Typing tool
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Typing tool
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Complete norovirus genomes
| LC769691 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5090
ORF2: 5071..6693
ORF3: 6693..7499
LOCUS LC769691 7558 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11170, nearly
complete genome.
ACCESSION LC769691
VERSION LC769691.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7558)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7558
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.4
Sydney[P16]/NICED-BCH-11170"
/isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-11170"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: North 24 Parganas"
/collection_date="2019-05-22"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5090
/gene="POL"
CDS <1..5090
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74117.1"
/translation="SNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA
PRDEPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVA
NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
RVELTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIK
PLNILNILATCDWTFAGIVESLILLAELFGIFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEE
LKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHA
RIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKS
EDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPAGIIEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGET
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMI
RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGL
KPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHED
PNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5071..6693
/gene="VP1"
CDS 5071..6693
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74118.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6693..7499
/gene="VP2"
CDS 6693..7499
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74119.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDAVPARGPSTKPS
NSSTATSVYSNQTISTRLGSTAGSGASVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag gaaaaatctt
61 caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc ggggctaggc
121 ccaaacagcc tgccccgaga gacgaaccac aaaagccccc aagaccacca actcccgagt
181 tggtcaagag gataccccct cctccaccta atggcgaaga agaagaagaa ccagtcatta
241 ggtatgaggt taagagtggg atctctggcc tgcccgagct cacaacagtc ccccaaccgg
301 acgtggccaa cacagcattt agtgttccac cactgagctt gagggaaaac agggaggcca
361 aggaaccgct aacaggggca atactagaga tgtgggacgg agagatatac cactatggcc
421 tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc ataagcatgg
481 caagagtgga gctgacgccg ctgtcattgt actggcgtgt ggtgtacact ccccaatacc
541 tcatctcccc tgaaactctc aagaggctca acggagaggc gtttccttac accgctttcg
601 acaacaactg ctatgccttt tgctgctggg tgttagacct caatgactca tggcttagca
661 ggaggatggt gcaaagaaca acgggcttct tcagacctta ccaagagtgg aacagaaaac
721 ccttgcctac catggatgac tccaaaataa agaaggtagc aaatatattc ctatgttcat
781 tgtccacatt attcaccaga cccataaaag acctcatagg aaaaattaaa ccattaaaca
841 tattgaacat cctggcaacg tgtgactgga cgtttgccgg aatagtggag tctctgatat
901 tgcttgctga actcttcgga attttctgga cacccccaga tgtgtctgct atgatcgctc
961 ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa ctcgtacctg
1021 tggtaatggg agggattggc ttggtgttgg gattcaccaa agagaaaatt ggcaaaatgt
1081 tgtcctcagc agcatcaaca ctcagggctt gtaaagatct tggtgcctat ggcttagaga
1141 tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat gagctagcca
1201 tggtgagggc catagaggat gccgtactag atcttgaggc aatagaaaat aaccacatga
1261 caaccctgtt gaaagataaa gacagcttag caacatacat gaaaacactg gacatggagg
1321 aggagaaagc cagaaggttg tccacaaaat ctgcatcccc tgacatagtt gggacaatca
1381 acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc aaggaagagc
1441 tgtctagcag gataaggcca gtagttgtta tgatatctgg caaaccagga ataggcaaaa
1501 ctcatctggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg gatcagagag
1561 tcggactcat accaagaaac ggtgtggacc attgggatgc atacaaaggt gagagagtcg
1621 tgttgtggga cgactatggc atgagtaacc ccattcatga tgctctccgc atacaagaat
1681 tggctgatac gtgtcccctt accttaaatt gtgacagaat tgaaaacaag ggaaaagttt
1741 ttgacagtga agtcataata attacaacaa accttgccaa cccagcccca cttgattatg
1801 ttaactttga ggcctgttcc aggagaattg atttcctggt gtacgctgag gcaccagaag
1861 tagaaaaggc aaaacgggat tttcctggtc agccagatat gtggaaggac gccttcaagc
1921 cggacttttc acacatcaag ctacagcttg cacctcaggg cggctttgac aagaatggca
1981 acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg attgcccgtg
2041 catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtccc acaatcacca
2101 ctttcaattt cgaccggaac agaatcacag cattcagaca attggctgca gaaaacaagt
2161 atggactggt ggataccatg aaagttggca atcaactaaa aggagtgaaa accatggaag
2221 aactcaaaca agcaatcagg aatgtgacca tcaagaggtg ccggatcatc tacggtggct
2281 ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag gtcaagaaca
2341 cctctataca gaccaacaac gagttggccg gggccctgca ccatcttaaa catgcccgaa
2401 tcaggtacta tgtcaaatgt gtgcaagaag cagtctattc catcatacaa attgccggcg
2461 ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc tggtcgaagc
2521 cacaattaga tcaaaatgaa tcagagacca aggaagaggc ccccaagtca gaagatgacg
2581 agttcatcat atcttctaag gatatcaagg aggaaggaaa gaagggcaaa aacaaaactg
2641 gtcgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgaa gagtatgacg
2701 agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag tatcttcaag
2761 acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa gacttctgtg
2821 aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa caaagaaagg
2881 aagagagggc cacactaggg ctggtaacag gttcagaaat cagaagaaga aaccctgatg
2941 atttcaaacc caaagggaag ctgtgggccg atgacaacag aagtgttgac tataatgaga
3001 aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt ggctctggct
3061 ggggcttctg ggtatcacca agcctgttca taacatcaac tcatgtgatc cctgcaggca
3121 taatagaagc atttggagtc cccatcaaac aaattcagat ccacaaatca ggtgaatttt
3181 gccgattcag attcccaaaa ccaattagac cagatgtgac aggaatgatc ttggaagaag
3241 gtgcgcctga aggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga gagctcatgc
3301 cccttgcagc cagaatggga acacacgcaa ccatgaagat tcaaggccgc atggttggcg
3361 gacagatggg tatgttgctc actggatcaa atgccaaagg aatggatttg ggaacaaccc
3421 ctggtgactg tggctgccct tacatctata aaaggggcaa tgactatata gtcattgggg
3481 tgcacactgc agcagcccgc ggtggaaaca ccgtcatctg tgccacacag ggaagtgagg
3541 gtgaggcaac tcttgagggt ggagatgata aaggaacata ctgtggggca cccattctag
3601 gccctggggg cgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca tcgaacacgc
3661 cccttccacc agggacatat gagcctgcct acctcggtgg ccgtgacccg cgtgttaggg
3721 gtgggccctc cttacagcag gtgatgagag accagttgaa gccattcact gaacccaggg
3781 gcaaacctcc aagaccaagt gttttggaag cagccaaaca aactattatt aatgtccttg
3841 aacaaaccct ggatcctcca caaaaatgga catacgcaca ggcgtgtgcc tcacttgaca
3901 aaaccacctc cagcgggcat ccccatcacg tccgaaagaa tgaattctgg aatggtgaga
3961 ccttcactgg taaattggca gaccaagcat caaaagcaaa cctaatgttt gaggaaggga
4021 aacacatgac accagtgtac acagcagcac tcaaggacga gctagttaag actgagaaaa
4081 tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc atgatccggt
4141 gcgctaggtc atttggtggg ctcatggacg agatgaaggc acactgcata tcactcccag
4201 tacgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa cattccagat
4261 acaaatacca ctatgatgca gactactctc gttgggattc aacacaacag agggcggtat
4321 tagcagcagc cttggaaatc atggtcagat tctccgcaga accacaattg gcacaaatag
4381 tcgctgagga tctactggcc cctagtgtag tagatgtagg agactttaaa atcacaataa
4441 atgaagggct cccatctggc gtgccatgca cttctcagtg gaactccatc gcacactggc
4501 tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt atacaagcaa
4561 attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata aaattggacc
4621 ctgaacagtt gaccgccaag ttgaaggagt acggcctgaa accaacccgc ccagacaaga
4681 ccgagggacc cctgatcatc agtgaagatt tgaacggact cactttcctc cgaaggacgg
4741 tgactcgtga cccagctggc tggtttggaa aactggacca aagttcaatt ttgaggcaga
4801 tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata ccccattctc
4861 aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga ccctctttct
4921 acagtagaat cagtaaattg gtcataactg aacttaaaga aggtgggatg gacttttacg
4981 tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc acgtgggagg
5041 gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgagtga cgccaaccca
5101 tctgatgggt ccgcagccaa cctcgtacca gaggtcaaca atgaggttat ggctttggag
5161 cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt aattgacccc
5221 tggattagaa ataattttgt acaagcccct ggtggggagt ttacagtatc ccctagaaat
5281 gctccaggtg aaatactatg gagcgcgccc ctaggccctg atctaaatcc ctacctatcc
5341 catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt aattctcgcg
5401 gggaacgcgt tcaccgccgg gaagattata tttgcagcag tcccaccaaa ttttccaact
5461 gaaggcttaa gccctagcca ggtcactatg ttcccccaca taatagtaga tgttagacaa
5521 ttggaacctg tgctgatccc cttacccgat gttaggaata atttctatca ttacaaccag
5581 tcaaacgact ccactattaa gttgatagca atgttgtaca caccacttag ggctaataat
5641 gctggggatg atgttttcac agtttcgtgc cgagttctca cgagaccatc ccccgatttt
5701 gatttcatat ttttagtacc acccacagtt gagtcaagaa ctaaaccatt ctctgtccca
5761 gttttaactg ttgaggagat gaccaattca agattcccca tccctttgga aaagttattc
5821 acaggcccca gcagtgcgtt tgttgttcaa ccacaaaacg gcagatgcac aactgatggc
5881 gtgctcctag gcaccaccca actttctcct gtcaacatct gcaccttcag aggggatgtc
5941 acccacatca caggtagtcg caactacact atgaatttgg cttctcaaaa ttggaacaac
6001 tacgacccaa cagaagaaat cccagccccc ctaggaactc cagattttgt ggggaagatt
6061 caaggcatgc tcacccaaac cacaaggaca gatggttcaa cacgcggcca caaagctaca
6121 gtgtacactg ggagcgctga ctttgctcca aaactgggta gagttcaatt tgaaactgac
6181 acagaccatg attttgaagc taatcaaaac acaaagttca ccccagtcgg tgtcatccaa
6241 gatggtagca ccacccaccg aaacgaaccc caacagtggg tgcttccaag ttactcaggc
6301 agaaatactc acaatgtaca tttggccccc gctgtagccc ccacctttcc gggtgagcaa
6361 cttctcttct tcagatccac catgcccgga tgcagcggat accccaacat ggatttggac
6421 tgtctgctcc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc agcacaatct
6481 gacgtggctc tgctaagatt tgtgaaccca gacacaggta gggttttgtt tgagtgcaag
6541 cttcacaaat caggctatgt tacagtggct cacactggcc aacatgattt ggttatcccc
6601 cccaatggtt actttaggtt tgattcctgg gtcaaccagt tctacacgct tgcccccatg
6661 ggaaatggaa cggggcgtag acgtgcagta taatggctgg agctttcttt gctggattgg
6721 catctgatgt ccttggctct ggacttggtt cccttatcaa tgctggggct ggggccatca
6781 accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc caatttagca
6841 gcaatttgca acaggcttcc tttcaacatg ataaagagat gctccaagca caaattgagg
6901 ccaccaaaaa gctacaacag gaaatgatga gagttaagca ggcaatgctc ctagagggtg
6961 ggttctctga gacagatgca gcccgcgggg caattaacgc ccccatgaca aaggctttgg
7021 actggagcgg gacaaggtac tgggctccag atgctagaat tacaacatat aatgcaggcc
7081 acttttccac ccctcaacca tcgggggcac tgccaggaag agctaatctt agggatgctg
7141 tccctgctcg gggaccctcc accaaacctt ctaactcttc tactgctacc tctgtgtact
7201 caaatcaaac tatttcaacg agacttggtt ctacagctgg ttctggagcc agtgtctcga
7261 gcctcccgtc aactgcaagg actaggagtt gggttgagga ccaaaacagg aatttgtcac
7321 ctttcatgag gggggcccac aatatatcat ttgtcacccc accatctagc agatcctcta
7381 gccaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact ggcgctttca
7441 acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca cgggtgtaat
7501 gtgaaaagac aaaactgatt atctttcttt ttcttttctg tagtgtcttt taaaaaaa
//