Typing tool
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Typing tool
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Complete norovirus genomes
| LC769684 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5090
ORF2: 5071..6693
ORF3: 6693..7499
LOCUS LC769684 7538 bp RNA linear VRL 11-JUL-2025
DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10861, nearly
complete genome.
ACCESSION LC769684
VERSION LC769684.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Lo,M., Doan,Y.H., Mitra,S., Saha,R., Miyoshi,S.I., Kitahara,K.,
Dutta,S., Oka,T. and Chawla-Sarkar,M.
TITLE Comprehensive full genome analysis of norovirus strains from
eastern India, 2017-2021
JOURNAL Gut Pathog 16 (1), 3 (2024)
PUBMED 38238807
REMARK DOI:10.1186/s13099-023-00594-5
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7538)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7538
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.4
Sydney[P16]/NICED-BCH-10861"
/isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10861"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India: Kolkata"
/collection_date="2019-03-28"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5090
/gene="POL"
CDS <1..5090
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74096.1"
/translation="SNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA
PRDEPQKPPRPPTPELVKRIPPPPPNGEEEGEPVIRYEVKSGISGLPELTTVPQPDVA
NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
RVELTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEE
LKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHA
RIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKS
EDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGET
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMI
RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGL
KPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHED
PNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5071..6693
/gene="VP1"
CDS 5071..6693
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74097.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEVNQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6693..7499
/gene="VP2"
CDS 6693..7499
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74098.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDAVPARGPSTKPS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cgtccaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag gaaaaatctt
61 caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc ggggctaggc
121 ccaaacagcc tgccccgaga gacgaaccac aaaagccccc aagaccacca actcccgagt
181 tggtcaagag gataccccct cctccaccta atggcgaaga agaaggagaa ccagtcatta
241 ggtatgaggt aaagagtggg atctctggcc tgcccgagct cacaacagtc ccccaaccgg
301 acgtggccaa cacagcattt agtgttccac cactgagctt gagagaaaac agggaggcca
361 aggagccgct aacaggggca atattagaga tgtgggacgg agagatatac cactatggcc
421 tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc ataagcatgg
481 cgagagtgga gctgacgccg ctgtcattgt actggcgtgt ggtgtacact ccccaatacc
541 tcatctcccc tgaaactctc aagaggctca acggagaggc gtttccttac accgctttcg
601 acaacaactg ctatgccttt tgctgctggg tgttagacct caatgactca tggcttagca
661 ggaggatggt gcaaagaaca acgggcttct tcaggcctta ccaagagtgg aacagaaaac
721 ccttgcctac catggatgac tccaaaataa agaaggtagc aaatatattc ctatgttcat
781 tgtccacatt attcaccaga cccataaaag acctcatagg gaaaattaaa ccattaaata
841 tattgaacat cctggcaacg tgtgactgga cgtttgctgg aatagtggag tctctgatat
901 tgcttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct atgatcgctc
961 ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa ctcgtacctg
1021 tggtaatggg agggattggc ttggtgttgg gattcaccaa agagaaaatt ggcaaaatgt
1081 tgtcctcagc agcatcaaca ctcagggctt gtaaagatct tggtgcctat ggcttagaga
1141 tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat gagctagcca
1201 tggtgagggc catagaggat gccgtactag atcttgaggc aatagaaaat aaccacatga
1261 caaccctgtt gaaagacaaa gacagcttag caacatacat gaaaacactg gacatggagg
1321 aggagaaagc cagaagattg tccacaaaat ctgcatcccc tgacatagtt gggacaatca
1381 acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc aaggaagaac
1441 tgtctagcag gataaggcca gtggttgtta tgatatctgg caaaccagga ataggcaaaa
1501 ctcatctggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg gatcagagag
1561 tcggactcat accaagaaac ggtgtggacc attgggatgc atacaaaggt gagagagtcg
1621 tgttgtggga cgactatggc atgagtaacc ccattcatga tgctcttcgc atacaagaat
1681 tggctgatac gtgccccctt accttaaatt gtgacagaat tgaaaataag ggaaaagttt
1741 ttgacagtga agtcataata attacaacaa accttgccaa cccagcccca cttgattatg
1801 tcaactttga ggcctgttcc aggagaattg atttcctggt gtacgctgag gcaccagaag
1861 tagaaaaggc aaaacgggat tttcctggtc agccagatat gtggaaggac gccttcaagc
1921 cggatttttc acacatcaag ctacagcttg cacctcaggg cggctttgac aagaatggca
1981 acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg attgcccgtg
2041 catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtccc acaatcacca
2101 ctttcaattt cgaccggaac agaatcacag cattcagaca attggctgca gaaaacaagt
2161 atggactggt ggataccatg aaagttggca atcaactaaa aggagtgaaa accatggaag
2221 aactcaaaca agcaatcagg aatgtgacca tcaagaggtg ccggatcatc tacggtggat
2281 ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag gtcaagaaca
2341 cctctataca gaccaacaac gagttggccg gggccctgca ccatcttaaa catgcccgaa
2401 tcaggtacta tgtcaaatgt gtgcaagaag cagtctactc catcatacaa attgccggcg
2461 ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc tggtcgaagc
2521 cacaattaga tcaaaatgaa tcagagacca aggaagaggc ccccaagtca gaagatgacg
2581 agttcatcat atcttctaag gatatcaagg aggaaggaaa gaagggcaaa aacaaaactg
2641 gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag gagtatgacg
2701 agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag tatcttcaag
2761 acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa gacttctgtg
2821 aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa caaagaaagg
2881 aagagagggc cacactaggg ctggtaacag gttcagaaat cagaagaaga aaccctgatg
2941 atttcaaacc caaggggaag ctgtgggccg atgacaacag aagtgttgac tacaatgaga
3001 aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt ggttctggct
3061 ggggcttctg ggtatcacca agcctgttca taacatcaac tcatgtgatc cctgcaggca
3121 taacagaagc atttggagtc cccatcaaac aaatccagat ccacaaatca ggtgaatttt
3181 gccgattcag attcccaaaa ccaattagac cagatgtgac aggaatgatc ttggaagaag
3241 gtgcgcctga aggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga gagctcatgc
3301 ctcttgcagc cagaatggga acacacgcaa ccatgaagat tcaaggccgc atggttggcg
3361 gacagatggg tatgttgctc actggatcaa atgccaaagg aatggatttg ggaacgactc
3421 ctggtgactg tggctgccct tacatctata aaaggggcaa tgactatata gtcattgggg
3481 tgcacactgc agcagcccgt ggtggaaaca ccgtcatctg tgccacacag ggaagtgagg
3541 gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca cccattctag
3601 gccctggggg cgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca tcgaacacgc
3661 cccttccacc agggacatat gagcctgcct acctcggtgg ccgtgacccg cgtgttaggg
3721 gtgggccctc cttacagcag gtaatgagag accagttgaa gccattcact gaacccaggg
3781 gcaaacctcc aagaccaagt gttttggaag cagccaaaca aactattatc aatgtccttg
3841 aacaaaccct ggatcctcca caaaaatgga catacgcaca ggcgtgtgcc tcacttgaca
3901 aaaccacctc cagcgggcat ccccatcacg tccgaaagaa tgaattctgg aatggtgaga
3961 ccttcactgg taaattggca gaccaagcat caaaagcaaa cctaatgttt gaggaaggga
4021 aacacatgac accagtgtac acagcagcac tcaaggatga gctagttaag actgagaaaa
4081 tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc atgatccggt
4141 gcgctaggtc atttggtggg ctcatggacg agatgaaggc acactgcata tcactcccag
4201 tgcgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa cattccagat
4261 acaaatacca ctatgatgca gactactctc gttgggattc aacacaacag agggcagtat
4321 tagcagcagc cttggaaatc atggtcagat tctctgcaga accacaattg gcacaaatag
4381 tcgctgagga tctactggcc cctagtgtag tagatgtagg agactttaaa atcacaataa
4441 atgaagggct tccatctggc gtgccatgca cttctcaatg gaactccatc gcacactggc
4501 tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt atacaagcaa
4561 attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata aaattggacc
4621 ctgaacagtt gaccgctaag ttgaaggagt acggcctgaa accaacccgc ccagacaaga
4681 ccgagggacc cctgatcatc agtgaagatt tgaacggact cactttcctc cgaaggacgg
4741 tgactcgtga cccagctggc tggtttggaa aactggacca aagttcaatt ttgaggcaga
4801 tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata ccccattctc
4861 aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga ccctctttct
4921 acagtagaat cagtaaattg gtcataactg aacttaaaga aggtgggatg gacttttacg
4981 tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc acgtgggagg
5041 gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgagtga cgccaaccca
5101 tctgatgggt ccgcagccaa cctcgtacca gaggtcaaca atgaggttat ggctttggag
5161 cccgttgttg gtgccgccat cgcggcacct gtagcgggcc aacaaaatgt aattgacccc
5221 tggattagaa ataattttgt acaagcccct ggtggggagt ttacagtatc ccctagaaat
5281 gctccaggtg aaatactatg gagcgcgccc ctaggccctg acctaaatcc ctacctatcc
5341 catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt aattctcgcg
5401 gggaacgcgt tcaccgctgg gaagattata tttgcagcag tcccaccaaa ttttccaact
5461 gaaggcttaa gccctagcca ggtcactatg ttcccccata taatagtaga tgttagacaa
5521 ttggaacctg tgctgatccc cttacccgat gttaggaata atttctatca ttacaatcag
5581 tcaaatgact ccactattaa gttgatagca atgttgtaca caccacttag ggctaataat
5641 gctggggatg atgttttcac agtttcgtgc cgagttctca cgagaccatc ccccgatttt
5701 gatttcatat ttttagtacc acccacagtt gagtcaagaa ctaaaccatt ctctgtccca
5761 gttttaactg ttgaggagat gaccaattca agattcccca tccctttgga aaaattgttc
5821 acaggcccca gcagtgcatt tgttgttcaa ccacaaaacg gcagatgcac aactgatggc
5881 gtgctcctag gcaccaccca actttctcct gtcaacatct gcaccttcag aggggatgtc
5941 acccacatta caggtagtca taactacact atgaatttgg cttctcaaaa ttggaacaac
6001 tacgacccaa cagaagaaat cccagccccc ctaggaactc cagattttgt ggggaagatt
6061 caaggcatgc tcacccaaac cacaaggaca gatggttcaa cacgcggcca caaagctaca
6121 gtgtacactg ggagcgccga ctttgctcca aaactgggta gagttcaatt tgaaactgac
6181 acaaaccatg attttgaagt taatcaaaac acaaaattca ccccagtcgg tgtcatccaa
6241 gatggtagca ccacccaccg aaacgaaccc caacagtggg tgctcccaag ttactcaggc
6301 agaaatactc acaatgtaca tttggccccc gctgtagccc ccacctttcc gggtgagcaa
6361 cttctcttct tcagatctac catgcccgga tgcagcgggt accccaacat ggatttggac
6421 tgtctgctcc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc agcacaatct
6481 gatgtggctc tgttaagatt tgtgaatcca gacacaggta gggttttgtt tgagtgcaag
6541 cttcacaaat caggctatgt tacagtggct cacactggcc aacatgattt ggttatcccc
6601 cccaatggtt actttaggtt tgattcctgg gtcaaccagt tctacacgct tgcccccatg
6661 ggaaatggaa cggggcgtag acgtgcagta taatggctgg agctttcttt gctggattgg
6721 catctgatgt cctcggctct ggacttggtt cccttatcaa tgctggggct ggggccatca
6781 accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc caatttagca
6841 gcaatttgca acaggcttcc tttcaacatg ataaagagat gctccaagca caaattgagg
6901 ccaccaaaaa gctacaacag gaaatgatga gagttaagca ggcaatgctc ctagagggtg
6961 ggttctctga gacagatgca gcccgcgggg caattaacgc ccccatgaca aaggctttgg
7021 actggagcgg gacaaggtac tgggctccag atgctagaat tacaacatac aatgcaggcc
7081 acttttccac ccctcaacca tcgggggcac tgccaggaag agctaatctt agggatgctg
7141 tccctgctcg gggaccctcc accaaacctt ctaactcttc tactgccacc tctgtgtact
7201 caaatcaaac tatttcaacg agacttggtt ctacagcagg ttctggaacc agtgtctcga
7261 gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaatagg aatttgtcac
7321 ctttcatgag gggggcccac aacatatcat ttgtcacccc accatctagt agatcctcta
7381 gtcaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact ggcgctttca
7441 acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca cgggtgtaat
7501 gtgaaaagac aaaactgatt atctttcttt ttcttttc
//