Typing tool
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Typing tool
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Complete norovirus genomes
| LC769689 | GII.3 | |
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| GII.P16 |
ORF1: 1..5094
ORF2: 5075..6721
ORF3: 6721..7485
LOCUS LC769689 7542 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.3[P16]/NICED-BCH-11123, nearly
complete genome.
ACCESSION LC769689
VERSION LC769689.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7542)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7542
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus
GII/Hu/IN/2019/GII.3[P16]/NICED-BCH-11123"
/isolate="Hu/IN/2019/GII.3[P16]/NICED-BCH-11123"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: South 24 Parganas"
/collection_date="2019-05-15"
/note="genotype: GII.3[P16]"
gene <1..5094
/gene="POL"
CDS <1..5094
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74111.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDEPQKPLRPSTPELVKRIPPPPPNGEEGEEPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK
IRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGVGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLK
HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKGEAP
KSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQVVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGILDQSSILRQMYWTRGPNH
EDPSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPDFVNEDGVE"
gene 5075..6721
/gene="VP1"
CDS 5075..6721
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74112.1"
/translation="MKMASSDAVPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPVDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRTSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTISGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6721..7485
/gene="VP2"
CDS 6721..7485
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74113.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRPTPNFKTNQAPKSTPSSGSTVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNI"
ORIGIN
1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa
61 tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc cctcggggct
121 aggcccaaac agcctgcccc gagagacgaa ccacaaaagc ccctaaggcc atcaactccc
181 gagttggtca agaggatacc ccctcctcca cctaatggcg aagaaggaga agaaccagtc
241 attaggtacg aggttaagag tgggatctct ggcctgcccg agcttacaac agtcccccaa
301 ccggacgtgg ccaacacggc atttagtgtc ccaccactga gcttgagaga aaacagggag
361 gccaaggaac cgttaacagg ggcaatatta gagatgtggg atggagagat ataccactat
421 ggcctgtacg tggagaaagg cctagtgttg ggtgtgcaca aaccacctgc agccataagc
481 atggcaagag tggagctggc gccgctgtca ttgtactggc gtgtggtgta cactccccaa
541 tacctcatct cccctgaaac tctcaggagg ctcaacggag aggcgttccc ttacaccgcc
601 tttgacaaca actgctacgc cttttgctgc tgggtattag acctcaatga ctcatggctt
661 agcaggagga tggtgcaaag aacaacgggc ttcttcaggc cttaccaaga gtggaacaga
721 aaacccctgc ctaccatgga tgactccaaa attaagaagg tagcaaatat attcctatgt
781 tcactgtcca cattattcac cagacccata aaagacctca taggaaaaat tagaccatta
841 aacatattga acatcctagc aacgtgtgac tggacgtttg ccggaatagt ggagtctctg
901 atattacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc tgctatgatc
961 gctcccttac tcggggacta cgagttgcaa gggccggaag acctcgccgt tgagctcgta
1021 cctgtagtaa tgggaggggt tggtttggtg ttgggattca ccaaagagaa aattggcaaa
1081 atgttgtcat cagcagcatc aacactcagg gcttgcaaag atcttggtgc ctatggctta
1141 gagatactca aattggtcat gaagtggttc ttcccaaaga aagaggaggc caatgagcta
1201 gccatggtga gggccataga ggatgccgta ctagatcttg aggcaataga aaataaccac
1261 atgacaaccc tgttaaaaga caaagacagc ttagcaacat acatgaaaac actggacatg
1321 gaggaggaga aagccagaag gttgtccaca aagtctgcat cccctgacat agttgggaca
1381 atcaacgccc tgctggctcg aatagcagcg gccaggtcat tagtccacag ggccaaagaa
1441 gagctatcta gcaggataag accagtagtt gttatgatat ctggcaaacc aggaataggc
1501 aaaactcatc tggccaggga ggtggcaaga aaggtggcat ccactctcac aggggatcaa
1561 agagtcggac tcataccaag gaacggcgtg gaccattggg atgcatacaa aggtgagaga
1621 gtcgtgctgt gggacgacta cggcatgagt aaccccattc atgatgctct tcgcatacaa
1681 gaattagctg atacgtgtcc ccttacctta aattgtgaca gaattgaaaa taagggcaaa
1741 gtctttgaca gtgaagtcat aataattaca acaaaccttg ccaatccagc cccacttgat
1801 tatgtcaact ttgaggcctg ttccaggaga attgatttcc tggtgtacgc tgaggcacca
1861 gaagtagaaa aggcaaaacg ggactttcct ggtcagccag acatgtggaa ggacgccttc
1921 aagccggact tttcacacat caagctacag cttgcacctc agggcggctt tgacaaaaat
1981 ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggttc tctgattgcc
2041 cgcgcatcag gcctactgca tgagaggatg gatgaatttg aactccaagg tcccacaatc
2101 accaccttca atttcgaccg gaacagagtc acagcattca ggcaattggc tgcagaaaac
2161 aagtatggat tggtggacac catgaaagtt ggcaatcaac taaaaggagt gaaaaccatg
2221 gaagaactca aacaagcaat caggaatgtg accatcaaga ggtgccggat catctacggt
2281 ggctccacgt atgaccttga atctgacggc aagggcaaag ttttggtgga gaaagtcaag
2341 aacacctctg tacagaccaa caacgagttg gccggggccc tgcaccatct caaacatgcc
2401 cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct attccatcat acaaattgcc
2461 ggcgctgcgt ttgttaccac gcgcattgca cgccgcatga acatacaaga actatggtcg
2521 aagccacaat tagatcaaaa tgaatcagag actaaaggag aggcccccaa gtcagaagat
2581 gacgagttca tcatatcttc taaggacatc aaggaggagg gaaagaaggg caaaaacaaa
2641 actggccgtg gcaagaaaca cactgcattt tccagcaagg gcttgagcga tgaggagtac
2701 gacgagtaca agaggataag agaagagaga aatgggaagt actctataga ggagtatctt
2761 caagacagag acaggtacta tgaggagctc gccatcgcca aggctacgga agaagatttc
2821 tgtgaagagg aggagatcaa aatccgtcag agaattttcc gtcccaccag gaagcaaaga
2881 aaggaagaga gggccacatt agggctagta acaggttcag aaatcagaaa aagaaaccct
2941 gatgacttca aacccaaagg gaagctgtgg gccgatgaca acagaagtgt tgactacaat
3001 gagaaactgg actttgaggc ccccccaagc atatggtcta ggattgtgag ctttggttct
3061 ggctggggtt tctgggtatc accaagcttg ttcataacat caactcatgt aatccccgca
3121 ggcataacag aagcatttgg agtccccatc aaacaaattc agatccacaa atcaggtgaa
3181 ttttgccgat tcagattccc aaaaccaatt agaccagatg tgacaggaat gatcttagaa
3241 gaaggtgcgc ctgaaggcac cgtggcgact gtgctcatca aacgtcccac cggagagctc
3301 atgcctcttg cagccagaat gggaacacac gcaaccatga aaattcaagg ccgcatggtt
3361 ggcggacaga tgggtatgtt gctcactgga tcaaatgcta aaggaatgga tttgggaaca
3421 actcctggtg actgtggttg tccttacatc tataaaaggg gcaatgatta tatagtcatt
3481 ggggtgcaca ctgcagcagc ccgtggtgga aacaccgtca tctgtgccac acagggaagt
3541 gagggtgagg caactctcga gggtggagat gacaaaggga catactgtgg ggcacccatt
3601 ctaggccctg ggggtgcacc aaaattgagc accaaaacca aattttggag gtcatcgaac
3661 acgccccttc caccagggac atatgaacct gcctatctcg gtggccgcga tccgcgtgtt
3721 aagggtgggc cctccttgca gcaggtgatg agagaccagt tgaagccatt cactgaaccc
3781 aggggcaaac ctccaagacc aagtgtattg gaagcagcca aacaaaccat tattaatgtc
3841 ctcgaacaaa ccctggaccc tccacaaaaa tggacatacg cacaggcgtg tgcctcactt
3901 gacaaaacca cctccagcgg gcatccccat cacgtccgaa agaatgaatt ctggaatggt
3961 gaaaccttca ctggtaaatt ggcagatcaa gcgtcaaagg caaacctaat gtttgaggaa
4021 gggaaacata tgacaccagt gtatacagca gcactcaagg acgagctagt caagactgag
4081 aaaatctatg gaaagatcaa gaagagactg ctctggggct ctgacttgtc caccatgatc
4141 cggtgcgcta ggtcatttgg tgggctcatg gacgagatga aggcacactg catatcactc
4201 ccagtacgag ttggcatgaa tatgaatgaa gatggtccaa taatatttga gaagcattcc
4261 agatacaaat accactatga tgcagactac tctcgttggg attcaacaca acagagggca
4321 gtactagcgg cagccttgga aatcatggtt agattctctg cagaaccaca attggcacaa
4381 gtagtcgctg aggatctgct ggcccctagt gtagtagatg taggagactt caaaatcaca
4441 ataaatgaag ggctcccatc tggtgtgccg tgcacttctc aatggaactc tatcgcacac
4501 tggctgctaa ctctctgcgc cttgtctgaa gtcaccaaat tgtcccctga catcatacag
4561 gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga cataaaattg
4621 gaccctgaac agttaaccgc caaattgaag gagtacggcc tgaaaccaac ccgcccagac
4681 aagaccgagg gacccctgat catcagtgag gatttgaacg gactcacttt cctccgaagg
4741 acggtgactc gtgacccagc tggctggttt gggatactgg accaaagctc aattttgagg
4801 cagatgtact ggactagagg accaaatcat gaagacccca gtgagacaat gataccccat
4861 tctcaaagac ccatacagct catggcactg cttggtgaag cctctcttca cggaccctct
4921 ttctacagta aaatcagtaa attggtcata actgaactca aagaaggtgg gatggacttt
4981 tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg
5041 gagggcgatc gcaatctggc tcccgatttt gtgaatgaag atggcgtcga gtgacgccgt
5101 tccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg caatggcgct
5161 ggagccagtg gcgggtgcag cgatagcagc acccctcact ggtcagcaaa atataattga
5221 tccctggatt atgaataatt ttgtgcaagc acctggtggt gagtttacag tgtcccctag
5281 aaattcccct ggtgaagtcc ttcttaattt ggaactgggc ccagaaataa atccctattt
5341 ggcccatctt gctagaatgt ataatggcta tgcaggtgga tttgaagtgc aggtggtcct
5401 agctggaaat gcgtttacag caggaaagat aatctttgca gccatccccc ccaattttcc
5461 agttgacaat ttaagtgcag cacagatcac aatgtgccca catgtgatcg tggatgtcag
5521 gcagttggaa ccagtcaacc tcccgatgcc tgacgttcgc aacaacttct ttcattataa
5581 ccaagggtct gactcgaggt tacgtctaat tgcaatgctg tacacacctc ttagggcgaa
5641 caattctggg gatgatgttt ttactgtgtc ttgtagagtg ttaactagac ctagtcctga
5701 tttctcattc aacttccttg tgccacctac tgtggagtca aagacaaaac ccttttccct
5761 ccctatcctg actatctctg agatgtccaa ttctaggttc ccagtaccaa ttgattccct
5821 acataccagc cctactgaaa atattgttgt tcagtgccaa aatgggcgcg tcacccttga
5881 tggtgaactg atgggcacca cccaactctt gcctagccaa atctgtgctt tcaggggcgt
5941 tctcaccaga tcaacaagca gaaccagtga ccaggccgat acagcaaccc ctagattgtt
6001 taattattat tggcatatac aattggataa tctaaatgga accccttatg atcctgcaga
6061 agacatacca ggccccttag ggacaccaga tttccgtggc aaagtctttg gcgtggccag
6121 ccagagaaat cctgatgcca cgactagggc gcatgaggca aagatagaca ccatatctgg
6181 ccgcttcacc ccaaagctag gttcattaga gatatccact gagtctagtg attttgacca
6241 aaaccaaccg acaagattca ccccagttgg cattggagtt gaccatgagg cagactttca
6301 acaatggacc ctacccgact atgctggtca gttcacacac aacatgaact tagccccagc
6361 tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacatt tgccatcttc
6421 tggtgggcga tccaacggga ttctagactg cctggttccc caagaatggg tacagcactt
6481 ctaccaagag tcagccccct ctcagtctca agtggccctg gttaggtatg ttaatcctga
6541 cactggcaga gtgttatttg aggctaagct acataaacta ggtttcatga ctatagccaa
6601 gaatggtgat tctccaataa ctgtccctcc aaatggatac tttaggtttg aatcttgggt
6661 gaaccccttt tacacacttg cccccatggg aactgggaat gggcgcagaa ggattcaata
6721 atggctggag cttttatagc aggattggct ggtgacatgc ttacaaatac tgtaggatct
6781 ttagttaatg caggagctaa tgctattaat caaacaattg attttgaaaa taataaatat
6841 ttgcaaaatg cttcttttaa tcatgataaa gagatgttga atgcacaagt tgaggcaaca
6901 aagaagttac aggctgacat gattgctatc aaacaagggg ctttgaccgc tggcggcttc
6961 tcccctactg atgcagcccg tggggcaatt aacgccccca tgacaaaagt cctagattgg
7021 aatggaacga gatactgggc accaggtgcc acctccacga cctcgatgtc gggtggcttt
7081 acacatcaaa ctgtgcacag acccacacca aattttaaaa cgaaccaggc tcccaaatcc
7141 acacccagca gtggatctac agtgaggtca aactcaaccc aaatcactag cctgagctca
7201 cactcgtccg ggtcgtctcg gtccagcggg tctacagtca tcagctcaat accatcctct
7261 aacaggacta gggactgggt caaccaacaa aattttaact tggaaccaca catgcctgga
7321 tcccttagga cagcttttgt ctctccacca tctagtacag cctctagctc aggcacagtc
7381 tcaactgtgc ccaaaaatgt tttggactcc tggacatctg cgttcaacac gcgcagacag
7441 ccgctatttg cacaccttcg cagaaggggg gagtcaaata tttagtgaaa agattatttt
7501 aaatttggtt taaattaggt ttaatttgga atcttttaaa aa
//