Typing tool
|
Complete norovirus genomes
LC769683 | GII.4 Sydney | ||
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GII.P16 |
ORF1: 1..5093 ORF2: 5074..6696 ORF3: 6696..7502LOCUS LC769683 7558 bp RNA linear VRL 17-OCT-2023 DEFINITION Norovirus GII Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10847, nearly complete genome. ACCESSION LC769683 VERSION LC769683.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Doan,Y.H. TITLE Norovirus in India JOURNAL Unpublished REFERENCE 2 (bases 1 to 7558) AUTHORS Doan,Y.H. and Oka,T. TITLE Direct Submission JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of Infectious Diseases, Center for Emergency Preparedness and Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7558 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Norovirus GII/Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10847" /isolate="Hu/IN/2019/GII.4 Sydney[P16]/NICED-BCH-10847" /host="Homo sapiens" /db_xref="taxon:122929" /country="India: Kolkata" /collection_date="2019-03-26" /note="genotype: GII.4 Sydney[P16]" gene <1..5093 /gene="POL" CDS <1..5093 /gene="POL" /codon_start=3 /product="nonstructural polyprotein" /protein_id="BEI74093.1" /translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP APRDEPQKPPRPPTPELVKRIPPPPPNGEEEGEPVIRYEVKSGISGLPELTTVPQPDV ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM ARVELTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKH ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS EIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGK PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG LKPTRPDKTGGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE DPNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMF RWMRFSDLSTWEGDRNLAPNFVNEDGVE" gene 5074..6696 /gene="VP1" CDS 5074..6696 /gene="VP1" /codon_start=1 /product="major capsid protein" /protein_id="BEI74094.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFRTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEVNQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" gene 6696..7502 /gene="VP2" CDS 6696..7502 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BEI74095.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDAVPARGPSTKPS NSSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 tggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaggaaaaat 61 cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc ctcggggcta 121 ggcccaaaca gcctgccccg agagacgaac cacaaaagcc cccaagacca ccaactcccg 181 agttggtcaa gaggataccc cctcctccac ctaatggcga agaagaagga gaaccagtca 241 ttaggtatga ggtaaagagt gggatctctg gcctgcccga gctcacaaca gtcccccaac 301 cggacgtggc caacacagca tttagtgttc caccactgag cttgagagaa aacagggagg 361 ccaaggagcc gctaacaggg gcaatactag agatgtggga cggagagata taccactatg 421 gcctgtacgt ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca 481 tggcgagagt ggagctgacg ccgctgtcat tgtactggcg tgtggtgtac actccccaat 541 acctcatctc ccctgaaact ctcaagaggc tcaacggaga ggcgtttcct tacaccgctt 601 tcgacaacaa ctgctatgcc ttttgctgct gggtgttaga cctcaatgac tcatggctta 661 gcaggaggat ggtgcaaaga acaacgggct tcttcagacc ttaccaagag tggaacagaa 721 aacccttgcc taccatggat gactccaaaa taaagaaggt agcaaatata ttcctatgtt 781 cattgtccac attattcacc agacccataa aagacctcat agggaaaatt aaaccattaa 841 atatattgaa catcctggca acgtgtgact ggacgtttgc cggaatagtg gagtctctga 901 tattgcttgc tgaactcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg 961 ctcccttact cggggactac gagttgcaag ggccagaaga cctcgccgtt gaactcgtac 1021 ctgtggtaat gggagggatt ggcttggtgt tgggattcac caaagagaaa attggcaaaa 1081 tgttgtcctc agcagcatca acactcaggg cttgtaaaga tcttggtgcc tatggcttag 1141 agatactcaa attggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagctag 1201 ccatggtgag ggccatagag gatgccgtac tagatcttga ggcaatagaa aataaccaca 1261 tgacaaccct gttgaaagac aaagacagct tagcaacata catgaaaaca ctggacatgg 1321 aggaggagaa agccagaagg ttgtccacaa aatctgcatc ccctgacata gttgggacaa 1381 tcaacgccct gctggctcga atagcagcgg ccaggtcatt agtccacagg gccaaggaag 1441 aactgtctag caggataagg ccagtggttg ttatgatatc tggcaaacca ggaataggca 1501 aaactcatct ggccagggag gtggcaagaa aggtggcatc cactctcaca ggggatcaga 1561 gagtcggact cataccaaga aacggtgtgg accattggga tgcatacaaa ggtgagagag 1621 tcgtgttgtg ggacgactat ggcatgagta accccattca tgatgctctt cgcatacaag 1681 aattggctga tacgtgcccc cttaccttaa attgtgacag aattgaaaat aagggaaaag 1741 tttttgacag tgaagtcata ataattacaa caaaccttgc caacccagcc ccacttgatt 1801 atgtcaactt tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct gaggcaccag 1861 aagtagaaaa ggcaaaacgg gattttcctg gtcagccaga tatgtggaag gacgccttca 1921 agccggattt ttcacacatc aagctacagc ttgcacctca gggcggcttt gacaagaatg 1981 gcaacacccc acatgggaaa ggagtgatga agaccctcac taccggttct ctgattgccc 2041 gtgcatcagg cctactgcat gagaggatgg atgaatttga actccaaggt cccacaatca 2101 ccactttcaa tttcgaccgg aacagaatca cagcattcag acaattggct gcagaaaaca 2161 agtatggact ggtggatacc atgaaagttg gcaatcaact aaaaggagtg aaaaccatgg 2221 aagaactcaa acaagcaatc aggaatgtga ccatcaagag gtgccggatc atctacggtg 2281 gatccacgta tgaccttgaa tctgatggca agggcaaagt tttggtggaa aaggtcaaga 2341 acacctctat acagaccaac aacgagttgg ccggggccct gcaccatctt aaacatgccc 2401 gaatcaggta ctatgtcaaa tgtgtgcaag aagcagtcta ctccatcata caaattgccg 2461 gcgctgcgtt tgtcaccacg cgcattgcac gccgcatgaa catacaagaa ctctggtcga 2521 agccacaatt agatcaaaat gaatcagaga ccaaggaaga ggcccccaag tcagaagatg 2581 acgagttcat catatcttct aaggatatca aggaggaagg aaagaagggc aaaaacaaaa 2641 ctggccgtgg caagaaacac actgcattct ccagcaaggg cttgagcgat gaggagtatg 2701 acgagtacaa gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc 2761 aagacagaga caggtactat gaggagctcg ccattgccaa ggccacggaa gaagacttct 2821 gtgaagagga ggagatcaaa atccgtcaga gaattttccg tcccaccagg aaacaaagaa 2881 aggaagagag ggccacacta gggctggtaa caggttcaga aatcagaaga agaaaccctg 2941 atgatttcaa acccaagggg aagctgtggg ccgatgacaa cagaagtgtt gactacaatg 3001 agaaactgga ctttgaggcc cccccaagca tatggtctag gattgtgagc tttggttctg 3061 gctggggctt ctgggtatca ccaagcctgt tcataacatc aactcatgtg atccctgcag 3121 gcataacaga agcatttgga gtccccatca aacaaattca gatccacaaa tcaggtgaat 3181 tttgccgatt cagattccca aaaccaatta gaccagatgt gacaggaatg atcttggaag 3241 aaggtgcgcc tgaaggcacc gtggcaactg tgctcatcaa acgccccacc ggagagctca 3301 tgcctcttgc agccagaatg ggaacacacg caaccatgaa gattcaaggc cgcatggttg 3361 gcggacagat gggtatgttg ctcactggat caaatgccaa aggaatggat ttgggaacaa 3421 ctcctggtga ctgtggctgc ccttacatct ataaaagggg caatgactat atagtcattg 3481 gggtgcacac tgcagcagcc cgtggtggaa acaccgtcat ctgtgccaca cagggaagtg 3541 agggtgaggc aactcttgag ggtggagatg acaaaggaac atactgtggg gcacccattc 3601 taggccctgg gggcgcacca aaattgagca ccaaaaccaa attttggagg tcatcgaaca 3661 cgccccttcc accagggaca tatgagcctg cctacctcgg tggccgtgac ccgcgtgtta 3721 ggggtgggcc ctccttacag caggtaatga gagaccagtt gaagccattc actgaaccca 3781 ggggcaaacc tccaagacca agtgttttgg aagcagccaa acaaactatt atcaatgtcc 3841 ttgaacaaac cctggatcct ccacaaaaat ggacatacgc acaggcgtgt gcctcacttg 3901 acaaaaccac ctccagcggg catccccatc acgtccgaaa gaatgaattc tggaatggtg 3961 agaccttcac tggtaaattg gcagaccaag catcaaaagc aaacctaatg tttgaggaag 4021 ggaaacacat gacaccagtg tacacagcag cactcaagga tgagctagtt aagactgaga 4081 aaatctatgg aaagatcaag aagagactgc tctggggctc tgacttgtcc accatgatcc 4141 ggtgcgctag gtcatttggt gggctcatgg acgagatgaa ggcacactgc atatcactcc 4201 cagtacgagt tggcatgaat atgaatgaag atggcccaat aatatttgag aaacattcca 4261 gatacaaata ccactatgat gcagactact ctcgttggga ttcaacacaa cagagggcag 4321 tattagcagc agccttggaa atcatggtca gattctctgc agaaccacaa ttggcacaaa 4381 tagtcgctga ggatctactg gcccctagtg tagtagatgt aggagacttt aaaatcacaa 4441 taaatgaagg gcttccatct ggcgtgccat gcacttctca atggaactcc atcgcacact 4501 ggctgctaac tctctgtgcc ttgtctgaag tcaccaaact gtcccctgac attatacaag 4561 caaattccat gttctcattt tacggtgatg acgagattgt cagcaccgac ataaaattgg 4621 accctgaaca gttgaccgct aagttgaagg agtacggcct gaaaccaacc cgcccagaca 4681 agaccggggg acccctgatc atcagtgaag atttgaacgg actcactttc ctccgaagga 4741 cggtgactcg tgacccagct ggctggtttg gaaaactgga ccaaagttca attttgaggc 4801 agatgtactg gactagagga ccaaatcatg aagaccccaa tgagacaatg ataccccatt 4861 ctcaaagacc catacagctc atggcactgc ttggtgaagc ctctcttcac ggaccctctt 4921 tctacagtag aatcagtaaa ttggtcataa ctgaacttaa agaaggtggg atggactttt 4981 acgtgccaag gcaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg 5041 agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgag tgacgccaac 5101 ccatctgatg ggtccgcagc caacctcgta ccagaggtca acaatgaggt tatggctttg 5161 gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa tgtaattgac 5221 ccctggatta gaaataattt tgtacaagcc cctggtgggg agtttacagt atcccctaga 5281 aatgctccag gtgaaatact atggagcgcg cccctaggcc ctgacctaaa tccctaccta 5341 tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc 5401 gcggggaacg cgttcaccgc tgggaagatt atatttgcag cagtcccacc aaattttcga 5461 actgaaggct taagccctag ccaggtcact atgttccccc atataatagt agatgttaga 5521 caattggaac ctgtgctgat ccccttaccc gatgttagga ataatttcta tcattacaat 5581 cagtcaaatg actccactat taagttgata gcaatgttgt acacaccact tagggctaat 5641 aatgctgggg atgatgtttt cacagtttcg tgccgagttc tcacgagacc atcccccgat 5701 tttgatttca tatttttagt accacccaca gttgagtcaa gaactaaacc attctctgtc 5761 ccagttttaa ctgttgagga gatgaccaat tcaagattcc ccatcccttt ggaaaaattg 5821 ttcacaggcc ccagcagtgc atttgttgtt caaccacaaa acggcagatg cacaactgat 5881 ggcgtgctcc taggcaccac ccaactttct cctgtcaaca tctgcacctt cagaggggat 5941 gtcacccaca ttacaggtag tcataactac actatgaatt tggcttctca aaattggaac 6001 aactacgacc caacagaaga aatcccagcc cccctaggaa ctccagattt tgtggggaag 6061 attcaaggca tgctcaccca aaccacaagg acagatggtt caacacgcgg ccacaaagct 6121 acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact 6181 gacacaaacc atgattttga agttaatcaa aacacaaaat tcaccccagt cggtgtcatc 6241 caagatggta gcaccaccca ccgaaacgaa ccccaacagt gggtgctccc aagttactca 6301 ggcagaaata ctcacaatgt acatttggcc cccgctgtag cccccacctt tccgggtgag 6361 caacttctct tcttcagatc taccatgccc ggatgcagcg ggtaccccaa catggatttg 6421 gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacaa 6481 tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt gtttgagtgc 6541 aagcttcaca aatcaggcta tgttacagtg gctcacactg gccaacatga tttggttatc 6601 ccccccaatg gttactttag gtttgattcc tgggtcaacc agttctacac gcttgccccc 6661 atgggaaatg gaacggggcg tagacgtgca gtataatggc tggagctttc tttgctggat 6721 tggcatctga tgtcctcggc tctggacttg gttcccttat caatgctggg gctggggcca 6781 tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc ttccagttta 6841 gcagcaattt gcaacaggct tcctttcaac atgataaaga gatgctccaa gcacaaattg 6901 aggccaccaa aaagctacaa caggaaatga tgagagttaa gcaggcaatg ctcctagagg 6961 gtgggttctc tgagacagat gcagcccgcg gggcaattaa cgcccccatg acaaaggctt 7021 tggactggag cgggacaagg tactgggctc cagatgctag aattacaaca tacaatgcag 7081 gccacttttc cacccctcaa ccatcggggg cactgccagg aagagctaat cttagggatg 7141 ctgtccctgc tcggggaccc tccaccaaac cttctaactc ttctactgcc acctctgtgt 7201 actcaaatca aactatttca acgagacttg gttctacagc aggttctgga accagtgtct 7261 cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaaat aggaatttgt 7321 cacctttcat gaggggggcc cacaacatat catttgtcac cccaccatct agcagatcct 7381 ctagtcaagg cacagtctca accgtgccta aagaaatttt ggactcctgg actggcgctt 7441 tcaacacgcg caggcagcct ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt 7501 aatgtgaaaa gacaaaactg attatctttc tttttctttt ctttagtgtc ttttaaaa //