Typing tool
|
Complete norovirus genomes
LC769684 | GII.4 Sydney | ||
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GII.P16 |
ORF1: 1..5090 ORF2: 5071..6693 ORF3: 6693..7499LOCUS LC769684 7538 bp RNA linear VRL 17-OCT-2023 DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10861, nearly complete genome. ACCESSION LC769684 VERSION LC769684.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Doan,Y.H. TITLE Norovirus in India JOURNAL Unpublished REFERENCE 2 (bases 1 to 7538) AUTHORS Doan,Y.H. and Oka,T. TITLE Direct Submission JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of Infectious Diseases, Center for Emergency Preparedness and Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7538 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Norovirus GII/Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10861" /isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10861" /host="Homo sapiens" /db_xref="taxon:122929" /country="India: Kolkata" /collection_date="2019-03-28" /note="genotype: GII.4 Sydney[P16]" gene <1..5090 /gene="POL" CDS <1..5090 /gene="POL" /codon_start=3 /product="nonstructural polyprotein" /protein_id="BEI74096.1" /translation="SNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA PRDEPQKPPRPPTPELVKRIPPPPPNGEEEGEPVIRYEVKSGISGLPELTTVPQPDVA NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA RVELTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL SRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIK PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKS ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK RDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG LLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEE LKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHA RIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKS EDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE IRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI TSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKP PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGET FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMI RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWN SIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGL KPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHED PNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFR WMRFSDLSTWEGDRNLAPNFVNEDGVE" gene 5071..6693 /gene="VP1" CDS 5071..6693 /gene="VP1" /codon_start=1 /product="major capsid protein" /protein_id="BEI74097.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEVNQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" gene 6693..7499 /gene="VP2" CDS 6693..7499 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BEI74098.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDAVPARGPSTKPS NSSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 cgtccaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag gaaaaatctt 61 caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc ggggctaggc 121 ccaaacagcc tgccccgaga gacgaaccac aaaagccccc aagaccacca actcccgagt 181 tggtcaagag gataccccct cctccaccta atggcgaaga agaaggagaa ccagtcatta 241 ggtatgaggt aaagagtggg atctctggcc tgcccgagct cacaacagtc ccccaaccgg 301 acgtggccaa cacagcattt agtgttccac cactgagctt gagagaaaac agggaggcca 361 aggagccgct aacaggggca atattagaga tgtgggacgg agagatatac cactatggcc 421 tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc ataagcatgg 481 cgagagtgga gctgacgccg ctgtcattgt actggcgtgt ggtgtacact ccccaatacc 541 tcatctcccc tgaaactctc aagaggctca acggagaggc gtttccttac accgctttcg 601 acaacaactg ctatgccttt tgctgctggg tgttagacct caatgactca tggcttagca 661 ggaggatggt gcaaagaaca acgggcttct tcaggcctta ccaagagtgg aacagaaaac 721 ccttgcctac catggatgac tccaaaataa agaaggtagc aaatatattc ctatgttcat 781 tgtccacatt attcaccaga cccataaaag acctcatagg gaaaattaaa ccattaaata 841 tattgaacat cctggcaacg tgtgactgga cgtttgctgg aatagtggag tctctgatat 901 tgcttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct atgatcgctc 961 ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa ctcgtacctg 1021 tggtaatggg agggattggc ttggtgttgg gattcaccaa agagaaaatt ggcaaaatgt 1081 tgtcctcagc agcatcaaca ctcagggctt gtaaagatct tggtgcctat ggcttagaga 1141 tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat gagctagcca 1201 tggtgagggc catagaggat gccgtactag atcttgaggc aatagaaaat aaccacatga 1261 caaccctgtt gaaagacaaa gacagcttag caacatacat gaaaacactg gacatggagg 1321 aggagaaagc cagaagattg tccacaaaat ctgcatcccc tgacatagtt gggacaatca 1381 acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc aaggaagaac 1441 tgtctagcag gataaggcca gtggttgtta tgatatctgg caaaccagga ataggcaaaa 1501 ctcatctggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg gatcagagag 1561 tcggactcat accaagaaac ggtgtggacc attgggatgc atacaaaggt gagagagtcg 1621 tgttgtggga cgactatggc atgagtaacc ccattcatga tgctcttcgc atacaagaat 1681 tggctgatac gtgccccctt accttaaatt gtgacagaat tgaaaataag ggaaaagttt 1741 ttgacagtga agtcataata attacaacaa accttgccaa cccagcccca cttgattatg 1801 tcaactttga ggcctgttcc aggagaattg atttcctggt gtacgctgag gcaccagaag 1861 tagaaaaggc aaaacgggat tttcctggtc agccagatat gtggaaggac gccttcaagc 1921 cggatttttc acacatcaag ctacagcttg cacctcaggg cggctttgac aagaatggca 1981 acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg attgcccgtg 2041 catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtccc acaatcacca 2101 ctttcaattt cgaccggaac agaatcacag cattcagaca attggctgca gaaaacaagt 2161 atggactggt ggataccatg aaagttggca atcaactaaa aggagtgaaa accatggaag 2221 aactcaaaca agcaatcagg aatgtgacca tcaagaggtg ccggatcatc tacggtggat 2281 ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag gtcaagaaca 2341 cctctataca gaccaacaac gagttggccg gggccctgca ccatcttaaa catgcccgaa 2401 tcaggtacta tgtcaaatgt gtgcaagaag cagtctactc catcatacaa attgccggcg 2461 ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc tggtcgaagc 2521 cacaattaga tcaaaatgaa tcagagacca aggaagaggc ccccaagtca gaagatgacg 2581 agttcatcat atcttctaag gatatcaagg aggaaggaaa gaagggcaaa aacaaaactg 2641 gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag gagtatgacg 2701 agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag tatcttcaag 2761 acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa gacttctgtg 2821 aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa caaagaaagg 2881 aagagagggc cacactaggg ctggtaacag gttcagaaat cagaagaaga aaccctgatg 2941 atttcaaacc caaggggaag ctgtgggccg atgacaacag aagtgttgac tacaatgaga 3001 aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt ggttctggct 3061 ggggcttctg ggtatcacca agcctgttca taacatcaac tcatgtgatc cctgcaggca 3121 taacagaagc atttggagtc cccatcaaac aaatccagat ccacaaatca ggtgaatttt 3181 gccgattcag attcccaaaa ccaattagac cagatgtgac aggaatgatc ttggaagaag 3241 gtgcgcctga aggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga gagctcatgc 3301 ctcttgcagc cagaatggga acacacgcaa ccatgaagat tcaaggccgc atggttggcg 3361 gacagatggg tatgttgctc actggatcaa atgccaaagg aatggatttg ggaacgactc 3421 ctggtgactg tggctgccct tacatctata aaaggggcaa tgactatata gtcattgggg 3481 tgcacactgc agcagcccgt ggtggaaaca ccgtcatctg tgccacacag ggaagtgagg 3541 gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca cccattctag 3601 gccctggggg cgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca tcgaacacgc 3661 cccttccacc agggacatat gagcctgcct acctcggtgg ccgtgacccg cgtgttaggg 3721 gtgggccctc cttacagcag gtaatgagag accagttgaa gccattcact gaacccaggg 3781 gcaaacctcc aagaccaagt gttttggaag cagccaaaca aactattatc aatgtccttg 3841 aacaaaccct ggatcctcca caaaaatgga catacgcaca ggcgtgtgcc tcacttgaca 3901 aaaccacctc cagcgggcat ccccatcacg tccgaaagaa tgaattctgg aatggtgaga 3961 ccttcactgg taaattggca gaccaagcat caaaagcaaa cctaatgttt gaggaaggga 4021 aacacatgac accagtgtac acagcagcac tcaaggatga gctagttaag actgagaaaa 4081 tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc atgatccggt 4141 gcgctaggtc atttggtggg ctcatggacg agatgaaggc acactgcata tcactcccag 4201 tgcgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa cattccagat 4261 acaaatacca ctatgatgca gactactctc gttgggattc aacacaacag agggcagtat 4321 tagcagcagc cttggaaatc atggtcagat tctctgcaga accacaattg gcacaaatag 4381 tcgctgagga tctactggcc cctagtgtag tagatgtagg agactttaaa atcacaataa 4441 atgaagggct tccatctggc gtgccatgca cttctcaatg gaactccatc gcacactggc 4501 tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt atacaagcaa 4561 attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata aaattggacc 4621 ctgaacagtt gaccgctaag ttgaaggagt acggcctgaa accaacccgc ccagacaaga 4681 ccgagggacc cctgatcatc agtgaagatt tgaacggact cactttcctc cgaaggacgg 4741 tgactcgtga cccagctggc tggtttggaa aactggacca aagttcaatt ttgaggcaga 4801 tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata ccccattctc 4861 aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga ccctctttct 4921 acagtagaat cagtaaattg gtcataactg aacttaaaga aggtgggatg gacttttacg 4981 tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc acgtgggagg 5041 gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgagtga cgccaaccca 5101 tctgatgggt ccgcagccaa cctcgtacca gaggtcaaca atgaggttat ggctttggag 5161 cccgttgttg gtgccgccat cgcggcacct gtagcgggcc aacaaaatgt aattgacccc 5221 tggattagaa ataattttgt acaagcccct ggtggggagt ttacagtatc ccctagaaat 5281 gctccaggtg aaatactatg gagcgcgccc ctaggccctg acctaaatcc ctacctatcc 5341 catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt aattctcgcg 5401 gggaacgcgt tcaccgctgg gaagattata tttgcagcag tcccaccaaa ttttccaact 5461 gaaggcttaa gccctagcca ggtcactatg ttcccccata taatagtaga tgttagacaa 5521 ttggaacctg tgctgatccc cttacccgat gttaggaata atttctatca ttacaatcag 5581 tcaaatgact ccactattaa gttgatagca atgttgtaca caccacttag ggctaataat 5641 gctggggatg atgttttcac agtttcgtgc cgagttctca cgagaccatc ccccgatttt 5701 gatttcatat ttttagtacc acccacagtt gagtcaagaa ctaaaccatt ctctgtccca 5761 gttttaactg ttgaggagat gaccaattca agattcccca tccctttgga aaaattgttc 5821 acaggcccca gcagtgcatt tgttgttcaa ccacaaaacg gcagatgcac aactgatggc 5881 gtgctcctag gcaccaccca actttctcct gtcaacatct gcaccttcag aggggatgtc 5941 acccacatta caggtagtca taactacact atgaatttgg cttctcaaaa ttggaacaac 6001 tacgacccaa cagaagaaat cccagccccc ctaggaactc cagattttgt ggggaagatt 6061 caaggcatgc tcacccaaac cacaaggaca gatggttcaa cacgcggcca caaagctaca 6121 gtgtacactg ggagcgccga ctttgctcca aaactgggta gagttcaatt tgaaactgac 6181 acaaaccatg attttgaagt taatcaaaac acaaaattca ccccagtcgg tgtcatccaa 6241 gatggtagca ccacccaccg aaacgaaccc caacagtggg tgctcccaag ttactcaggc 6301 agaaatactc acaatgtaca tttggccccc gctgtagccc ccacctttcc gggtgagcaa 6361 cttctcttct tcagatctac catgcccgga tgcagcgggt accccaacat ggatttggac 6421 tgtctgctcc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc agcacaatct 6481 gatgtggctc tgttaagatt tgtgaatcca gacacaggta gggttttgtt tgagtgcaag 6541 cttcacaaat caggctatgt tacagtggct cacactggcc aacatgattt ggttatcccc 6601 cccaatggtt actttaggtt tgattcctgg gtcaaccagt tctacacgct tgcccccatg 6661 ggaaatggaa cggggcgtag acgtgcagta taatggctgg agctttcttt gctggattgg 6721 catctgatgt cctcggctct ggacttggtt cccttatcaa tgctggggct ggggccatca 6781 accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc caatttagca 6841 gcaatttgca acaggcttcc tttcaacatg ataaagagat gctccaagca caaattgagg 6901 ccaccaaaaa gctacaacag gaaatgatga gagttaagca ggcaatgctc ctagagggtg 6961 ggttctctga gacagatgca gcccgcgggg caattaacgc ccccatgaca aaggctttgg 7021 actggagcgg gacaaggtac tgggctccag atgctagaat tacaacatac aatgcaggcc 7081 acttttccac ccctcaacca tcgggggcac tgccaggaag agctaatctt agggatgctg 7141 tccctgctcg gggaccctcc accaaacctt ctaactcttc tactgccacc tctgtgtact 7201 caaatcaaac tatttcaacg agacttggtt ctacagcagg ttctggaacc agtgtctcga 7261 gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaatagg aatttgtcac 7321 ctttcatgag gggggcccac aacatatcat ttgtcacccc accatctagt agatcctcta 7381 gtcaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact ggcgctttca 7441 acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca cgggtgtaat 7501 gtgaaaagac aaaactgatt atctttcttt ttcttttc //