Typing tool
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Typing tool
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Complete norovirus genomes
| LC769686 | GI.3 | |
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| GI.P13 |
ORF1: 1..5392
ORF2: 5376..7010
ORF3: 7010..7657
LOCUS LC769686 7784 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GI Hu/IN/2019/GI.3[P13]/NICED-BCH-10876, nearly complete
genome.
ACCESSION LC769686
VERSION LC769686.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7784)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7784
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Norovirus
GI/Hu/IN/2019/GI.3[P13]/NICED-BCH-10876"
/isolate="Hu/IN/2019/GI.3[P13]/NICED-BCH-10876"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="India: South 24 Parganas"
/collection_date="2019-04-01"
/note="genotype: GI.3[P13]"
gene <1..5392
/gene="POL"
CDS <1..5392
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74102.1"
/translation="DAIAVADVSNNDANTNNENIGSRLMAKIRGRIGPQRGETTTKIK
DANMALDLLRRSQTPSPSRQANNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQESTA
RAWCDLSKEEKEEIMRNNEKLFDAGGVTPSDLPSTFERAAPSSVTDMQQPVSWSSSDG
VNLGINKLTTVRGPHWNMCPLPPLDARNSGPAKEPLIGDMIEFYEGHIFHYAIYIGQG
KTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNNQQRLTYEQLKELENEPWPYAAITN
NCYEFCCKVMALDDTWLQRKLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAI
NGLVSQPFKNILSKIKPLNVLSLLSNCDWTFMGVVELVVLLAELFDVFWTPPDISSFI
ASLLPDFHLQGPEDLARDLVPIILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLGQY
GLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYMNVLD
SEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMCGPP
GIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKITED
CNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDF
LVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDNQGNTPFGKGVMK
TTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTSLARANGLGFISMATLGK
KLRNVKTMEGLRNALLGYKIGECDIVWNTRVYSVRSDGSNVTIKEKQAPSSSQHQAIS
TATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQPILEGK
HKEHNCRVHRAAAAGRGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGKNKGKT
KKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQA
GGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTPPKND
WSEDTRAVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFG
ENLNNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTILIKRDSGELLPLAV
RMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVH
AAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGSGPSLSTKTKFWKSNP
QPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVT
NAIEQAMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGNSFVRELGDQAAHANS
MYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVVRAARAFGPFCEAIK
PHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNIMCKL
TANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSE
VTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDPNRLTQVLREYGLKPTRPDKTDGPIIV
RQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQRKVQ
LISLLGEAALHGEKFYRKIASRVIQEVKEGGLEVYIPGWQAMFRWMRFHDLSLWTGDR
DLLPDYVNDDGV"
gene 5376..7010
/gene="VP1"
CDS 5376..7010
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74103.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMDPVAGAATAVA
TAGQINMIDPWIMSNFVQAPQGEFTVSPNNTPGDILFDLQLGPQLNPFLAHLAQMYNG
WVGNMRVKVMLAGNAFTAGKIIISCIPPGFTSQNISIAQMTMFPHVIADVRVLEPIEI
PLEDVRNVLFHTNDNKPTMRLVCMLYTPLRANGSSSGTDPFVIAGRVLTCPDSTFSFL
FLVPPNVEQKTRPFSVPNIPLNTLSNSRVPSLIRSMTVSRDQNQVIQFQNGRVTLDGQ
LQGTTPTSVSQLCKIRGTNYHAQGGSGINLTELNGEPYHAFESPAPIGFPDLGNCDWH
LTATPTQAFSDGSKVVHMSVSQGAAFAPHLGTIHYTTNDTDYNPPTSIICTLDWLSQT
VGQNNVDPWQIPSYGSTLTEAAQLAPPIYPPGFGETLVFFLSDFPISNGKNGLSVPCT
LPQEFVTHFVNEQAPIRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNGSGGGPQT
LPINGVFVFVSWVSRFYQLKPVGTAGAARRLGIRRS"
gene 7010..7657
/gene="VP2"
CDS 7010..7657
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74104.1"
/translation="MAQAMLGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLAMQVEASTSLLQNSLNTRYNLLTQAGLTSADAARAVAGAPVTRVVDWNG
TRIAAPLSTATTLRSGGFMSIPVMYRGAKIEQQKLTGFPNPNYETGSSVSRTSQWVSS
QNSMRSSVAPFHPNALRTTWVTPPGSSSTSTISSASSIPRFFNTERLPLFANNKR"
ORIGIN
1 cgacgctatt gccgttgctg atgtcagcaa taacgatgct aacaccaaca atgaaaatat
61 tggatctcgc ctcatggcga agatccgtgg gcgtataggc ccacaacgtg gtgaaacaac
121 cacaaagatc aaggatgcca acatggcgct tgacctccta cgccggtcgc aaacaccatc
181 tccaagtcgg caagccaaca atgacagtgc ccctaaggca caaagggacc gtcccccacg
241 aactgcttca gaagtaaaga gggcactggg atgggatgct gaaccagaac atcaggagag
301 tacggctagg gcatggtgtg acctctcaaa agaggagaag gaagaaataa tgcgcaacaa
361 cgagaagctc tttgatgctg gaggtgtcac tccatcagac ttgcctagca catttgagag
421 ggctgcccca agtagtgtca ctgacatgca acaaccagtg tcatggtctt ctagtgatgg
481 ggtcaatctt ggcatcaata aattgaccac tgtccgtggc ccacattgga acatgtgtcc
541 cctaccaccg ctggatgcac gtaacagtgg tcccgccaag gaacccctta taggggacat
601 gattgagttc tacgaaggtc acatatttca ctatgccatt tacattggac aaggtaaaac
661 cattggagtc cactcaccac aggccgcttt ctccatacct aggataacca tccacccgtt
721 agtggcctgg tggcgtgtgt gttacgtccc caacaaccaa caacgcctca cctacgaaca
781 acttaaggaa ttggaaaatg aaccatggcc ctatgccgca atcaccaaca actgttatga
841 gttttgttgt aaggtgatgg cgcttgatga cacctggctc caaagaaaac tggtcactag
901 tggaaagttc aaccatccca cacaggactg gtcacaggac accccagatt tccatcagga
961 ctcgaagtta gagatggtga gagacgccgt tttgtcagcc atcaacggcc ttgtgtcaca
1021 accttttaag aatatccttt caaaaatcaa accactaaac gtgctcagcc tcttatcgaa
1081 ttgtgactgg acctttatgg gcgttgtgga actagttgta ctcctagcag agctgttcga
1141 cgtgttctgg accccaccgg acatttcgag ctttattgca tctttattgc ctgatttcca
1201 cctacaaggc ccagaagacc tagccagaga cctagtccct attatattag gtggcatagg
1261 tctggcaatt ggtttcacaa gagacaaaat aacaaaagtg atgaagagtg ccgttgatgg
1321 gctacggtca gcaacacagc ttgggcaata tgggttagag atattctcaa tcatcaagaa
1381 atacttcttt ggaggggacc aaacagaaaa gaccctgcgg ggcatcgaag atgcagtgat
1441 agacatggaa gtattgtcca gcactaatgt gacacaatta gtcaaagata aaaagttagc
1501 caaagcttac atgaatgtgc tggacagtga ggaagaaaaa gcgaggaagc tctcagtccg
1561 tagtgctgac ccacacatag taacctctgt caacaacctg atatcacgca tttctatggc
1621 aagatcagct ctagctaaag cccaagctga aatgacatcc cgcccacgac cagtggtcat
1681 aatgatgtgt ggtcctcctg gcatcggtaa gaccaaggct gccgaacatc tagccggccg
1741 actagccgct gaaatcaggc ctggaggtaa ggttggcctt gtaccccggg aatctataga
1801 ccactgggat ggatatcatg gtgaggatgt tttgctctgg gatgactatg gcatgtcaaa
1861 aataacagag gattgtaaca agttgcaggc tatagccgac actgcaccac tgtcgctcaa
1921 ttgtgacagg atagaaaata aaggtatgca attctcttct gatgcaataa tcataacaac
1981 caatgcccct ggcccagccc cagtggactt tgtcaaccta ggccccgtgt gcagacgtgt
2041 ggacttttta gtttactgct ccgcacccga gattgaacag acgcggaggg ctcacccagg
2101 tgacaccaat gccatcaagg atttgtttaa gaaggatttc tcacacctaa aaatggaact
2161 agccccacag ggcggttttg acaatcaggg caacacacct tttggaaagg gtgtcatgaa
2221 aaccacaacc cttaacagac tgctgataca ggccacagcg ctagccatgg aacggcaaga
2281 tgaattccaa cttcaggggg ctgtctacaa cttcgacgag gacagagtgg ccgccttcac
2341 tagtctggct cgcgctaatg gcctgggatt cataagcatg gcaacattgg gcaagaaact
2401 aaggaatgtt aaaaccatgg aaggcttgcg caacgcacta ctgggctaca agattggaga
2461 gtgtgatata gtctggaaca ctagagtgta ctcagtcagg agtgacggga gcaatgtcac
2521 aattaaagaa aaacaagcac catcctcatc ccaacaccaa gctatttcta cagccacctt
2581 agcactgtcc agactacggg ctgccagggc tctcgcatac gcctcttgtc tgcaaagtgc
2641 agtgttgtca atacttcagg tggccggctc tgctgtagtg gtgagtaggg ccgtaaaacg
2701 catgtttggc acacgcaccg aacagcccat tctggaaggc aagcacaaag aacacaactg
2761 cagagtgcac cgtgcagcgg ctgccggccg tggtcctatt ggccatgatg ggatcattga
2821 acgttatggc ctgtgtgaga gtgagcagga aggtgaagat gatcagactg tagagctgcc
2881 tactgctgac aaagaaggca aaaacaaagg caaaaccaaa aagggccgtg gacggaagtc
2941 caatttcaat gcattctcta ggcgtgggct cagtgatgaa gagtatgagg agtacaagaa
3001 agtaagagaa gagaagggtg gcaactacag catacaagaa taccttgagg accgccagcg
3061 gtacgaagaa gaactcgctg aggtgcaagc tggtggagac ggtgggatcg gtgaaactga
3121 agcagaaatc cgccatcggg tcttctacaa atcaaaatct ggcatgagga aacaacggca
3181 agaggaacgc cgccagttgg gcctcgtgag cggtactgaa atccgcaaac gtaagcccat
3241 agattggacc ccccccaaaa atgactggtc agaggacact agagctgtca attatgatga
3301 acacattagc tttgaagccc ctccctcaat ttggagcaga gtagttaaat ttggcagtgg
3361 ctggggtttt tgggtaagct cgacagtgtt catcaccaca acccatgtta taccacctgg
3421 tgctaaggaa atctttggtg agaacctcaa caacattgcc atccacaggg ttggtgagtt
3481 cacccagttc cgtttctcaa agaaaatgag gcctgacctc tctggtatgg tcctggaaga
3541 gggttgccct gaaggcacag tatgcaccat actgataaaa agagactctg gagagctgct
3601 gccattggct gtacgcatgg gagcagtggc ctcaatgaag attcagggaa aactcatgca
3661 tggacagtca gggatgttgc tcactggtgc taatgctaag ggcatggacc ttgggaccat
3721 acctggggac tgtggagcac cttacgtcca caagagaggg aatgactggg tggtctgtgg
3781 ggtacatgca gcagccacga aatcaggcaa caccgtggtg tgcgccatac aaggcggtga
3841 gggtgaagcc acgttggagg gtggcggaca aaataaaggt cactatgcag gacaccctat
3901 actaagatat ggaagtggcc cttcattatc aaccaaaaca aaattctgga aatcaaaccc
3961 tcagcctcta ccccccggca catatgaacc agcctacctt ggtggcaggg accccagagt
4021 cgaaggtggt ccatctttgc agcaagtgtt gcgagaccag ctaaagccat tcgctgaacc
4081 tcgtggcagg ctgcccgagg caggattgct ggaagctgcg gttgagaccg tcaccaatgc
4141 aatcgaacag gccatggata caccagtggc atggagttac agcgatgcct gcatgtccct
4201 agacaaaaca accagttctg gttaccccca ccacaagaga aagaatgatg attggaatgg
4261 aaactcgttt gtgagagaac tgggagatca agcagcacac gctaatagca tgtatgaact
4321 tggtaagtcc atgaagccag tgtacacagc agcactcaag gatgaactcg tcaagccaga
4381 caaggtgtac aacaaaatta agaaaaggct actctggggg gcagacctcg gcaccgtcgt
4441 ccgtgccgcc agagcttttg gaccattttg cgaggccata aaaccccatg tgatcaaatt
4501 acccatcaaa gtgggcatga atgccataga ggatggtcct ttaatttatg cagaacactc
4561 caagtataag tatcattttg atgctgatta cacagcatgg gattcaacac aaaacagaga
4621 gataatgatg gagtccttta atatcatgtg taaactcact gctaaccctt ccttggccgc
4681 agtagtggcg caggacctgc tttccccttc tgaaatggat gtcggtgatt atgtgatcag
4741 tgtcaaagat ggcctaccat ctggcttccc atgcacctca caagtgaaca gcatcaacca
4801 ttggatctac acgctgtgtg ctctatcaga agtcactggc ttagcccctg atgtaataca
4861 atcacaatct tatttctcat tttatggtga tgacgagata gtctcaacag atattgagtt
4921 tgacccaaac aggttaacac aagtgctaag agagtatggc ttaaaaccca caagacctga
4981 caagactgat ggcccaatca ttgtaagaca gcaagttgat ggcttggttt tcctccggcg
5041 caccatttcg aaagatgcca ttggatacca gggacgcctc gaccgaaatt ccattgagag
5101 acagctctgg tggactcgtg ggcccaacca tgatgaccca tttgaaacct tagtcccaca
5161 cacacagaga aaggtccagc tgatatccct actaggtgaa gctgcactcc atggtgagaa
5221 attctacaga aagatagcca gtagggtgat ccaggaagtc aaagaggggg ggttggaagt
5281 ctacatccct gggtggcagg ccatgttccg ctggatgcga ttccatgatt tgagcttgtg
5341 gacaggagac cgcgatctct tgcccgatta tgtaaatgat gatggcgtct aaggacgccc
5401 caacaaacat ggatggcacc agtggtgccg gtcagctggt accagaggca aatacagctg
5461 aacctatatc aatggatcca gtggctggag ccgcaacagc ggtcgctact gctggacaaa
5521 ttaatatgat tgacccctgg ataatgagta attttgtgca ggccccgcaa ggggaattca
5581 ctgtctcacc aaataatacc cctggagata ttttgtttga tttgcaatta ggaccccaat
5641 taaatccctt cctagcccat ttagcccaga tgtataatgg ttgggtaggc aatatgcgtg
5701 tgaaggtgat gcttgctggc aacgctttta ccgcggggaa aataataatt agctgcatac
5761 ccccaggctt tacttcccaa aacatttcca ttgctcaaat gacaatgttc cctcacgtta
5821 ttgctgacgt gagggtccta gaacctatag agatacccct tgaggatgtg aggaatgtgc
5881 tgtttcacac caatgacaat aaaccaacaa tgaggctcgt atgcatgttg tacacccccc
5941 tgcgagccaa tggcagttct tctggtacgg atccttttgt catagctggc agggtcctca
6001 cctgcccaga ttcaactttt agcttccttt tcttagtacc ccccaatgtt gagcaaaaga
6061 ctaggccttt tagtgtcccc aacatacctt tgaatacatt gtcaaactca agggtgccat
6121 cattgatcag gtctatgact gtctctagag atcagaatca agtaattcag ttccaaaatg
6181 gtagggttac attggatggt caactgcagg gtaccacacc cacgtcagtg agccaattgt
6241 gtaaaattag gggcaccaat tatcatgcac aagggggtag tgggataaat ttgacagagc
6301 tgaatggtga accttaccat gcctttgaga gtcccgctcc aatagggttt ccagatcttg
6361 gcaattgtga ttggcatctc actgcgaccc ccacgcaggc tttcagcgac ggatcgaagg
6421 tcgtgcacat gtcagtctcc caaggcgcag cctttgcccc acacttaggc accatacatt
6481 acaccaccaa tgacactgat tataaccccc ccaccagcat aatttgcaca ctagattggc
6541 tgtctcaaac tgttggtcag aacaatgtcg acccctggca gataccaagt tatggatcta
6601 ctttaaccga ggctgcccag ttggcgcctc ctatttaccc tcctgggttt ggtgaaacat
6661 tggttttctt tctatcagat ttccctattt ccaatggtaa gaatggactt agtgtgcctt
6721 gtacccttcc acaagaattt gtcacccact ttgtgaatga gcaggcccca attagaggag
6781 aggctgccct cttgcattat gtggatcctg acactcatcg taatcttggt gagttcaaat
6841 tgtacccaga aggttttatg acttgtgttc ctaatggtag tggtggtggt cctcaaactt
6901 tacctattaa tggagttttt gtctttgttt cttgggtctc tcgcttttat cagttgaagc
6961 ctgtgggaac ggccggcgcg gctcgtaggc ttggaatcag gagatcataa tggcccaggc
7021 tatgttggga gcaattgcgg ccacagccgc tggtagcgca gttggagcag gcattcaggc
7081 tggtactgaa gctgctttac aacatcagcg ctttcaacaa gatttgaccc tacagagcaa
7141 tacatttaaa catgataagg aaatgctggc tatgcaggtg gaggcttcta cttctttatt
7201 acaaaatagc ttgaatactc gctataactt gttgacccag gcaggtttga cttctgcaga
7261 cgccgctaga gcagtggcgg gagcccccgt cactcgtgtg gtggactgga atggcactcg
7321 aatcgccgct ccactgtcaa ctgccaccac tctccgctct ggaggtttca tgtccatacc
7381 agtcatgtac agaggtgcaa aaatagaaca acagaaattg acaggctttc ccaaccccaa
7441 ttacgagact ggctcatctg tgtcgcgcac gtcgcaatgg gtttcttcac aaaattccat
7501 gcggtctagc gtggcaccat tccatccaaa tgcactcagg acaacgtggg tcacaccgcc
7561 tggttcatct tctacttcta ctatttcttc agcttcatct atacctagat tctttaatac
7621 tgaaaggtta cccttgttcg caaacaataa gaggtgattt ttgtaatatg aaaatgtggg
7681 catcatattc aattggataa attttaattg gttttattat ttaattggtt taattagata
7741 aattttaatt ggttttatta tttaattggc ttttgatgtt aaaa
//