Typing tool
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Typing tool
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Complete norovirus genomes
| LC769696 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5091
ORF2: 5072..6694
ORF3: 6694..7500
LOCUS LC769696 7559 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11668, nearly
complete genome.
ACCESSION LC769696
VERSION LC769696.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7559)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.4
Sydney[P16]/NICED-BCH-11668"
/isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11668"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2019-08-29"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5091
/gene="POL"
CDS <1..5091
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74132.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRGEPQKPPRPPTPELVKRIPPPPPNGVEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGRLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5072..6694
/gene="VP1"
CDS 5072..6694
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74133.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6694..7500
/gene="VP2"
CDS 6694..7500
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74134.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDAVPARGPSTKPS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gcgtctaacg acgctaccgt tgccgttgct tgcaacaaca acaacgacaa ggaaaaatct
61 tcaggtgaag gcttattcac aaatatgtct tccaccttaa agaaagccct cggggctagg
121 cccaaacagc ctgccccgag aggcgaacca caaaagcccc caagaccacc aactcccgag
181 ttggtcaaga ggataccccc tcctccacct aatggtgtag aagaagaaga accagtcatt
241 aggtatgagg ttaagagtgg gatctctggc ctgcccgagc tcacaacagt cccccaaccg
301 gacgtggcca acacagcatt tagtgttcca ccactgagct tgagagaaaa cagggaggcc
361 aaggaaccac taacaggggc aatactagag atgtgggacg gagagatata ccactatggc
421 ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc cataagcatg
481 gcaagagtgg agctgacgcc gctgtcattg tactggcgtg tggtgtacac tccccaatac
541 ctcatctccc ctgaaactct caagaggctc aacggagagg cgtttcctta caccgctttc
601 gacaacaact gctatgcctt ttgttgctgg gtgttagacc tcaatgactc atggcttagc
661 aggaggatgg tgcaaagaac aacgggcttc ttcagacctt accaagagtg gaacagaaaa
721 cccttgccta ccatggatga ctccaaaata aagaaggtgg caaatatatt cctatgttca
781 ttgtccacat tattcaccag acccataaaa gacctcatag gaaaaattaa accattaaac
841 atattgaaca tcctggcaac gtgtgactgg acgtttgccg gaatagtgga gtctctgata
901 ttgcttgctg aactcttcgg agttttctgg acacccccag atgtgtctgc tatgatcgct
961 cccttactcg gggactacga gttgcagggg ccagaagacc tcgccgttga actcgtacct
1021 gtggtaatgg gagggattgg cttggtgttg ggattcacca aagagaaaat tggcaaaatg
1081 ttgtcctcag cagcatcaac actcagggct tgtaaagatc ttggtgccta tggcttagag
1141 atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aggaggccaa tgagctagcc
1201 atggtgaggg ccatagagga tgccgtacta gatcttgagg caatagaaaa taaccacatg
1261 acgaccctgt tgaaagacaa agacagctta gcaacataca tgaaaacact ggacatggag
1321 gaggagaaag ccagaaggtt gtccacaaaa tctgcatccc ctgacatagt tgggacaatc
1381 aacgccctgc tggctcgaat agcagcggcc aggtcattag tccacagggc caaggaagag
1441 ctgtctagca ggataaggcc agtagttgtc atgatatctg gcaaaccagg aataggcaaa
1501 actcatctgg ccagggaggt ggcaaggaag gtggcatcca ctctcacagg ggatcagaga
1561 gtcggactca taccaagaaa cggtgtggac cattgggatg catacaaagg tgagagagtc
1621 gtgttgtggg acgactatgg tatgagtaac cccattcatg atgctctccg catacaagaa
1681 ttggctgata cgtgtcccct caccttaaat tgtgacagaa ttgaaaacaa gggaaaagtt
1741 tttgacagtg aagtcataat aattacaaca aaccttgcca atccagcccc acttgattat
1801 gtcaactttg aggcctgttc caggagaatt gatttcctgg tgtacgctga ggcaccagaa
1861 gtagaaaagg caaaacggga tttccctggt cagccagata tgtggaagga cgccttcaag
1921 ccggactttt cacacatcaa gctgcaactt gcacctcagg gcggctttga caagaatggc
1981 aacaccccac atgggaaagg agtgatgaag accctcacca ccggttctct gattgcccgt
2041 gcatcaggcc tactgcatga gaggatggat gaatttgaac tccaaggtcc cacaatcacc
2101 actttcaatt tcgacaggaa cagaatcaca gcattcagac aattggctgc agaaaacaag
2161 tatggactgg tggataccat gaaagttggc aatcaactaa aaggagtgaa aaccatggaa
2221 gaactcaaac aagcaatcag gaatgtgacc atcaagaggt gccggatcat ctacggtggc
2281 tccacgtatg atcttgaatc tgatggcaag ggcaaagttt tggtggaaaa ggtcaagaac
2341 acctctatac agaccaacaa cgagttggcc ggggccctgc accatcttaa acatgcccga
2401 atcaggtact atgtcaaatg tgtgcaagaa gcagtctatt ccatcataca aattgccggc
2461 gctgcgtttg tcaccacgcg cattgcacgc cgcatgaaca tacaagaact ctggtcgaag
2521 ccacaattag atcaaaatga atcagagacc aaggaagagg cccccaagtc agaagatgac
2581 gagttcatca tatcttctaa ggatatcaag gaggaaggaa agaagggcaa aaacaaaact
2641 ggtcgtggca agaaacacac tgcattctcc agcaagggct tgagcgatga ggagtatgac
2701 gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga gtatcttcaa
2761 gacagagaca ggtactatga ggagctcgcc attgccaagg ccacggaaga agacttctgt
2821 gaagaggagg agatcaaaat ccgtcagaga attttccgtc ccaccaggaa acaaagaaag
2881 gaagagagag ccacactagg gctggtaaca ggttcagaaa tcagaagaag aaaccctgat
2941 gatttcaaac ccaaagggaa gctgtgggcc gatgacaaca gaagtgttga ctataatgag
3001 aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt tggttctggc
3061 tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtgat ccctgcaggc
3121 ataacagaag catttggagt ccccatcaaa caaattcaga tccacaaatc aggtgaattt
3181 tgccgattca gattcccaaa accaattaga ccagatgtga caggaatgat cttggaagaa
3241 ggtgcgcctg aaggcaccgt ggcaactgtg ctcatcaaac gccccaccgg agagctcatg
3301 ccccttgcag ccagaatggg aacacacgca accatgaaga ttcaaggccg catggttggc
3361 ggacagatgg gtatgttgct cactggatca aatgccaaag gaatggattt gggaacaacc
3421 cctggtgact gtggctgccc ttacatctat aaaaggggca acgactatat agtcattggg
3481 gtgcacactg cagcagcccg tggtggaaac accgtcatct gtgccacaca gggaagtgag
3541 ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggggc acccattcta
3601 ggccctgggg gcgcaccaaa attgagcacc aaaaccaaat tttggaggtc atcgaacacg
3661 ccccttccac cagggacata tgagcctgcc tacctcggtg gccgtgaccc gcgtgtcagg
3721 ggtgggccct ccttacagca ggtgatgaga gaccagttga agccattcac tgaacccagg
3781 ggcaaacctc caagaccaag cgttttggaa gcagccaagc aaactattat caatgtcctt
3841 gaacaaaccc tggatcctcc acaaaaatgg acatacgcac aggcgtgtgc ctcacttgac
3901 aaaaccacct ccagcgggta tccccatcac gtccgaaaga atgaattctg gaatggtgag
3961 accttcactg gtaaattggc agaccaagcg tcaaaagcaa acctaatgtt tgaggaaggg
4021 aaacacatga caccagtgta cacagcagca ctcaaggacg agctagttaa gactgagaaa
4081 atctatggaa agatcaagaa gagactgctc tggggctctg acttgtccac catgatccgg
4141 tgcgctaggt catttggtgg gctcatggac gagatgaagg cacactgcat atcactccca
4201 gtacgagttg gcatgaatat gaatgaagat ggcccaataa tatttgagaa acattccaga
4261 tacaaatacc actatgatgc agactactcg cgttgggatt caacacaaca gagggcagta
4321 ttagcagcag ccttggaaat catggtcaga ttctctgcag aaccacaatt ggcacaaata
4381 gtcgctgagg atctactggc ccctagtgta gtagatgtag gagactttaa aatcacaata
4441 aatgaagggc tcccatctgg tgtgccatgc acttctcagt ggaactccat cgcacactgg
4501 ctgctaactc tctgtgcctt gtctgaagtc accaaactgt cccctgacat tatacaagca
4561 aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgacat aaaattggac
4621 cctgaacagt tgaccgccaa gttgaaggag tacggcctga aaccgacccg cccagacaag
4681 accgagggac ccctgatcat cagtgaagat ttgaatggac tcactttcct ccgaaggacg
4741 gtgactcgtg acccagctgg ctggtttgga agactggacc aaagttcaat cttgaggcag
4801 atgtactgga ctagaggacc aaatcatgaa gaccccaatg agacaatgat accccattct
4861 caaagaccca tacagctcat ggcactactt ggtgaagcct ctcttcacgg accctctttc
4921 tacagtagaa tcagtaagtt ggtcataact gaacttaaag aaggtgggat ggacttttac
4981 gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgacttgag cacgtgggag
5041 ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgagtg acgccaaccc
5101 atctgatggg tccgcagcca acctcgtacc agaggtcaac aatgaggtta tggctttgga
5161 gcccgttgtt ggtgccgcta ttgcggcacc tgtagcgggc caacaaaatg taattgaccc
5221 ctggattaga aataattttg tacaagcccc tggtggggaa tttacagtat cccctagaaa
5281 tgctccaggt gaaatactat ggagcgcgcc cctaggccct gacctaaatc cctacctatc
5341 ccatttggcc agaatgtaca atggttatgc aggtggtttt gaagtgcagg taattctcgc
5401 ggggaacgcg ttcaccgccg ggaagattat atttgcagca gtcccaccaa attttccaac
5461 tgaaggctta agccctagcc aggtcactat gttcccccac ataatagtag atgttagaca
5521 attggaacct gtgctgatcc ccttacccga tgttaggaat aatttctatc attacaacca
5581 gtcaaatgac tccactatta agttaatagc aatgttgtac acaccactta gggctaataa
5641 tgctggggat gatgttttca cagtttcgtg ccgagttctc acgagaccat cccccgattt
5701 tgatttcata tttttagtac cacccacagt tgagtcaaga actaaaccat tctctgtccc
5761 agttttaact gttgaggaga tgaccaattc aagattcccc atccctttgg aaaagttgtt
5821 cacaggcccc agcagtgcat ttgttgttca accacaaaac ggcagatgca caactgatgg
5881 cgtgctccta ggcaccaccc aactttctcc tgtcaacatc tgcaccttca gaggggatgt
5941 cacccacatc acaggtagtc gcaactacac tatgaatttg gcttctcaaa attggaacaa
6001 ctacgaccca acagaagaaa tcccagcccc cctaggaact ccagattttg tggggaagat
6061 tcaaggcatg ctcacccaaa ccacaaggac agatggttca acacgcggcc acaaagctac
6121 agtgtacact gggagcgccg actttgctcc aaaactgggt agagttcaat ttgaaactga
6181 cacagaccat gattttgaag ctaatcaaaa cacaaagttc accccagtcg gtgtcatcca
6241 agatggtagc accacccacc gaaacgaacc ccaacagtgg gtgctcccaa gttactcagg
6301 cagaaatact cacaatgtac atttggcccc cgctgtagct cccacctttc cgggtgagca
6361 acttctcttc ttcagatcca ccatgcccgg atgcagcgga taccccaaca tggatttgga
6421 ctgtctgctc ccccaggaat gggtgcagta cttctaccaa gaggcagccc cagcacaatc
6481 tgacgtggct ctgctaagat ttgtgaatcc agacacaggt agggttttgt ttgagtgcaa
6541 gcttcacaaa tcaggctatg ttacagtggc tcacactggt caacatgatt tggttatccc
6601 ccccaatggc tactttaggt ttgattcctg ggtcaaccag ttctacacgc ttgcccccat
6661 gggaaatgga acggggcgta gacgtgcagt ataatggctg gagctttctt tgctggattg
6721 gcatctgatg tccttggctc tggacttggt tcccttatca atgctggggc tggggccatc
6781 aaccaaaaag ttgagtttga aaataacaga aaattgcaac aagcatcctt ccaatttagc
6841 agcaatttgc aacaggcttc ctttcaacat gataaagaga tgctccaagc acaaattgag
6901 gccaccaaaa agctacaaca ggaaatgatg agagttaagc aggcaatgct cctagagggt
6961 gggttctctg agacagatgc agcccgcggg gcaattaacg cccccatgac gaaggctttg
7021 gactggagcg ggacaaggta ctgggctcca gatgctagaa ttacaacata caatgcaggc
7081 cacttttcca cccctcaacc atcgggggca ctgccaggaa gagctaatct tagggatgct
7141 gtccctgctc ggggaccctc caccaaacct tctaactctt ccactgccac ctctgtgtat
7201 tcaaatcaaa ctatttcaac gagacttggt tctacagctg gttctggaac cagtgtctcg
7261 agcctcccgt caactgcaag gactaggagc tgggttgagg atcaaaatag gaatttgtca
7321 cctttcatga ggggggccca caacatatca tttgtcaccc caccatctag caggtcctct
7381 agccaaggca cagtctcaac cgtgcctaaa gaaattttgg actcctggac tggcgctttc
7441 aacacgcgca ggcagcctct cttcgctcac attcgtaagc gaggggagtc acgggtgtga
7501 tgtgaaaaga caaaactgat tatctttctt tttcttttct ttagtgtctt ttaaaaaaa
//