Typing tool
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Typing tool
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Complete norovirus genomes
| LC769687 | GI.3 | |
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| GI.P13 |
ORF1: 2..5410
ORF2: 5394..7028
ORF3: 7028..7675
LOCUS LC769687 7775 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GI Hu/IN/2019/GI.3[P13]/NICED-BCH-10892, nearly complete
genome.
ACCESSION LC769687
VERSION LC769687.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7775)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7775
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Norovirus
GI/Hu/IN/2019/GI.3[P13]/NICED-BCH-10892"
/isolate="Hu/IN/2019/GI.3[P13]/NICED-BCH-10892"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="India: North 24 Parganas"
/collection_date="2019-04-03"
/note="genotype: GI.3[P13]"
gene 2..5410
/gene="POL"
CDS 2..5410
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74105.1"
/translation="MMMASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQHGE
TTTKIKDANMALDLLRRSQTPSPSRQTNNDSVPKAQRDRPPRTASEVKRALGWDAEPE
HQESTARAWCDLSKEEKEEIMRNNEKLFDAGGVTPSDLPSTFERAAPSSATDMQQPVS
WSSSDGVNLGINKLTTVRGPHWNMCPLPPLDARNSGPAKEPLIGDMIEFYEGHIFHYA
IYIGQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNNQQRLTYEQLKELENEPWP
YAAITNNCYEFCCKVMALDDTWLQRKLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRD
AVLSAINGLVSQPFKNILSKIKPLNVLSLLSNCDWTFMGVVELVVLLAELFDVFWTPP
DISSFIASLLPDFHLQGPEDLARDLVPIILGGIGLAIGFTRDKITKVMKSAVDGLRSA
TQLGQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKA
YMNVLDCEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVI
MMCGPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGM
SKITEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPV
CRRVDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDNQGNTPF
GKGVMKTTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTSLARANGLGFIS
MATLGKKLRNVKTMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSS
QHQAISTATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQ
PILEGKHKEHNCRVHRAAAAGRGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEG
KNKGKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEE
LAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDW
TPPKNDWSEDTRAVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPG
AKEIFGENLNNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTILIKRDSGE
LLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDW
VVCGVHAAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTK
FWKSNPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEA
AVETVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGNSFVRELGDQ
AAHANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVVRAARAFGP
FCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESF
NIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYT
LCALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDPNRLTQVLREYGLKPTRPDKT
DGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPH
TQRKVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEVYIPGWQAMFRWMRFHDLS
LWTGDRDLLPDYVNDDGV"
gene 5394..7028
/gene="VP1"
CDS 5394..7028
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74106.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMDPVAGAATAVA
TAGQINMIDPWIMSNFVQAPQGEFTVSPNNTPGDILFDLQLGPQLNPFLAHLAQMYNG
WVGNMRVKVMLAGNAFTAGKIIISCIPPGFTSQNISIAQMTMFPHVIADVRVLEPIEI
PLEDVRNVLFHTNDNKPTMRLVCMLYTPLRANGSSSGTDPFVIAGRVLTCPDSTFSFL
FLVPPNVEQKTRPFSVPNIPLNTLSNSRVPSLIRSMTVSRDQNQVIQFQNGRVTLDGQ
LQGTTPTSVSQLCKIRGTNYHAQGGSGINLTELNGEPYHAFESPAPIGFPDLGNCDWH
LTATPTQAFNDGSKVVHMSVSQGAAFAPHLGTIHYTTNDTDYNPPTSIICTLDWLSQT
AGQNNVDPWQIPSYGSTLTEAAQLAPPIYPPGFGETLVFFLSDFPISNGKNGLSVPCT
LPQEFVTHFVNEQAPIRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNGSGGGPQT
LPINGVFVFVSWVSRFYQLKPVGTAGAARRLGIRRS"
gene 7028..7675
/gene="VP2"
CDS 7028..7675
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74107.1"
/translation="MAQAMLGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLAMQVEASTSLLQNSLNTRYNLLTQAGLTSADAARAVAGAPVTRVVDWNG
TRIAAPLSTATTLRSGGFMSIPVMYRGAKTEQQKLTGFSNPNYETGSSVSRTSQWVSS
QNSMRSSVAPFHPNALRTTWVTPPGSSSTSTISSASSIPRFFNTERLPLFANNKR"
ORIGIN
1 aatgatgatg gcgtctaacg acgctattgc cgttgctgat gtcagcaata acaatgctaa
61 caccaacaat gaaaatattg gatctcgcct catggcgaag atccgtgggc gtataggccc
121 acaacatggt gaaacaacca caaagatcaa agatgccaac atggcgcttg acctcctacg
181 ccggtcgcaa acaccatctc caagtcggca aaccaacaat gacagtgtcc ctaaggcaca
241 aagggaccgt cccccacgaa ctgcttcaga agttaagagg gcactgggat gggatgctga
301 accagaacat caggagagta cggctagggc atggtgtgac ctctcaaaag aggagaagga
361 agaaataatg cgcaacaacg agaagctctt tgatgctgga ggtgtcactc catcagacct
421 gcctagcaca tttgagaggg ctgccccaag tagtgccact gacatgcaac aaccagtgtc
481 atggtcttct agtgatgggg tcaatcttgg catcaataaa ttgaccactg tccgtggccc
541 acattggaac atgtgtcccc taccaccgct ggatgcacgt aacagtggtc ctgccaagga
601 accccttata ggggacatga ttgagttcta cgaaggtcat atatttcact atgccattta
661 tattggacaa ggtaaaacca ttggagtcca ctcaccacag gccgctttct ccatacccag
721 gataaccatc cacccgttag tggcctggtg gcgtgtgtgt tacgtcccca acaaccaaca
781 acgcctcacc tacgaacaac ttaaggaatt ggaaaatgaa ccatggccct atgccgcaat
841 caccaacaac tgttacgagt tttgttgtaa ggtgatggcg cttgatgaca cctggctcca
901 aagaaaacta gtcactagtg gaaagttcaa ccatcccaca caggactggt cacaggacac
961 cccagatttc catcaggact cgaagttaga gatggtgaga gacgccgttt tgtcagccat
1021 caacggcctt gtgtcacaac cttttaagaa tatcctttca aaaattaaac cactaaatgt
1081 gctcagcctc ttatcaaatt gtgactggac ctttatgggc gttgtggaac tagttgtact
1141 cctagcagag ctgttcgacg tgttctggac cccaccggac atttcgagct ttattgcatc
1201 tttattgcct gatttccacc tacaaggccc agaagaccta gccagagacc tagtccctat
1261 tatattaggt ggcataggtc tggcaattgg tttcacaaga gacaaaataa caaaagtgat
1321 gaagagtgcc gttgatgggc tacggtcagc aacacagctt gggcaatatg ggttagagat
1381 attctcaatc atcaagaaat acttctttgg aggggaccaa acagaaaaga ccctgcgggg
1441 catcgaagat gcagtgatag acatggaagt attgtccagc actaatgtga cacaactagt
1501 caaagataaa aagttagcca aagcttacat gaatgtgctg gactgtgagg aagaaaaagc
1561 gaggaagctc tcagtccgta gtgctgaccc acacatagta acctctgtca acaacctgat
1621 atcacgcatt tctatggcaa gatcagctct agctaaagcc caagctgaaa tgacatcccg
1681 cccacgacca gtggtcataa tgatgtgtgg tcctcctggc atcggtaaga ccaaggctgc
1741 cgaacatcta gccggccgac tagccgctga aatcaggcct ggaggtaagg ttggccttgt
1801 accccgggaa tctatagacc actgggatgg atatcatggt gaggatgtct tgctctggga
1861 tgactatggc atgtcaaaaa taacagagga ttgcaacaag ttgcaggcta tagccgacac
1921 tgcaccacta tcgctcaatt gtgacaggat agaaaataaa ggtatgcaat tctcttctga
1981 tgcaataatc ataacaacca atgcccctgg cccagcccca gtggactttg tcaatctagg
2041 ccccgtgtgc agacgtgtgg actttttagt ttactgctcc gcacccgaga ttgaacagac
2101 gcggagggcc cacccaggtg acaccaatgc catcaaggat ttgtttaaga aggatttctc
2161 acacctaaaa atggaactag ccccacaggg cggttttgac aatcagggca acacaccttt
2221 tggaaagggt gtcatgaaaa ccacaaccct taacagactg ctgatacagg ccacagcgct
2281 agccatggaa cggcaagatg aattccaact tcagggggct gtctacaact tcgacgagga
2341 cagagtggcc gccttcacta gtctggctcg cgctaatggc ctgggattca taagtatggc
2401 aacattgggc aagaaactaa ggaatgttaa gaccatggag ggcttgcgca acgcactact
2461 gggctacaag attggagagt gtgatataat ctggaacact agagtgtact cagttaagag
2521 tgacgggagc aatgtcacaa ttaaagaaaa acaagcacca tcctcatccc aacaccaagc
2581 tatttctaca gccaccttag cactgtccag actacgggct gccagggctc tcgcatacgc
2641 ctcttgtctg caaagtgctg tgttgtcaat acttcaggtg gccggctctg ctgtagtggt
2701 gagtagggcc gtaaaacgca tgtttggcac acgcaccgaa cagcccattc tggaaggcaa
2761 gcacaaagaa cacaactgca gagtgcaccg tgcagcggct gccggccgtg gtcctattgg
2821 ccatgatgga atcattgaac gttatggcct gtgtgagagt gagcaggaag gtgaagatga
2881 tcagactgta gagctgccta ccgctgacaa agaaggcaaa aacaaaggca aaaccaaaaa
2941 gggccgtggg cggaagtcca atttcaatgc attctctagg cgtgggctca gtgatgaaga
3001 gtatgaggag tacaagaaag taagagaaga gaagggtggc aactacagca tacaagaata
3061 ccttgaggac cgccagcggt acgaagaaga actcgctgag gtgcaagctg gtggagacgg
3121 tgggatcggt gaaactgaag cagaaatccg ccatcgggtc ttctacaaat caaaatctgg
3181 catgagaaaa caacggcaag aggaacgccg ccagttgggc ctcgtgagcg gtactgaaat
3241 ccgcaaacgt aagcccatag attggacccc ccccaaaaat gactggtcag aggacactag
3301 agctgtcaat tatgatgaac acattagctt tgaagcccct ccctcaattt ggagcagagt
3361 ggttaaattt ggcagtggct ggggtttttg ggtgagctcg acagtgttca tcaccacaac
3421 ccatgttata ccacctggtg ctaaggaaat ctttggtgag aacctcaaca acattgccat
3481 ccacagggtt ggtgagttca cccagttccg tttctcaaag aaaatgaggc ctgacctctc
3541 tggtatggtc ctggaagagg gttgccctga aggcacagtg tgcaccatac tgataaaaag
3601 agactctgga gagctgctac cactggctgt gcgcatggga gcagtggcct caatgaagat
3661 tcagggaaaa ctcatgcatg gacagtcagg gatgttgctc actggtgcta atgctaaggg
3721 catggacctt gggaccatac ctggggactg tggagcacct tacgtccaca agagagggaa
3781 tgactgggtg gtctgtgggg tacatgcagc agccacaaaa tcaggcaaca ccgtggtgtg
3841 cgccatacaa ggcggtgagg gtgaagccac gttggagggt ggcggacaaa ataaaggtca
3901 ctatgcagga cacccaatac taagatatgg aaatggccct tcattatcaa ccaaaacaaa
3961 attctggaaa tcaaaccctc agcctctacc ccccggcaca tatgaaccag cctaccttgg
4021 tggcagggac cccagagtcg aaggtggtcc atctttgcag caagtgttgc gagaccagct
4081 aaagccattc gctgaacctc gtggcaggct gcccgaggca ggattgctgg aagctgcggt
4141 tgagaccgtc accaatgcaa tcgaacaggt catggataca ccagtggcat ggagttacag
4201 cgatgcctgc atgtccctag acaaaacaac cagttctggt tacccccacc acaagagaaa
4261 gaatgatgat tggaatggaa actcgtttgt gagagaactg ggagatcaag cagcacacgc
4321 taatagcatg tatgaacttg gtaagtccat gaagccagtg tacacagcag cactcaagga
4381 tgaactcgtc aagccagaca aggtgtacaa caaaattaag aaaaggctac tctggggagc
4441 agacctcggc accgtcgtcc gtgccgccag agcttttgga ccattttgtg aggccataaa
4501 accccatgtg atcaaattac ccattaaagt gggcatgaat gccatagagg atggtccttt
4561 aatttatgca gaacactcca agtataagta tcattttgat gctgattaca cagcatggga
4621 ttcaacacaa aacagagaga tcatgatgga gtcctttaac atcatgtgta aactcactgc
4681 taacccttcc ctggccgcag tagtggcgca ggatctgctt tccccttctg aaatggatgt
4741 cggtgattat gtgatcagtg tcaaagatgg cctaccatct ggctttccat gcacctcaca
4801 agtgaacagc atcaaccatt ggatctacac gctgtgtgct ctatcagaag tcactggctt
4861 agcccctgat gtaatacaat cacaatctta tttctcattt tatggtgatg atgagatagt
4921 ctcaacagat attgaatttg acccaaacag gttaacacaa gtgctaagag agtatggctt
4981 aaaacccaca agacctgata agactgatgg cccaatcatt gtgagacagc aagtcgatgg
5041 cttggttttc ctccggcgca ccatctcgaa agatgccatt ggataccagg gacgcctcga
5101 ccgaaattcc attgagagac agctctggtg gactcgtggg cccaaccatg atgatccatt
5161 tgaaacctta gtcccacaca cacagagaaa ggtccagctg atatccctac taggtgaagc
5221 tgcactccat ggtgagaaat tctacagaaa gatagccagt agggtgatcc aggaagtcaa
5281 agaggggggg ttggaagtct acatccctgg gtggcaggcc atgttccgct ggatgcgatt
5341 ccatgatttg agcttgtgga caggagaccg cgatctcttg cccgattatg taaatgatga
5401 tggcgtctaa ggacgcccca acaaacatgg atggcaccag tggtgccggt cagctggtac
5461 cagaggcaaa tacagctgaa cctatatcaa tggatccagt ggctggagcc gcaacagcgg
5521 tcgctactgc tggacaaatt aatatgattg acccctggat aatgagtaac tttgtgcagg
5581 ccccgcaagg ggaattcact gtctcaccaa ataatacccc tggagatatt ttgtttgatt
5641 tgcaattagg accccaatta aatcccttcc tagcccattt agcccagatg tataatggtt
5701 gggtaggcaa tatgcgtgtg aaggtgatgc ttgctggcaa cgcttttacc gcggggaaaa
5761 taataattag ctgcataccc ccaggcttca cttcccaaaa catttccatt gctcaaatga
5821 caatgttccc tcacgttatt gctgacgtga gggtcctaga acctatagaa ataccccttg
5881 aggatgtgag gaatgtgctg tttcacacca atgacaataa accaacaatg aggctcgtat
5941 gcatgttgta cacccccctg cgagccaatg gcagttcttc tggtacggat ccttttgtca
6001 tagctggcag ggtcctcacc tgtccagatt caacttttag cttccttttc ttagtacccc
6061 ccaatgttga gcaaaagact aggcctttta gtgtccccaa catacctttg aatacactgt
6121 caaattcaag agtaccatca ttgatcaggt ctatgactgt ctctagagat cagaatcaag
6181 taattcagtt ccaaaatggt agggttacat tggatggtca actgcagggt accacaccca
6241 cgtcagtgag ccaattgtgt aaaattagag gcaccaatta tcatgcacaa gggggtagtg
6301 ggataaattt gacagagctg aatggtgaac cttaccatgc ctttgagagt cccgctccaa
6361 tagggtttcc agatcttggc aattgtgatt ggcatctcac tgcaaccccc acgcaggctt
6421 tcaacgacgg atcgaaggtc gtgcacatgt cagtctccca aggcgcagcc tttgccccac
6481 acttaggcac catacattac accaccaatg acactgatta taaccccccc accagcataa
6541 tttgcacact agattggctg tctcaaactg ctggtcagaa caatgtcgac ccctggcaga
6601 taccaagtta tggatctact ttaaccgagg ctgcccagtt ggcacctcct atttaccccc
6661 ctgggtttgg tgaaacattg gttttctttc tatcagattt ccctatttcc aatggtaaga
6721 atggacttag tgtgccttgt acccttccac aagaatttgt cacccacttt gtgaatgagc
6781 aggccccaat tagaggagag gccgccctct tgcattatgt ggatcctgat actcatcgta
6841 atcttggtga gttcaaattg tacccagaag gttttatgac ttgtgttcct aatggtagtg
6901 gtggtggtcc tcaaacttta cctattaacg gagtttttgt ctttgtttct tgggtctctc
6961 gcttttatca attgaagcct gtgggaacgg ccggcgcggc tcgtaggctt ggaatcagga
7021 gatcataatg gcccaggcta tgttgggagc aattgcggcc acagccgctg gcagcgcagt
7081 tggagcaggc attcaggctg gtactgaagc tgctttacaa catcagcgct ttcaacaaga
7141 tttgacccta cagagcaata catttaaaca tgataaggaa atgctggcta tgcaggtgga
7201 ggcttctact tctttattac aaaatagctt gaatactcgc tacaacttgt tgacccaggc
7261 aggtttgact tctgcagacg ccgctagagc agtggcggga gcccccgtca ctcgtgtggt
7321 ggattggaat ggcactcgaa tcgccgctcc actgtcaact gccaccactc tccgctctgg
7381 aggtttcatg tccataccag tcatgtacag aggtgcaaaa acagaacaac agaaattgac
7441 aggcttttcc aatcccaatt acgagactgg ctcatctgtg tcgcgcacgt cgcaatgggt
7501 ttcttcacaa aattccatgc ggtctagcgt ggcaccattc cacccaaatg cactcaggac
7561 aacgtgggtc acaccgcctg gttcatcttc tacttctact atttcttcag cttcatctat
7621 acctagattc tttaatactg aaaggttacc cttgttcgca aacaataaga ggtgattttt
7681 gtaatatgaa aatgtgggca tcatattcaa ttggataaat tttaattggt tttattattt
7741 aattggttta attggataaa ttttaattgg tttta
//