Typing tool
|
Complete norovirus genomes
LC769690 | GI.3 | ||
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GI.P13 |
ORF1: 1..5405 ORF2: 5389..7023 ORF3: 7023..7670LOCUS LC769690 7768 bp RNA linear VRL 17-OCT-2023 DEFINITION Norovirus GI Hu/IN/2019/GI.3[P13]/NICED-BCH-11157, nearly complete genome. ACCESSION LC769690 VERSION LC769690.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Doan,Y.H. TITLE Norovirus in India JOURNAL Unpublished REFERENCE 2 (bases 1 to 7768) AUTHORS Doan,Y.H. and Oka,T. TITLE Direct Submission JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of Infectious Diseases, Center for Emergency Preparedness and Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7768 /organism="Norovirus GI" /mol_type="genomic RNA" /strain="Norovirus GI/Hu/IN/2019/GI.3[P13]/NICED-BCH-11157" /isolate="Hu/IN/2019/GI.3[P13]/NICED-BCH-11157" /host="Homo sapiens" /db_xref="taxon:122928" /country="India: Kolkata" /collection_date="2019-05-20" /note="genotype: GI.3[P13]" gene <1..5405 /gene="POL" CDS <1..5405 /gene="POL" /codon_start=3 /product="nonstructural polyprotein" /protein_id="BEI74114.1" /translation="MASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQHGETT TKIKDANMALDLLRRSQTPSPSRQTNNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQ ESTARAWCDLSKEEKEEIMRNNEKLFDAGGVTPSDLPSTFERAAPSSATDMQQPVSWS SSDGVNLGINKLTTVRGPHWNMCPLPPLDARNSGPAKEPLIGDMIEFYEGHIFHYAIY IGQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNNQQRLTYEQLKELENEPWPYA AITNNCYEFCCKVMALDDTWLQRKLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAV LSAINGLVSQPFKNILSKIKPLNVLSLLSNCDWTFMGVVELVVLLAELFDVFWTPPDI SSFIASLLPDFHLQGPEDLARDLVPIILGGIGLAIGFTRDKITKVMKSAVDGLRSATQ LGQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYM NVLDCEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMM CGPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSK ITEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCR RVDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDNQGNTPFGK GVMKTTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTSLARANGLGFISMA TLGKKLRNVKTMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSSQH QAISTATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQPI LEGKHKEHNCRVHRAAAAGRGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGKN KGKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELA EVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTP PKNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAK EIFGENLNNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTILIRRDSGELL PLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVV CGVHAAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFW KSNPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAV ETVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGNSFVRELGDQAA HANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVVRAARAFGPFC EAIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNI MCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLC ALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDPNRLTQVLREYGLKPTRPDKTDG PIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQ RKVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEVYIPGWQAMFRWMRFHDLSLW TGDRDLLPDYVNDDGV" gene 5389..7023 /gene="VP1" CDS 5389..7023 /gene="VP1" /codon_start=1 /product="major capsid protein" /protein_id="BEI74115.1" /translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMDPVAGAATAVA TAGQINMIDPWIMSNFVQAPQGEFTVSPNNTPGDILFDLQLGPQLNPFLAHLAQMYNG WVGNMRVKVMLAGNAFTAGKIIISCIPPGFTSQNISIAQMTMFPHVIADVRVLEPIEI PLEDVRNVLFHTNDNKPTMRLVCMLYTPLRANGSSSGTDPFVIAGRVLTCPDSTFSFL FLVPPNVEQKTRPFSVPNIPLNTLSNSRVPSLIRSMTVSRDQNQVIQFQNGRVTLDGQ LQGTTPTSVSQLCKIRGTNYHAQGGSGINLTELNGEPYHAFESPAPIGFPDLGNCDWH LTATPTQAFNDGSKVVHMSVSQGAAFAPHLGTIHYTTNDTDYNPPTSIICTLDWLSQT AGQNNVDPWQIPSYGSTLTEAAQLAPPIYPPGFGETLVFFLSDFPISNGKNGLSVPCT LPQEFVTHFVNEQAPIRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNGSGGGPQT LPINGVFVFVSWVSRFYQLKPVGTAGAARRLGIRRS" gene 7023..7670 /gene="VP2" CDS 7023..7670 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BEI74116.1" /translation="MAQAMLGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN TFNHDKEMLAMQVEASTSLLQNSLNTRYNLLTQAGLTSADAARAVAGAPVTRVVDWNG TRIAAPLSTATTLRSGGFMSIPVMYRGAKTEQQKLTGFSNPNYGTGSSVSRTSQWVSS QNSMRSSVAPFHPDALRTTWVTPPGSSSTSTISSASSIPRFFNTERLPLFANNKR" ORIGIN 1 tgatggcgtc taacgacgct attgccgttg ctgatgtcag caataacaat gctaacacca 61 acaatgaaaa tattggatct cgcctcatgg cgaagatccg tgggcgcata ggcccacaac 121 atggtgaaac aaccacaaag atcaaagatg ccaacatggc gcttgacctc ctacgccggt 181 cgcaaacacc atctccaagt cggcaaacca acaatgacag tgcccctaag gcacaaaggg 241 accgtccccc acgaactgct tcagaagtaa agagggcact gggatgggat gctgaaccag 301 aacatcagga gagtacggct agggcatggt gtgacctctc aaaagaggag aaggaagaaa 361 taatgcgcaa caatgagaag ctctttgatg ctggaggtgt caccccatca gacctgccta 421 gcacatttga gagggctgcc ccaagtagtg ccactgacat gcaacaacca gtgtcatggt 481 cttctagtga cggggtcaat cttggcatca ataaattgac cactgtccgt ggcccacatt 541 ggaacatgtg tcccctacca ccgctggatg cacgtaacag tggtcctgcc aaggaacccc 601 ttatagggga catgattgag ttctacgaag gtcacatatt tcactatgcc atttacattg 661 gacaaggtaa aactattgga gtccactcac cacaggccgc tttctccata cccaggataa 721 ccatccaccc gttagtggcc tggtggcgtg tgtgttacgt ccccaacaac caacaacgcc 781 tcacctacga acaacttaag gaattggaaa atgaaccatg gccctatgcc gcaatcacca 841 acaactgtta tgagttttgt tgcaaggtga tggcgcttga tgacacctgg ctccaaagaa 901 aactagtcac tagtggaaag ttcaaccatc ccacacagga ctggtcacag gacaccccag 961 atttccatca ggactcgaag ttagagatgg tgagagacgc cgttttgtca gccatcaacg 1021 gccttgtgtc acaacctttt aagaatatcc tttcaaaaat taaaccacta aatgtgctca 1081 gcctcttatc aaattgtgac tggaccttta tgggcgttgt ggaactagtt gtactcctag 1141 cagagctgtt cgacgtgttc tggaccccac cggacatttc gagctttatt gcatctttat 1201 tgcctgactt ccacctacaa ggcccagaag acctagccag agacctagtc cctattatat 1261 taggtggcat aggtctggca attggtttca caagagacaa aataacaaaa gtgatgaaga 1321 gtgccgttga tgggttacgg tcagcaacac agcttgggca atatgggtta gagatattct 1381 caatcatcaa gaaatacttc tttggagggg accaaacaga aaagaccctg cggggcatcg 1441 aagatgcagt gatagacatg gaagtattgt ccagcactaa tgtgacacaa ttagtcaaag 1501 ataaaaagtt agccaaagct tacatgaatg tgctggactg tgaggaagaa aaagcgagga 1561 agctctcagt ccgtagtgct gacccacaca tagtaacctc tgtcaacaac ctgatatcac 1621 gcatttctat ggcaagatca gctctagcta aagcccaagc tgaaatgaca tcccgcccgc 1681 gaccagtggt cataatgatg tgtggtcctc ctggcatcgg taagaccaag gctgccgaac 1741 atctagccgg ccgactagcc gctgaaatca ggcctggagg taaggttggc cttgtacccc 1801 gggaatctat agaccactgg gatggatatc atggtgagga tgttttgctc tgggatgact 1861 atggcatgtc aaaaataaca gaggattgca acaagttgca ggctatagcc gacactgcac 1921 cactgtcgct caattgtgac aggatagaaa ataaaggtat gcaattctct tctgatgcaa 1981 taatcataac aaccaatgcc cctggcccag ccccggtgga ctttgtcaac ctaggccccg 2041 tgtgcagacg tgtggacttt ttagtttact gctccgcacc cgagattgaa cagacgcgga 2101 gggctcaccc aggtgacacc aatgccatca aggatctgtt taagaaggat ttctcacacc 2161 taaaaatgga actagcccca cagggcggtt ttgacaatca gggcaacaca ccttttggaa 2221 agggtgtcat gaaaaccaca acccttaaca gactgctgat acaggccaca gcgctagcca 2281 tggaacggca agatgaattc caacttcagg gggctgtcta caacttcgac gaggacagag 2341 tggccgcctt cactagtctg gctcgcgcta atggcctggg attcataagt atggcaacat 2401 tgggcaagaa actaaggaat gttaagacca tggaaggctt gcgcaacgca ctactgggct 2461 ataagattgg agagtgtgat ataatctgga acactagagt gtactcagtt aagagtgacg 2521 ggagcaatgt cacaattaaa gaaaaacaag caccatcctc atcccaacac caagctattt 2581 ctacagccac cttagcactg tccagactac gggctgccag ggctctcgca tacgcctctt 2641 gtctgcaaag tgctgtgttg tcaatacttc aggtggccgg ctctgctgta gtggtgagta 2701 gggccgtaaa acgcatgttt ggcacacgca ccgaacagcc cattctggaa ggcaagcaca 2761 aagaacacaa ctgcagagtg caccgtgcag cggctgccgg ccgtggtcct attggccatg 2821 atggaatcat tgaacgttat ggcctgtgtg agagtgagca ggaaggtgaa gatgatcaga 2881 ctgtagagct gcctaccgct gacaaagaag gcaaaaacaa aggcaaaacc aaaaagggcc 2941 gtgggcggaa gtctaatttt aatgcattct ctaggcgtgg gctcagtgat gaagagtatg 3001 aggagtacaa gaaagtaaga gaagagaagg gtggcaacta cagcatacaa gaataccttg 3061 aggaccgcca gcggtacgaa gaagaactcg ctgaggtgca agctggtgga gacggtggga 3121 tcggtgaaac tgaagcagaa atccgccatc gggtcttcta caaatcaaaa tctggcatga 3181 gaaaacaacg gcaagaggaa cgccgccagt tgggcctcgt gagcggtact gaaatccgca 3241 aacgtaagcc catagattgg acccccccca aaaatgactg gtcagaggac actagaactg 3301 tcaattatga tgaacacatt agctttgaag cccctccctc aatttggagc agagtagtta 3361 aatttggcag tggctggggt ttttgggtga gctcgacagt gttcatcacc acaacccatg 3421 ttataccacc tggtgctaag gaaatctttg gtgagaacct caacaacatt gccatccaca 3481 gggttggtga gttcacccag ttccgtttct caaagaaaat gaggcctgac ctctctggta 3541 tggtcctgga agagggttgc cctgaaggca cagtgtgcac catactgata agaagagact 3601 ctggagagct gctaccactg gctgtgcgca tgggagcagt ggcatcaatg aagattcagg 3661 gaaaactcat gcatggacag tcagggatgt tgctcactgg tgccaatgct aagggcatgg 3721 accttgggac catacctggg gactgtggag caccttacgt ccacaagaga gggaatgact 3781 gggtggtctg tggggtacat gcagcagcca cgaaatcagg caacaccgtg gtgtgcgcca 3841 tacaaggcgg tgagggtgaa gccacgttgg agggtggcgg acaaaataag ggtcactatg 3901 caggacatcc aatactaaga tatggaaatg gcccttcatt atcaaccaaa acaaaattct 3961 ggaaatcaaa ccctcagcct ctaccccccg gcacatatga accagcctat cttggtggca 4021 gggaccccag agtcgaaggt ggtccatctt tgcagcaagt gttgcgagac cagctaaagc 4081 catttgctga acctcgtggc aggctgcccg aggcaggatt gctggaagct gcggttgaga 4141 ccgtcaccaa tgcaatcgaa caggtcatgg atacaccagt ggcatggagt tacagcgatg 4201 cctgcatgtc cctagacaaa acaaccagtt ctggttaccc ccaccacaag agaaagaatg 4261 atgattggaa tggaaactcg tttgtgagag aactgggaga tcaagcagca cacgctaata 4321 gcatgtatga acttggtaag tccatgaagc cagtgtacac agcagcactc aaggatgaac 4381 tcgtcaagcc agacaaggtg tacaacaaaa ttaagaaaag gctactctgg ggagcagacc 4441 tcggcaccgt cgtccgtgcc gccagagctt ttggaccatt ttgtgaggcc ataaaacccc 4501 atgtgatcaa attacccatc aaagtgggca tgaatgccat agaggatggt cctctaattt 4561 atgcagaaca ctccaagtat aagtatcatt ttgatgctga ttacacagca tgggattcaa 4621 cacaaaatag agagatcatg atggagtctt ttaatatcat gtgtaaactc actgctaacc 4681 cttccctggc cgcagtagtg gcgcaggatc tgctttcccc ttctgaaatg gatgtcggtg 4741 attatgtgat cagtgtcaaa gatggcctac catctggctt tccatgcacc tcacaagtga 4801 acagcatcaa ccattggatc tacacgctgt gtgctctatc agaagtcact ggcttagccc 4861 ctgatgtaat acaatcacaa tcttatttct cattttatgg tgatgatgag atagtctcaa 4921 cagatattga atttgaccca aataggttaa cacaagtgct aagagagtat ggcttaaaac 4981 ccacaagacc tgacaagact gatggcccaa tcattgtgag acagcaagtc gatggcttgg 5041 ttttcctccg gcgcaccatc tcgaaagatg ccattggata ccagggacgc ctcgaccgaa 5101 attccattga gagacagctc tggtggactc gtgggcccaa ccatgatgat ccatttgaaa 5161 ccttagtccc acacacacag agaaaggtcc agctgatatc cctactaggt gaagctgcac 5221 tccatggtga gaaattctat agaaagatag ccagtagggt gatccaggaa gtcaaagagg 5281 gggggttgga agtctacatc cctgggtggc aggccatgtt ccgctggatg cgattccatg 5341 atttgagctt gtggacagga gaccgcgatc tcttgcccga ttatgtaaat gatgatggcg 5401 tctaaggacg ccccaacaaa catggatggc accagtggtg ccggtcagct ggtaccagag 5461 gcaaatacag ctgaacctat atcaatggat ccagtggctg gagccgcaac agcggtcgct 5521 actgctggac aaattaatat gattgacccc tggataatga gtaattttgt gcaggccccg 5581 caaggggaat tcactgtctc accaaataac acccctggag atattttgtt tgatttgcaa 5641 ttaggacccc aattaaatcc cttcctagcc cacttagccc agatgtataa tggttgggta 5701 ggcaatatgc gtgtgaaggt aatgcttgct ggcaacgctt ttaccgcggg gaaaataata 5761 attagctgca tacccccagg ctttacttcc caaaacattt ccattgctca aatgacaatg 5821 ttccctcacg ttattgctga cgtgagggtc ctagaaccta tagagatacc ccttgaggat 5881 gtgaggaatg tgctgtttca caccaatgac aataaaccaa caatgaggct cgtatgcatg 5941 ttgtacaccc ccctgcgagc caatggcagt tcttctggta cggatccttt tgtcatagct 6001 ggcagggtcc tcacctgtcc agattcaact tttagcttcc ttttcttagt accccccaat 6061 gttgagcaaa agactagacc ttttagtgtc cccaacatac ctttgaatac actgtcaaac 6121 tcaagggtgc catcattgat caggtccatg actgtctcta gagatcagaa tcaagtaatt 6181 cagttccaaa atggtagggt cacattggat ggtcaactgc agggtaccac acccacgtca 6241 gtgagccaat tgtgtaaaat tagaggcacc aattatcatg cacaaggggg tagtgggata 6301 aatttgacag agctgaatgg tgaaccttac catgcctttg agagtcccgc tccaataggg 6361 tttccagatc ttggcaattg tgattggcat ctcactgcaa cccccacgca ggctttcaac 6421 gacggatcaa aggtcgtgca catgtcagtc tcccaaggcg cagcctttgc cccacactta 6481 ggcaccatac attacaccac caatgacact gattataacc cccccaccag cataatttgt 6541 acactagatt ggctgtctca aactgctggc cagaacaatg tcgacccctg gcagatacca 6601 agttatggat caactttaac cgaggctgcc cagttggcac ctcctattta cccccctggg 6661 tttggtgaaa cattggtttt ctttctatca gatttcccta tttccaatgg caagaatgga 6721 cttagtgtgc cttgtaccct tccacaagaa tttgtcaccc actttgtgaa tgagcaggcc 6781 ccaattagag gagaggccgc cctcttgcat tatgtggatc ctgacactca tcgtaatctt 6841 ggtgagttca aattgtaccc agaaggtttt atgacttgtg ttcctaatgg tagtggtggt 6901 ggtcctcaaa ctttacctat taatggagtt tttgtctttg tttcttgggt ctctcgcttt 6961 tatcagttga agcctgtggg aacggccggc gcggctcgta ggcttggaat caggagatca 7021 taatggccca ggctatgttg ggagcaattg cggccacagc cgctggcagc gcagttggag 7081 caggcattca ggctggtact gaagctgctt tacaacatca gcgctttcaa caagatttga 7141 ccctacagag caatacattt aatcatgata aggaaatgct ggctatgcag gtggaggcat 7201 ctacttcttt actacaaaat agtttgaata ctcgctataa cttgttgacc caggcaggtc 7261 tgacttctgc agacgccgcc agagcagtgg cgggagcccc cgtcactcgt gtggtggact 7321 ggaatggcac tcgaatcgcc gctccactgt caactgccac cactctccgc tctggaggtt 7381 tcatgtccat accagtcatg tacagaggtg caaaaacaga acaacagaag ttgacaggct 7441 tttccaaccc caattacggg actggttcat ctgtgtcgcg cacgtcgcaa tgggtttctt 7501 cacaaaattc catgcggtct agcgtggcac cattccatcc agatgcactc aggacaacgt 7561 gggtcacacc gcctggttca tcttctactt ctactatttc ttcagcttca tctataccta 7621 gattctttaa tactgaaagg ttacccttgt tcgcaaacaa taagaggtga tttttgtaat 7681 atgaaaatgt gggcatcata ttcaattgga taaattttaa ttggttttat tatttaattg 7741 gtttaattgg ataaatttta attggttt //