Typing tool
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Typing tool
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Complete norovirus genomes
| LC769688 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5093
ORF2: 5074..6696
ORF3: 6696..7502
LOCUS LC769688 7565 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10957, nearly
complete genome.
ACCESSION LC769688
VERSION LC769688.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7565)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7565
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.4
Sydney[P16]/NICED-BCH-10957"
/isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10957"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: South 24 Parganas"
/collection_date="2019-04-16"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5093
/gene="POL"
CDS <1..5093
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74108.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDEPQKPPRPPTPELVKRIPPPPPNGEEEGEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTVDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVEIVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPSETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5074..6696
/gene="VP1"
CDS 5074..6696
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74109.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6696..7502
/gene="VP2"
CDS 6696..7502
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74110.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDVVPARGPSTKSS
NSSTATSVFSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaggaaaaat
61 cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc ctcggggcta
121 ggcccaaaca acctgccccg agagacgaac cacaaaagcc cccaagacca ccaactcccg
181 agttggtcaa gaggataccc cctcctccac ctaatggcga agaagaagga gaaccagtca
241 ttaggtatga ggttaagagt gggatctctg gcctgcccga gctcacaaca gtccctcaac
301 cggacgtggc caacacagca tttagtgttc cgccactgag cttgagagaa aacagggagg
361 ccaaggaacc gctaacaggg gcaatactag agatgtggga cggagagata taccactatg
421 gcctgtacgt ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca
481 tggcaagagt ggagctgacg ccgctgtcat tgtactggcg tgtggtgtac actccccaat
541 acctcatctc ccctgaaact ctcaggaggc tcaacggaga agcgttccct tacaccgcct
601 tcgacaacaa ctgctatgcc ttttgctgct gggtgctaga cctcaatgac tcatggctta
661 gcaggaggat ggtgcaaaga acaacgggct tcttcagacc ttaccaagag tggaacagaa
721 aacccttgcc taccgtggat gactccaaaa taaagaaggt agcaaatata ttcctatgtt
781 cattgtccac attattcacc agacccataa aagaccttat aggaaaaatc aaaccattaa
841 acatattgaa catcctggca acgtgtgact ggacgtttgc cggaatagtg gagtctctga
901 tattgcttgc cgaactcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg
961 ctcccttact cggggactac gagttgcaag ggccagaaga ccttgccgtt gaaattgtac
1021 ctgtggtaat gggagggatt ggtttggtgt tgggattcac caaagagaaa attggcaaaa
1081 tgttgtcctc agcagcatca acactcaggg cttgtaaaga tcttggtgcc tacggcttag
1141 agatactcaa attggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagctag
1201 ccatggtgag ggccatagag gatgccgtat tagatctaga ggcaatagaa aataaccaca
1261 tgacaaccct gttgaaagac aaagacagct tagcaacata catgaaaaca ctggacatgg
1321 aggaggagaa agccagaagg ttgtccacaa aatctgcatc ccctgacata gttggaacaa
1381 tcaacgccct gctggctcga atagcagcgg ccaggtcatt agtccacagg gccaaggaag
1441 agctgtctag caggataaga ccagtagttg tcatgatatc tggcaaacca ggaataggca
1501 aaactcatct ggccagggag gtggcaagaa aggtggcatc cactctcaca ggggaccaaa
1561 gagtcggact cataccaaga aacggtgtgg accattggga tgcatacaaa ggtgagagag
1621 tcgtgctgtg ggacgactat ggcatgagca accccattca tgatgctctt cgcatacaag
1681 aattggctga tacgtgtccc cttaccttaa attgtgacag aattgaaaat aagggaaaag
1741 tttttgacag tgaagtcata ataattacaa caaaccttgc caacccagcc ccacttgatt
1801 atgtcaactt tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct gaggcaccag
1861 aagtagaaaa ggcaaaacgg gattttcctg gtcagccaga tatgtggaag gacgccttca
1921 agccggactt ttcacacatc aagctacagc ttgcacctca gggcggcttt gacaagaatg
1981 gtaacacccc acatgggaaa ggagtgatga agaccctcac taccggttct ctgattgccc
2041 gtgcatcagg cctactgcat gagaggatgg atgaatttga actccaaggt cccacaatca
2101 ccactttcaa tttcgaccgg aacagaatca cagcattcag acaattggct gcagaaaaca
2161 agtatggatt ggtggacacc atgaaagttg gcaatcaact aaagggagtg aaaaccatgg
2221 aagaactcaa acaagcaatc aggaatgtga ccattaagag gtgccggatc atctacggtg
2281 gctccacgta tgaccttgaa tctgatggca agggcaaagt tttggtggaa aaggtcaaga
2341 acacttctgt acagaccaac aacgagttgg ccggggccct gcaccatctt aaacacgccc
2401 gaatcaggta ttatgtcaaa tgtgtgcaag aagcagtcta ctccatcata caaattgccg
2461 gcgctgcgtt tgtcaccacg cgcattgcac gccgcatgaa tatacaagaa ctctggtcga
2521 agccacaatt agatcaaaat gaatcagaga ctaaggaaga ggcccccaag tcagaagatg
2581 acgagttcat catatcttct aaggacatca aggaggaagg aaagaagggc aaaaacaaaa
2641 ctggccgtgg caagaaacac actgcattct ccagcaaggg cttgagcgat gaggagtatg
2701 acgagtacaa gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc
2761 aagacagaga caggtactat gaggagctcg ccattgccaa ggctacggaa gaagacttct
2821 gtgaagagga ggaaatcaaa atccgtcaga gaattttccg tcccaccagg aaacaaagaa
2881 aggaagagag ggccacattg gggctggtaa caggttcaga aatcagaaaa agaaaccctg
2941 atgatttcaa acccaaaggg aagctgtggg ccgatgacaa cagaagtgtt gactacaatg
3001 agaaactgga ctttgaggcc cccccaagca tatggtctag gattgtgagc tttggttctg
3061 gctggggctt ctgggtatca ccaagcctgt tcataacatc aactcatgta atccccgcag
3121 gtataacaga agcatttggg gtccccatca aacaaattca gatccacaaa tcaggtgaat
3181 tttgccgatt cagattccca aaaccaatta gaccagatgt gacaggaatg atcttggaag
3241 aaggtgcgcc tgaaggcacc gtggcaactg tgctcatcaa acgccccacc ggtgaactca
3301 tgcctcttgc agccagaatg ggaacacacg caaccatgaa gattcaaggc cgcatggttg
3361 gcggacagat gggtatgttg ctcactggat caaatgctaa aggaatggat ttgggaacaa
3421 ctcctggtga ctgtggctgc ccttacatct ataaaagggg caatgactat atagtcattg
3481 gggtgcacac tgcagcagcc cgtggtggaa acaccgtcat ctgtgctaca cagggaagtg
3541 agggtgaggc aactcttgag ggtggagatg acaaaggaac atactgtggg gcacccattc
3601 taggccctgg gggtgcacca aaattgagca ccaaaaccaa attttggagg tcatcgaaca
3661 cgccccttcc accagggaca tatgagcctg cctacctcgg tggccgtgat ccgcgtgtta
3721 agggtgggcc ctccttacag caggtaatga gagaccagtt gaagccattc actgaaccca
3781 ggggcaaacc tccaagacca agtgttttgg aagcagccaa acaaaccatt atcaatgtcc
3841 tcgaacaaac cctggatcct ccacaaaaat ggacatacgc acaggcgtgt gcctcacttg
3901 acaaaaccac ctccagcggg cacccccatc acgtccgaaa gaatgaattc tggaatggtg
3961 agaccttcac tggtaaattg gcagaccaag catcaaaagc aaacctaatg ttcgaggaag
4021 ggaaacacat gacaccagtg tatacagcag cacttaagga cgagctagtc aagactgaga
4081 aaatctatgg aaagatcaag aagagactgc tctggggctc tgacttgtcc accatgatcc
4141 ggtgcgctag gtcatttggt gggctcatgg acgagatgaa ggcacactgc atatcactcc
4201 cagtacgagt tggcatgaat atgaatgaag acggcccaat aatatttgag aaacattcca
4261 gatacagata ccactatgat gcggactact ctcgttggga ttcaacacaa cagagggcag
4321 tactagcagc agccttggaa atcatggtca gattctctgc agaaccacaa ttggcacaaa
4381 tagtcgctga ggacctactg gcccctagtg tagtagatgt aggagatttt aaaattacaa
4441 taaatgaggg gctcccatct ggtgtgccat gcacttctca atggaactcc atcgcacact
4501 ggctgctaac tctctgtgcc ttgtctgaag tcaccaagct gtcccctgac attatacaag
4561 caaattccat gttctcattt tacggtgatg acgagattgt cagcaccgac ataaaattgg
4621 accctgaaca gttgaccgcc aagttgaagg agtacggcct gaaaccaacc cgcccagaca
4681 agaccgaggg acccctgatc atcagtgaag atttgaacgg actcactttc ctccgaagga
4741 cggtgactcg tgacccagct ggctggtttg ggaaactgga ccaaagttca attttgaggc
4801 agatgtactg gactagagga ccaaatcatg aagaccccag tgagacaatg ataccccatt
4861 ctcaaagacc catacagctc atggcactgc ttggtgaagc ctctcttcac ggaccctctt
4921 tctacagtag aatcagtaaa ttggtcataa ctgaacttaa agaaggtggg atggactttt
4981 acgtgccaag gcaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg
5041 agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgag tgacgccaac
5101 ccatctgatg ggtccgcagc caacctcgta ccagaggtca acaatgaggt tatggctttg
5161 gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa tgtaattgac
5221 ccctggatta gaaataattt tgtacaagcc cctggtgggg agtttacagt atcccctaga
5281 aatgctccag gtgaaatact gtggagcgcg cccctaggcc ctgacctaaa tccctaccta
5341 tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc
5401 gcggggaacg cgttcaccgc cgggaagatt atatttgcag cagtcccacc aaactttcca
5461 actgaaggct taagtcctag ccaggttact atgttccccc atataatagt agatgttaga
5521 caattagaac ctgtgctaat tcccttaccc gatgttagga ataatttcta tcattataat
5581 cagtcaaatg attccactat taagttgata gcaatgttgt acacaccact tagggctaat
5641 aatgctgggg atgatgtttt cacagtttcg tgccgagttc ttacgagacc atctcccgat
5701 tttgatttta tatttttagt accacccaca gttgagtcaa gaactaaacc attctctgtc
5761 ccagttttaa ctgttgagga gatgaccaat tcaagattcc ccatcccttt ggaaaagttg
5821 ttcacaggcc ccagcagtgc atttgttgtt caaccacaaa acggcagatg cacaactgat
5881 ggcgtgctcc taggcaccac ccaactttct cctgtcaaca tctgcacctt cagaggggat
5941 gtcacccaca tcacaggtag tcgcaactac acaatgaatt tggcttctca aaattggaac
6001 aactatgacc caacagaaga aatcccagcc cctctaggaa ctccagattt tgtggggaag
6061 attcaaggca tgctcaccca gaccacaagg acagatggtt caacacgcgg ccacaaagct
6121 acagtgtaca ctgggagcgc cgactttgca ccaaaactgg gtagagttca atttgaaact
6181 gacacagacc atgattttga agctaatcaa aacacaaagt tcaccccagt cggtgtcatc
6241 caagatggta gcaccaccca ccgaaacgaa ccccaacagt gggtgctccc aagttactca
6301 ggcagaaata ctcacaatgt acatttggcc cccgctgtag cccccacctt tccgggtgag
6361 caacttctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa catggatttg
6421 gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacag
6481 tctgatgtgg ctctgctaag atttgtaaat ccagacacag gtagggtttt gtttgagtgc
6541 aagcttcaca aatcaggcta tgtcacagtg gctcacactg gccaacatga tttggttatc
6601 ccccccaatg gttactttag gtttgattcc tgggtcaacc agttctacac gcttgccccc
6661 atgggaaatg gaacggggcg tagacgtgca gtataatggc tggagctttc tttgctggat
6721 tggcatctga tgtccttggc tctggacttg gttcccttat caatgctggg gctggggcca
6781 tcaaccaaaa agttgagttt gaaaataata gaaaattgca acaagcatcc ttccaattta
6841 gcagcaattt gcaacaggct tcttttcaac atgataaaga gatgctccaa gcacaaattg
6901 aggccaccaa aaagctacaa caggaaatga tgagagttaa gcaggcaatg ctcctagagg
6961 gtggattctc tgagacagat gcagcccgcg gggcaattaa tgcccccatg acaaaagctt
7021 tggactggag cggaacaagg tactgggctc cagatgctag aattacaaca tacaatgcag
7081 gccacttttc cacccctcaa ccatcggggg cactgccagg aagagctaat cttagggatg
7141 ttgtccctgc tcggggacct tccactaaat cttctaactc ttctactgcc acctctgtgt
7201 tctcaaatca aactacttca acgagacttg gttctacagc tggttctgga accagtgtct
7261 cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaaat aggaatttgt
7321 cacctttcat gaggggggcc cacaacatat catttgtcac cccaccatct agcagatcct
7381 ctagccaagg cacagtctca accgtgccta aagaaatttt ggactcctgg actggcgctt
7441 tcaacacgcg caggcagcct ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt
7501 aatgtgaaaa gacaaaactg attatttttc tttttctttc ctttagtgtc ttttaaaaaa
7561 aaaaa
//