Typing tool
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Typing tool
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Complete norovirus genomes
| LC769682 | GII.3 | |
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| GII.P16 |
ORF1: 1..5097
ORF2: 5078..6724
ORF3: 6724..7488
LOCUS LC769682 7564 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2019/GII.3[P16]/NICED-BCH-10486, nearly
complete genome.
ACCESSION LC769682
VERSION LC769682.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7564)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7564
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus
GII/Hu/IN/2019/GII.3[P16]/NICED-BCH-10486"
/isolate="Hu/IN/2019/GII.3[P16]/NICED-BCH-10486"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Kolkata"
/collection_date="2019-01-15"
/note="genotype: GII.3[P16]"
gene <1..5097
/gene="POL"
CDS <1..5097
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BEI74090.1"
/translation="KMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPK
QPAPRDEPQKPLRPSTPELVKRIPPPPPNGEEGEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMARVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMKVGNQLKGVKT
MEELKQAIRNVTIKRCRIIYSGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKGEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQVVAEDLLAPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGRLDQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5078..6724
/gene="VP1"
CDS 5078..6724
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74091.1"
/translation="MKMASNDAVPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVEVVLAGNAFTAGKIIFAAIPPNFPVDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRTSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6724..7488
/gene="VP2"
CDS 6724..7488
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74092.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRPTPNFKTNQAPKSTPSSGSTVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 aagatggcgt ctaacgacgc taccgttgcc gttgcttgca acaacaacaa cgacaaggag
61 aaatcttcag gtgaaggctt attcacaaat atgtcttcca ccttaaagaa agccctcggg
121 gctaggccca aacagcctgc cccgagagac gaaccacaaa agcccctaag gccatcaact
181 cccgagttgg tcaagaggat accccctcct ccacctaatg gcgaagaagg agaagaacca
241 gtcattaggt acgaggttaa gagtgggatc tctggcctgc ccgagcttac aacagtccct
301 caaccggacg tggccaacac ggcatttagt gttccaccac tgagcttgag agaaaacagg
361 gaggccaagg aaccgttaac aggggcaata ttagagatgt gggatggaga gatataccac
421 tatggcctgt acgtggagaa aggcctagtg ttgggtgtgc acaaaccacc tgcagccata
481 agcatggcaa gagtggagct ggcgccgctg tcattgtact ggcgtgtggt gtacactccc
541 caatacctca tctcccctga aactctcagg aggctcaacg gagaggcgtt cccttacacc
601 gcctttgaca acaactgcta cgccttttgc tgctgggtat tagacctcaa tgactcatgg
661 cttagcagga ggatggtgca aagaacaacg ggcttcttca ggccttacca agagtggaac
721 agaaaacccc tgcctaccat ggatgactcc aaaattaaga aggtagcaaa tatattccta
781 tgttcactgt ccacattatt caccagaccc ataaaagacc tcataggaaa aattagacca
841 ttaaacatat tgaatatcct agcaacgtgt gactggacgt ttgccggaat agtggagtct
901 ctgatattac ttgctgaact cttcggagtt ttctggacac ccccagatgt gtctgctatg
961 atcgctccct tactcgggga ctacgagttg caagggccgg aagacctcgc cgttgagctc
1021 gtacctgtag taatgggagg gattggtttg gtgttgggat tcaccaaaga gaaaattggc
1081 aaaatgttgt catcagcagc atcaacactc agggcttgca aagatcttgg tgcctatggc
1141 ttagagatac tcaaattggt catgaagtgg ttcttcccaa agaaagagga ggccaatgag
1201 ctagccatgg tgagggccat agaggatgcc gtactagatc ttgaggcaat agaaaataac
1261 cacatgacaa ccctgttaaa agacaaagac agcttagcaa catacatgaa aacactggac
1321 atggaggagg agaaagccag aaggttgtcc acaaaatctg catcccctga catagttggg
1381 acaatcaacg ccctgttggc tcgaatagca gcggccaggt cattagtcca cagggccaaa
1441 gaagagctat ctagcaggat aagaccagta gttgttatga tatctggcaa accaggaata
1501 ggcaaaactc atctggccag ggaggtggca agaaaggtag catccactct cacaggggat
1561 caaagagtcg gactcatacc aaggaacggc gtggaccatt gggatgcata caaaggcgag
1621 agagtcgtgc tgtgggacga ctatggcatg agtaacccca ttcatgatgc tcttcgcata
1681 caagaattag ctgatacgtg tccccttacc ttaaattgtg acagaattga aaataagggt
1741 aaagtctttg acagtgaagt cataataatt acaacaaacc ttgccaatcc agccccactt
1801 gattatgtca actttgaggc ctgttccagg agaattgatt tcctggtgta cgctgaggca
1861 ccagaagtag agaaggcaaa acgggacttt cctggtcagc cagacatgtg gaaggacgcc
1921 ttcaagccgg acttttcaca catcaagcta cagcttgcac ctcagggcgg ctttgacaag
1981 aatggcaaca ccccacatgg gaaaggagtg atgaagaccc tcactaccgg ttctctgatt
2041 gcccgcgcat caggcctact gcatgagagg atggatgaat ttgaactcca aggtcccaca
2101 atcaccacct tcaatttcga ccggaacaga gtcacagcat tcaggcaatt ggctgcagaa
2161 aacaagtatg gattggtgga taccatgaaa gttggcaatc aactaaaagg agtgaaaacc
2221 atggaagaac tcaaacaagc aatcaggaat gtgaccatca agaggtgccg gatcatctac
2281 agtggctcca cgtatgacct tgaatctgac ggcaagggca aagttttggt ggagaaagtc
2341 aagaacacct ctgtacagac caacaacgag ttggccgggg ccctgcacca tctcaaacat
2401 gcccgaatca ggtactatgt caaatgtgtg caagaagcag tctattccat catacaaatt
2461 gccggcgctg cgtttgttac cacgcgcatt gcacgccgca tgaacataca agaactatgg
2521 tcgaagccac aattagatca aaatgaatca gagactaaag gagaggcccc caagtcagaa
2581 gatgacgagt tcatcatatc ttctaaggac atcaaggagg agggaaagaa gggcaaaaac
2641 aaaactggcc gtggcaagaa acacactgca ttttccagca agggcttgag cgatgaggag
2701 tacgacgagt acaagaggat aagagaagag agaaatggga agtactctat agaggagtat
2761 cttcaagaca gagacaggta ctatgaggag ctcgccatcg ccaaggctac ggaagaagat
2821 ttctgtgaag aggaggagat caaaatccgt cagagaattt tccgtcccac caggaagcaa
2881 agaaaggaag agagggccac attagggcta gtaacaggtt cagaaatcag aaaaagaaac
2941 cctgatgact tcaaacccaa agggaagctg tgggccgatg acaacagaag tgttgactac
3001 aatgagaaac tggactttga ggccccccca agcatatggt ctaggattgt gagctttggt
3061 tctggctggg gcttctgggt atcaccaagc ttgttcataa catcaactca tgtaatcccc
3121 gcaggcataa cagaagcatt tggagtcccc atcaaacaaa ttcagatcca caaatcaggt
3181 gaattttgcc gattcagatt cccaaaacca attagaccag atgtgacagg aatgatctta
3241 gaagaaggtg cgcctgaagg caccgtggcg actgtgctca tcaaacgccc caccggagag
3301 ctcatgcctc ttgcagccag aatgggaaca cacgcaacca tgaaaattca aggccgcatg
3361 gttggcggac agatgggtat gttgctcacc ggatcaaatg ctaaaggaat ggatttggga
3421 acaactcctg gtgactgtgg ttgtccttac atctataaaa ggggcaatga ttatatagtc
3481 attggggtgc acactgcagc agcccgtggt ggaaacaccg tcatctgtgc cacacaggga
3541 agtgagggtg aggcaactct cgagggtgga gatgacaaag ggacatactg tggggcaccc
3601 attctaggcc ctgggggtgc accaaaattg agcaccaaaa ccaaattttg gaggtcatcg
3661 aacacgcccc ttccaccagg gacatatgaa cctgcctatc tcggtggccg tgatccgcgt
3721 gttaagggtg ggccctcctt gcagcaggtg atgagagacc agttgaagcc attcaccgaa
3781 cccaggggca aacctccaag accaagtgta ttggaagcag ccaaacaaac cattattaat
3841 gtcctcgaac aaaccctgga ccctccacaa aaatggacat acgcacaggc gtgtgcctca
3901 cttgacaaaa ccacctccag cgggcatccc catcacgtcc gaaagaatga attctggaat
3961 ggtgaaacct tcactggtaa attggcagat caagcatcaa aggcaaacct aatgtttgag
4021 gaagggaaac atatgacacc agtgtataca gcagcactca aggacgagct agtcaagact
4081 gagaaaatct atggaaagat caagaagaga ctgctctggg gctctgactt gtccaccatg
4141 atccggtgcg ctaggtcatt tggtgggctc atggacgaga tgaaggcaca ctgcatatca
4201 ctcccagtgc gagttggcat gaatatgaat gaagatggtc caataatatt tgagaagcat
4261 tccagataca aataccacta tgatgcagac tactctcgtt gggattcaac acaacagagg
4321 gcagtactag cggcagcctt ggaaatcatg gttagattct ctgcagaacc acaattggca
4381 caagtagtcg ctgaggatct gctggcccct agtgtagtag atgtaggaga cttcaaaatc
4441 acaataaatg aagggctccc atctggtgtg ccgtgcactt ctcaatggaa ctctatcgca
4501 cactggctgc taactctctg cgccttgtct gaagtcacca aactgtcccc tgacatcata
4561 caggcaaatt ccatgttctc attttacggt gatgacgaga ttgtcagcac cgacataaaa
4621 ttggaccctg aacagttaac tgccaaattg aaggagtacg gcctgaaacc aacccgccca
4681 gacaagaccg agggacccct gatcatcagt gaagatttga acggactcac tttcctccga
4741 aggacggtga ctcgtgaccc agctggctgg tttgggagac tggaccaaag ctcaattttg
4801 aggcagatgt actggactag aggaccaaat catgaagacc ccagtgagac aatgataccc
4861 cattctcaaa gacccataca gctcatggca ctgcttggtg aagcctctct tcacgggccc
4921 tctttctaca gtaaaatcag taaattggtc ataactgaac tcaaagaagg tgggatggac
4981 ttttacgtgc caaggcagga acccatgttc aggtggatga ggttttctga cttgagcacg
5041 tgggagggtg atcgcaatct ggctcccaat tttgtgaatg aagatggcgt cgaatgacgc
5101 cgttccatct aatgatggtg ccgccggcct cgtcccagag atcaacaatg aggcaatggc
5161 gctggagcca gtggcgggtg cagcgatagc agcacccctc actggtcagc aaaatataat
5221 tgatccctgg attatgaata attttgtgca agcacctggt ggtgagttta cagtgtcccc
5281 tagaaattcc cctggtgaag tccttcttaa tttggaactg ggcccagaaa taaatcccta
5341 tttggcccat cttgctagaa tgtataatgg ctatgcaggt ggatttgaag tggaggtggt
5401 cctagctgga aatgcgttta cagcaggaaa gataatcttt gcagccatcc cccccaattt
5461 tccagttgac aacttaagtg cagcacagat cacaatgtgc ccacatgtga tcgtggatgt
5521 caggcagttg gaaccagtca acctcccgat gcctgacgtt cgcaacaact tctttcatta
5581 taaccaaggg tctgactcga ggttacgcct aattgcaatg ctgtacacac ctcttagggc
5641 gaacaattct ggggatgatg tttttactgt gtcttgtaga gtgttaacta gacctagtcc
5701 tgatttctca ttcaacttcc ttgtgccacc tactgtggag tcaaagacaa aacccttttc
5761 cctccctatc ctgactatct ctgagatgtc caattctagg ttcccagtac caattgattc
5821 cctacatacc agccctactg aaaatattgt tgttcagtgc caaaatgggc gcgtcaccct
5881 tgatggtgaa ctgatgggca ccacccaact cttgcctagt caaatctgtg ctttcagggg
5941 cgttctcacc agatcaacaa gcagaaccag tgaccaggcc gatacagcaa cccctagatt
6001 gtttaattat tattggcata tacaattgga taatctaaat ggaacccctt atgatcctgc
6061 agaagacata ccaggcccct tagggacacc agatttccgt ggcaaagtct ttggcgtggc
6121 cagccagaga aatcctgatg ccacgactag ggcgcatgag gcaaagatag acaccacatc
6181 tggccgcttc accccaaagc taggttcatt agagatatcc actgagtcta gtgattttga
6241 ccaaaaccaa ccgacaagat tcaccccagt tggcattgga gttgaccatg aggcagactt
6301 tcaacaatgg accctacccg actatgctgg tcagttcaca cacaacatga acttagcccc
6361 agctgttgct cccaacttcc ctggtgagca gctccttttc ttccgctcac atttgccatc
6421 ttctggtggg cgatccaacg ggattctaga ctgcctggtt ccccaagaat gggtacagca
6481 cttctaccaa gagtcagccc cctctcagtc tcaagtggcc ctggttaggt atgttaatcc
6541 tgacactggc agagtgttat ttgaggctaa gctacataaa ctaggtttca tgactatagc
6601 caagaatggt gattctccaa taactgtccc tccaaatgga tactttaggt ttgaatcttg
6661 ggtgaacccc ttttacacac ttgcccccat gggaactggg aatgggcgca gaaggattca
6721 ataatggctg gagcttttat agcaggattg gctggtgaca tgctcacaaa tactgtagga
6781 tctttagtta acgcaggagc taatgctatt aatcaaacaa ttgattttga aaataataaa
6841 tatttgcaaa atgcttcttt taatcatgat aaggagatgt tgaatgcaca agttgaggca
6901 acaaagaagt tacaggctga catgattgct atcaaacaag gggctttgac cgctggcggc
6961 ttctccccta ctgatgcagc ccgtggggca attaacgccc ccatgacaaa agtcctagat
7021 tggaatggaa cgagatactg ggcaccaggt gccacctcca cgacctcgat gtcgggtggc
7081 tttacacatc aaactgtgca cagacccaca ccaaacttta aaacgaacca ggctcccaaa
7141 tccacaccca gcagtggatc tacagtgagg tcaaactcaa cccaaatcac tagcctgagc
7201 tcacactcgt ccgggtcgtc tcgatccagc gggtctacag tcatcagctc aataccatcc
7261 tctaacagga ctagggactg ggtcaaccaa caaaatttta atttggaacc acacatgcct
7321 ggatctctta ggacagcttt tgtctctcca ccatctagta cagcctctag ctcaggcaca
7381 gtctcaactg tgcccaaaaa tgttttggac tcctggacat ctgcgttcaa cacgcgcaga
7441 cagccgctat ttgcacacct tcgcagaagg ggggagtcaa atgtttagtg aaaagattat
7501 tttaaatttg gtttaaatta ggttcaattt gcaatctttt aaaaaaaaaa aaaaaaaaaa
7561 aaaa
//