Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC769683 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P16 |
ORF1: 1..5093
ORF2: 5074..6696
ORF3: 6696..7502
LOCUS LC769683 7558 bp RNA linear VRL 11-JUL-2025
DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10847, nearly
complete genome.
ACCESSION LC769683
VERSION LC769683.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Lo,M., Doan,Y.H., Mitra,S., Saha,R., Miyoshi,S.I., Kitahara,K.,
Dutta,S., Oka,T. and Chawla-Sarkar,M.
TITLE Comprehensive full genome analysis of norovirus strains from
eastern India, 2017-2021
JOURNAL Gut Pathog 16 (1), 3 (2024)
PUBMED 38238807
REMARK DOI:10.1186/s13099-023-00594-5
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7558)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7558
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus GII/Hu/IN/2019/GII.4
Sydney[P16]/NICED-BCH-10847"
/isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10847"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India: Kolkata"
/collection_date="2019-03-26"
/note="genotype: GII.4 Sydney[P16]"
gene <1..5093
/gene="POL"
CDS <1..5093
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BEI74093.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDEPQKPPRPPTPELVKRIPPPPPNGEEEGEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTGGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5074..6696
/gene="VP1"
CDS 5074..6696
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74094.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFRTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEVNQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6696..7502
/gene="VP2"
CDS 6696..7502
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74095.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDAVPARGPSTKPS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 tggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaggaaaaat
61 cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc ctcggggcta
121 ggcccaaaca gcctgccccg agagacgaac cacaaaagcc cccaagacca ccaactcccg
181 agttggtcaa gaggataccc cctcctccac ctaatggcga agaagaagga gaaccagtca
241 ttaggtatga ggtaaagagt gggatctctg gcctgcccga gctcacaaca gtcccccaac
301 cggacgtggc caacacagca tttagtgttc caccactgag cttgagagaa aacagggagg
361 ccaaggagcc gctaacaggg gcaatactag agatgtggga cggagagata taccactatg
421 gcctgtacgt ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca
481 tggcgagagt ggagctgacg ccgctgtcat tgtactggcg tgtggtgtac actccccaat
541 acctcatctc ccctgaaact ctcaagaggc tcaacggaga ggcgtttcct tacaccgctt
601 tcgacaacaa ctgctatgcc ttttgctgct gggtgttaga cctcaatgac tcatggctta
661 gcaggaggat ggtgcaaaga acaacgggct tcttcagacc ttaccaagag tggaacagaa
721 aacccttgcc taccatggat gactccaaaa taaagaaggt agcaaatata ttcctatgtt
781 cattgtccac attattcacc agacccataa aagacctcat agggaaaatt aaaccattaa
841 atatattgaa catcctggca acgtgtgact ggacgtttgc cggaatagtg gagtctctga
901 tattgcttgc tgaactcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg
961 ctcccttact cggggactac gagttgcaag ggccagaaga cctcgccgtt gaactcgtac
1021 ctgtggtaat gggagggatt ggcttggtgt tgggattcac caaagagaaa attggcaaaa
1081 tgttgtcctc agcagcatca acactcaggg cttgtaaaga tcttggtgcc tatggcttag
1141 agatactcaa attggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagctag
1201 ccatggtgag ggccatagag gatgccgtac tagatcttga ggcaatagaa aataaccaca
1261 tgacaaccct gttgaaagac aaagacagct tagcaacata catgaaaaca ctggacatgg
1321 aggaggagaa agccagaagg ttgtccacaa aatctgcatc ccctgacata gttgggacaa
1381 tcaacgccct gctggctcga atagcagcgg ccaggtcatt agtccacagg gccaaggaag
1441 aactgtctag caggataagg ccagtggttg ttatgatatc tggcaaacca ggaataggca
1501 aaactcatct ggccagggag gtggcaagaa aggtggcatc cactctcaca ggggatcaga
1561 gagtcggact cataccaaga aacggtgtgg accattggga tgcatacaaa ggtgagagag
1621 tcgtgttgtg ggacgactat ggcatgagta accccattca tgatgctctt cgcatacaag
1681 aattggctga tacgtgcccc cttaccttaa attgtgacag aattgaaaat aagggaaaag
1741 tttttgacag tgaagtcata ataattacaa caaaccttgc caacccagcc ccacttgatt
1801 atgtcaactt tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct gaggcaccag
1861 aagtagaaaa ggcaaaacgg gattttcctg gtcagccaga tatgtggaag gacgccttca
1921 agccggattt ttcacacatc aagctacagc ttgcacctca gggcggcttt gacaagaatg
1981 gcaacacccc acatgggaaa ggagtgatga agaccctcac taccggttct ctgattgccc
2041 gtgcatcagg cctactgcat gagaggatgg atgaatttga actccaaggt cccacaatca
2101 ccactttcaa tttcgaccgg aacagaatca cagcattcag acaattggct gcagaaaaca
2161 agtatggact ggtggatacc atgaaagttg gcaatcaact aaaaggagtg aaaaccatgg
2221 aagaactcaa acaagcaatc aggaatgtga ccatcaagag gtgccggatc atctacggtg
2281 gatccacgta tgaccttgaa tctgatggca agggcaaagt tttggtggaa aaggtcaaga
2341 acacctctat acagaccaac aacgagttgg ccggggccct gcaccatctt aaacatgccc
2401 gaatcaggta ctatgtcaaa tgtgtgcaag aagcagtcta ctccatcata caaattgccg
2461 gcgctgcgtt tgtcaccacg cgcattgcac gccgcatgaa catacaagaa ctctggtcga
2521 agccacaatt agatcaaaat gaatcagaga ccaaggaaga ggcccccaag tcagaagatg
2581 acgagttcat catatcttct aaggatatca aggaggaagg aaagaagggc aaaaacaaaa
2641 ctggccgtgg caagaaacac actgcattct ccagcaaggg cttgagcgat gaggagtatg
2701 acgagtacaa gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc
2761 aagacagaga caggtactat gaggagctcg ccattgccaa ggccacggaa gaagacttct
2821 gtgaagagga ggagatcaaa atccgtcaga gaattttccg tcccaccagg aaacaaagaa
2881 aggaagagag ggccacacta gggctggtaa caggttcaga aatcagaaga agaaaccctg
2941 atgatttcaa acccaagggg aagctgtggg ccgatgacaa cagaagtgtt gactacaatg
3001 agaaactgga ctttgaggcc cccccaagca tatggtctag gattgtgagc tttggttctg
3061 gctggggctt ctgggtatca ccaagcctgt tcataacatc aactcatgtg atccctgcag
3121 gcataacaga agcatttgga gtccccatca aacaaattca gatccacaaa tcaggtgaat
3181 tttgccgatt cagattccca aaaccaatta gaccagatgt gacaggaatg atcttggaag
3241 aaggtgcgcc tgaaggcacc gtggcaactg tgctcatcaa acgccccacc ggagagctca
3301 tgcctcttgc agccagaatg ggaacacacg caaccatgaa gattcaaggc cgcatggttg
3361 gcggacagat gggtatgttg ctcactggat caaatgccaa aggaatggat ttgggaacaa
3421 ctcctggtga ctgtggctgc ccttacatct ataaaagggg caatgactat atagtcattg
3481 gggtgcacac tgcagcagcc cgtggtggaa acaccgtcat ctgtgccaca cagggaagtg
3541 agggtgaggc aactcttgag ggtggagatg acaaaggaac atactgtggg gcacccattc
3601 taggccctgg gggcgcacca aaattgagca ccaaaaccaa attttggagg tcatcgaaca
3661 cgccccttcc accagggaca tatgagcctg cctacctcgg tggccgtgac ccgcgtgtta
3721 ggggtgggcc ctccttacag caggtaatga gagaccagtt gaagccattc actgaaccca
3781 ggggcaaacc tccaagacca agtgttttgg aagcagccaa acaaactatt atcaatgtcc
3841 ttgaacaaac cctggatcct ccacaaaaat ggacatacgc acaggcgtgt gcctcacttg
3901 acaaaaccac ctccagcggg catccccatc acgtccgaaa gaatgaattc tggaatggtg
3961 agaccttcac tggtaaattg gcagaccaag catcaaaagc aaacctaatg tttgaggaag
4021 ggaaacacat gacaccagtg tacacagcag cactcaagga tgagctagtt aagactgaga
4081 aaatctatgg aaagatcaag aagagactgc tctggggctc tgacttgtcc accatgatcc
4141 ggtgcgctag gtcatttggt gggctcatgg acgagatgaa ggcacactgc atatcactcc
4201 cagtacgagt tggcatgaat atgaatgaag atggcccaat aatatttgag aaacattcca
4261 gatacaaata ccactatgat gcagactact ctcgttggga ttcaacacaa cagagggcag
4321 tattagcagc agccttggaa atcatggtca gattctctgc agaaccacaa ttggcacaaa
4381 tagtcgctga ggatctactg gcccctagtg tagtagatgt aggagacttt aaaatcacaa
4441 taaatgaagg gcttccatct ggcgtgccat gcacttctca atggaactcc atcgcacact
4501 ggctgctaac tctctgtgcc ttgtctgaag tcaccaaact gtcccctgac attatacaag
4561 caaattccat gttctcattt tacggtgatg acgagattgt cagcaccgac ataaaattgg
4621 accctgaaca gttgaccgct aagttgaagg agtacggcct gaaaccaacc cgcccagaca
4681 agaccggggg acccctgatc atcagtgaag atttgaacgg actcactttc ctccgaagga
4741 cggtgactcg tgacccagct ggctggtttg gaaaactgga ccaaagttca attttgaggc
4801 agatgtactg gactagagga ccaaatcatg aagaccccaa tgagacaatg ataccccatt
4861 ctcaaagacc catacagctc atggcactgc ttggtgaagc ctctcttcac ggaccctctt
4921 tctacagtag aatcagtaaa ttggtcataa ctgaacttaa agaaggtggg atggactttt
4981 acgtgccaag gcaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg
5041 agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgag tgacgccaac
5101 ccatctgatg ggtccgcagc caacctcgta ccagaggtca acaatgaggt tatggctttg
5161 gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa tgtaattgac
5221 ccctggatta gaaataattt tgtacaagcc cctggtgggg agtttacagt atcccctaga
5281 aatgctccag gtgaaatact atggagcgcg cccctaggcc ctgacctaaa tccctaccta
5341 tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc
5401 gcggggaacg cgttcaccgc tgggaagatt atatttgcag cagtcccacc aaattttcga
5461 actgaaggct taagccctag ccaggtcact atgttccccc atataatagt agatgttaga
5521 caattggaac ctgtgctgat ccccttaccc gatgttagga ataatttcta tcattacaat
5581 cagtcaaatg actccactat taagttgata gcaatgttgt acacaccact tagggctaat
5641 aatgctgggg atgatgtttt cacagtttcg tgccgagttc tcacgagacc atcccccgat
5701 tttgatttca tatttttagt accacccaca gttgagtcaa gaactaaacc attctctgtc
5761 ccagttttaa ctgttgagga gatgaccaat tcaagattcc ccatcccttt ggaaaaattg
5821 ttcacaggcc ccagcagtgc atttgttgtt caaccacaaa acggcagatg cacaactgat
5881 ggcgtgctcc taggcaccac ccaactttct cctgtcaaca tctgcacctt cagaggggat
5941 gtcacccaca ttacaggtag tcataactac actatgaatt tggcttctca aaattggaac
6001 aactacgacc caacagaaga aatcccagcc cccctaggaa ctccagattt tgtggggaag
6061 attcaaggca tgctcaccca aaccacaagg acagatggtt caacacgcgg ccacaaagct
6121 acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact
6181 gacacaaacc atgattttga agttaatcaa aacacaaaat tcaccccagt cggtgtcatc
6241 caagatggta gcaccaccca ccgaaacgaa ccccaacagt gggtgctccc aagttactca
6301 ggcagaaata ctcacaatgt acatttggcc cccgctgtag cccccacctt tccgggtgag
6361 caacttctct tcttcagatc taccatgccc ggatgcagcg ggtaccccaa catggatttg
6421 gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacaa
6481 tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt gtttgagtgc
6541 aagcttcaca aatcaggcta tgttacagtg gctcacactg gccaacatga tttggttatc
6601 ccccccaatg gttactttag gtttgattcc tgggtcaacc agttctacac gcttgccccc
6661 atgggaaatg gaacggggcg tagacgtgca gtataatggc tggagctttc tttgctggat
6721 tggcatctga tgtcctcggc tctggacttg gttcccttat caatgctggg gctggggcca
6781 tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc ttccagttta
6841 gcagcaattt gcaacaggct tcctttcaac atgataaaga gatgctccaa gcacaaattg
6901 aggccaccaa aaagctacaa caggaaatga tgagagttaa gcaggcaatg ctcctagagg
6961 gtgggttctc tgagacagat gcagcccgcg gggcaattaa cgcccccatg acaaaggctt
7021 tggactggag cgggacaagg tactgggctc cagatgctag aattacaaca tacaatgcag
7081 gccacttttc cacccctcaa ccatcggggg cactgccagg aagagctaat cttagggatg
7141 ctgtccctgc tcggggaccc tccaccaaac cttctaactc ttctactgcc acctctgtgt
7201 actcaaatca aactatttca acgagacttg gttctacagc aggttctgga accagtgtct
7261 cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaaat aggaatttgt
7321 cacctttcat gaggggggcc cacaacatat catttgtcac cccaccatct agcagatcct
7381 ctagtcaagg cacagtctca accgtgccta aagaaatttt ggactcctgg actggcgctt
7441 tcaacacgcg caggcagcct ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt
7501 aatgtgaaaa gacaaaactg attatctttc tttttctttt ctttagtgtc ttttaaaa
//