcggagttt tctggacacc cccagatgtg tctgctatga
961 tcgctccctt actcggggac tacgagttgc aagggccaga agacctcgcc gttgaactcg
1021 tacctgtggt aatgggaggg attggtttgg tgttgggatt caccaaagag aaaattggca
1081 aaatgttgtc ctcagcagca tcaacactca gggcttgtaa agatcttggt gcctatggct
1141 tagagatact caaattggtc atgaagtggt ttttcccaaa gaaagaggag gccaatgagc
1201 tagccatggt gagggccata gaggatgctg tactggatct tgaggcaata gaaaataacc
1261 acatgacaac cctgttgaaa gacaaagaca gcttagcaac atacatgaaa acactggaca
1321 tggaggagga gaaagccaga aggttgtcca caaaatctgc atcccccgac atagttggga
1381 caatcaacgc cctgctggct cgaatagcag cagccaggtc attagtccac agggccaagg
1441 aagaactgtc tagcaggata aggccagtag ttgttatgat atctggcaaa ccaggaatag
1501 gcaaaactca tctggccagg gaggtggcaa gaaaggtggc atccactctc acaggggatc
1561 aaagagtcgg actcatacca agaaacggtg tggaccattg ggatgcatac aaaggtgaga
1621 gagtcgtgct gtgggacgac tatggcatga gtaaccccat tcatgatgct ctccgcatac
1681 aagaattggc tgatacgtgt ccccttacct taaattgtga cagaattgaa aataagggaa
1741 aagtttttga cagtgaagtt ataataatta caacaaacct tgccaaccca gccccacttg
1801 attatgtcaa ctttgaggcc tgttccagga gaattgattt cctggtgtac gctgaggcac
1861 cagaagtaga aaaggctaaa agggattttc ctggtcagcc agatatgtgg aaggacgcct
1921 tcaagccgga cttttcacac atcaagctac agcttgcacc tcagggcggc tttgataaga
1981 atggcaacac cccacatggg aaaggagtga tgaagactct cactaccggt tctctgattg
2041 cccgtgcatc aggtctactg catgagagga tggatgaatt tgaactccaa ggtcccacaa
2101 tcaccacttt caatttcgac cggaacagaa tcacagcatt cagacaattg gctgcagaaa
2161 acaagtatgg actggtggac accatgaaag ttggcaatca actaaaagga gtgaaaacca
2221 tggaagaact caaacaagca atcaggagtg tgaccatcaa gaggtgtcgg atcatctacg
2281 gtggctccac gtatgacctt gaatctgatg gcaagggcaa agttttggtg gaaaaggtca
2341 agaacacctc tatacagacc aacaacgagt tggccggggc cctgcaccac cttaaacatg
2401 cccgaatcag gtactatgtc aaatgtgtgc aagaagcagt ctattccatc atacaaattg
2461 ctggcgctgc gtttgtcacc acgcgcattg cacgccgcat gaacatacaa gaactctggt
2521 cgaagccaca attagatcaa aatgaatcag agactaagga agaggccccc aagtcagaag
2581 atgacgagtt catcatatct tctaaggata tcaaggagga aggaaagaag ggcaaaaaca
2641 aaactggccg cggcaagaaa cacactgcat tctctagcaa gggcttgagc gatgaggagt
2701 atgacgagta caagaggata agagaagaga gaaatgggaa gtactctata gaggagtatc
2761 ttcaagacag agacaggtac tatgaggagc tcgccattgc caaggccacg gaagaagatt
2821 tctgtgaaga ggaggaggtc aaaatccgtc agagaatttt ccgtcccacc aggaaacaaa
2881 gaaaggaaga gagggccaca ctagggctgg taacaggttc agaaatcaga agaagaaacc
2941 ctgatgattt caaacccaaa gggaagctgt gggccgatga caacagaagt gttgactaca
3001 atgagaaact ggactttgag gcccccccaa gcatatggtc taggattgtg agctttggtt
3061 ctggctgggg cttctgggta tcaccaagcc tgttcataac atcaactcat gtgatccctg
3121 caggcataac agaagcattt ggagtcccca tcaaacaaat tcagatccac aaatcaggtg
3181 aattttgccg attcagattc ccaaaaccaa ttagaccaga tgtgacagga atgatcttgg
3241 aagaaggtgc gcctgaaggc accgtggcaa ctgtgctcat caaacgcccc accggagagc
3301 tcatgcctct tgcagccagg atgggaacac acgcaaccat gaagattcaa ggccgcatgg
3361 ttggtggaca gatgggtatg ttgctcactg gatcaaatgc taaaggaatg gatttgggaa
3421 caactcctgg tgactgtggc tgcccttaca tctataaaag gggcaatgac tatatagtca
3481 ttggggtgca cactgcagca gcccgtggtg gaaacaccgt catctgtgcc acacagggaa
3541 gtgagggtga ggcaactctt gagggtggag atgacaaagg aacatactgt ggggcaccca
3601 ttctaggccc tgggggtgca ccaaaattga gcactaaaac caaattttgg aggtcatcga
3661 acacgcccct tccaccaggg acatatgagc ctgcctacct cggtggccgt gacccgcgtg
3721 ttaggggtgg gccctcctta cagcaggtaa tgagagacca gttgaagcca ttcactgaac
3781 ccaggggcaa acctccaaga ccaagtgttt tggaagcagc caaacaaacc attatcaatg
3841 tccttgaaca aaccctggat cctccacaaa aatggacata cgcacaggcg tgtgcctcac
3901 ttgacaaaac cacctccagc gggtatcccc atcacgtccg aaagaatgaa ttctggaatg
3961 gtgagacctt cactggtaaa ttggcagacc aagcatcaaa agcaaaccta atgtttgagg
4021 aagggaaaca catgacacca gtgtacacag cagcactcaa ggacgagcta gtcaagactg
4081 agaaaatcta tggaaagatc aagaagagac tgctctgggg ctctgacttg tccaccatga
4141 tccggtgcgc taggtcattt ggtgggctca tggacgagat gaaggcacac tgcatatcac
4201 tcccagtacg agttggcatg aatatgaatg aagatggccc aataatattt gagaaacatt
4261 ccagatacaa ataccactat gatgcagact actctcgttg ggattcaaca caacagaggg
4321 cagtattagc agcagccttg gagatcatgg tcagattctc tgcagaacca caattggcac
4381 aaatagtcgc tgaggatcta ctggccccta gtgtagtaga tgtaggagac tttaaaatca
4441 caataaatga agggctccca tctggcgtgc catgcacttc tcaatggaat tccatcgcac
4501 actggctgct aactctctgt gccttgtctg aagtcaccaa actgtcccct gacattatac
4561 aagcaaattc catgttctca ttttacggtg atgacgagat tgtcagcacc gacataaaat
4621 tggaccctga acagttgacc gccaagttga aggagtacgg cctgaaacca acccgcccag
4681 acaagaccga gggacccctg atcatcagtg aagatttgaa tggactcact ttcctccgaa
4741 ggacggtgac tcgtgaccca gctggctggt ttggaaaact ggaccaaagt tcaattttga
4801 ggcagatgta ctggactaga ggaccaaatc atgaagaccc caatgagaca atgatacccc
4861 attctcaaag acccatacag ctcatggcac tgcttggtga agcctctctt cacggaccct
4921 ctttctacag tagaatcagt aaattggtta taactgaact taaagaaggt gggatggact
4981 tttacgtgcc aaggcaggaa cccatgttca ggtggatgag gttttctgac ttgagcacgt
5041 gggagggcga tcgcaatctg gctcccaatt ttgtgaatga agatggcgtc gagtgacgcc
5101 aacccatctg atgggtccgc agccaacctc gtaccagagg tcaacaatga ggttatggct
5161 ttggagcccg ttgttggtgc cgctattgcg gcacctgtag cgggccaaca aaatgtaatt
5221 gacccctgga ttagaaataa ttttgtacaa gcccctggtg gggagtttac agtatcccct
5281 agaaatgctc caggagaaat actatggagc gcgcccctag gccctgacct aaatccctac
5341 ctatcccatt tggccagaat gtacaatggt tatgcaggtg gttttgaagt acaggtaatt
5401 ctcgcgggga acgcgttcac cgccgggaag atcatatttg cagcagtccc accaaatttt
5461 ccaactgaag gcttaagccc tagccaggtc actatgttcc cccatataat agtagatgtt
5521 agacaattgg agcctgtgct gatcccctta cccgatgtta ggaataattt ctatcattac
5581 aatcagtcaa atgactccac aattaaactg atagcaatgt tgtacacacc acttagggct
5641 aacaatgctg gggatgatgt tttcacagtt tcgtgccgag ttctcacgag gccatccccc
5701 gattttgatt tcatattctt agtaccaccc acagttgagt caagaactaa accattctct
5761 gtcccagttt taactgttga ggagatgacc aattcaagat tccccatccc tttggaaaag
5821 ttgttcacag gccccagcag tgcatttgtt gttcaaccac aaaacggtag atgcacaact
5881 gatggcgtgc tcctaggcac cacccaactt tctcctgtca acatttgcac cttcagaggg
5941 gatgtcaccc acatcacagg tagtcacaac tacactatga atttggcttc tcaaaattgg
6001 aacaactatg atccaacaga agaaatccca gcccccctag gaactccaga ttttgtgggg
6061 aagattcaag gcatgctcac ccaaaccaca aggacagatg gttcaacacg cggccacaaa
6121 gctacagtgt acactgggag cgccgacttt gctccaaaac tgggtagagt tcaatttgaa
6181 actgacacaa accatgattt tgaagctaat caaaacacaa agttcacccc agtcggtgtc
6241 attcaagatg gtagcaccac ccaccgaaac gaaccccaac agtgggtgct cccaagctac
6301 tcaggcagaa atactcacaa tgtacatttg gcccccgctg tagcccccac ctttccgggt
6361 gagcaacttc tcttcttcag atccaccatg cccggatgca gcgggtaccc caacatggat
6421 ttggactgtc tgctccccca ggaatgggtg cagtacttct accaagaggc ggccccagca
6481 caatctgatg tggctctgct aagatttgtg aatccagaca caggtagggt tttgtttgag
6541 tgcaagcttc acaaatcagg ctatgttaca gtggctcaca ctggccaaca tgatttggtt
6601 atccccccca atggttattt taggtttgat tcctgggtca accagttcta cacgcttgcc
6661 cccatgggaa atggaacggg gcgtagacgt gcagtataat ggctggagct ttctttgctg
6721 gattggcatc tgatgtcctt ggctctggac ttggttccct tatcaatgct ggggctgggg
6781 ccatcaacca aaaagttgag tttgaaaata acagaaaatt gcaacaagca tccttccaat
6841 ttagcagcaa tttgcaacag gcttcctttc aacatgataa agagatgctc caagcacaaa
6901 ttgaggccac caaaaagcta caacaggaaa tgatgagagt taagcaggca atgctcctag
6961 agggtgggtt ctctgagaca gatgcagccc gcggggcaat taacgccccc atgacaaagg
7021 ctttggactg gagcgggaca aggtactggg ctccagatgc tagaattaca acatacaatg
7081 caggccactt ttccacccct caaccatcgg ggacactgcc aggaagagct aatcttaggg
7141 atgctgtccc tgctcgggga ccctccatca aaccttctaa ctcttctact gccacctctg
7201 tgtactcaaa tcaaactatt tcaacgagac ttggttctgc agctggttct ggaaccagtg
7261 tctcgagcct cccgtcaact gcaaggacta ggagctgggt tgaggatcaa aataggaatt
7321 tgtcaccttt catgaggggg gcccacaaca tatcatttgt caccccacca tctagcagat
7381 cctctagcca aggcacagtc tcaaccgtgc ccaaagaaat tttggactcc tggactggcg
7441 ctttcaactc gcgcaggcag cctctcttcg ctcacattcg taagcgaggg gagtcacggg
7501 tgtaatgtga aaagacaaaa ctgattatct ttctttttct tttcttt
//