Typing tool
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Typing tool
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Complete norovirus genomes
| LC769681 | GII.4 San Francisco | |
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| GII.P31 |
ORF1: 1..5095
ORF2: 5076..6701
ORF3: 6701..7507
LOCUS LC769681 7563 bp RNA linear VRL 17-OCT-2023
DEFINITION Norovirus GII Hu/IN/2018/GII.4[P31]/NICED-BCH-10206, nearly
complete genome.
ACCESSION LC769681
VERSION LC769681.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7563)
AUTHORS Doan,Y.H. and Oka,T.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Contact:Yen Hai Doan National Institute of
Infectious Diseases, Center for Emergency Preparedness and
Response; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7563
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Norovirus
GII/Hu/IN/2018/GII.4[P31]/NICED-BCH-10206"
/isolate="Hu/IN/2018/GII.4[P31]/NICED-BCH-10206"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="India: Howrah"
/collection_date="2018-11-20"
/note="genotype: GII.4[P31]"
gene <1..5095
/gene="POL"
CDS <1..5095
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BEI74087.1"
/translation="MASNDASAAAAANSNNDIEKSSSDGVFSNMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKGGVSGLPELTTVSQPEEN
NTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFPGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPGVEKAK
HDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMPD
LKQALKNVSIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQMEDTEETTSKDGCPK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5076..6701
/gene="VP1"
CDS 5076..6701
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BEI74088.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGSVTQTATGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGM
LTQTTRGDGSTRGHKATVYTGSNDFTPKLGRVQFETDTNHDFETNQNTKFTPVGVIQN
GDTAHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTLPGCSGYPNMDL
DCLLPQEWVQYFYQEAAPAQSEVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDL
VIPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6701..7507
/gene="VP2"
CDS 6701..7507
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BEI74089.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRNAAPARGSSSTPS
NSSIATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTHRQPLFAHIRRRGESRV"
ORIGIN
1 gatggcgtct aacgacgctt ccgctgccgc tgctgctaac agcaacaacg acatcgaaaa
61 atcttcaagt gacggtgtgt tttctaacat ggctgtcact tttaagcggg ccctcggggc
121 gcggcctaaa cagccgcccc cgaaggaaat accacccaga cccccacgac cacccacacc
181 agagttggtc aaaaagatcc cacctccccc acccaacggg gaggatgaac tagtggtttc
241 ttacagcgcc aaaggcggcg tttccggatt gcctgagctc accaccgtca gccaaccaga
301 agaaaacaac acggcgttca gtgttccccc gctcaatcaa agggagaaca gggacgctaa
361 ggaaccacta actggaacaa tcattgagat gtgggatgga gaaatctatc attacggcct
421 gtacgtagaa cgaggcctta tacttggtgt gcacaagcca ccggcagcca tcagccttgc
481 caaagttgag ctagcaccac tctctttgtt ctggagacct gtgtataccc cccagtacct
541 catctctcca gacactctta agagactaca tggagagtca ttcccctaca ccgcatttga
601 caacaactgc tacgcctttt gctgttgggt gttagaccta aacgactcat ggctaagtag
661 gagaatgatt cagagaacaa caggtttctt caggccatac caagaatgga acaggaaacc
721 cctccccact atggatgact ccaaattgaa gaaggtagcc aacatattct tgtgcacctt
781 gtcttcacta ttcaccagac ccattaagga cataatagga aaattgaaac ctcttaacat
841 cctcaatatt ctggccacat gtgattggac cttcccaggc atagtggaat ccctgatact
901 cttggcagaa ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc
961 cttactaggt gattatgaac tgcaaggacc tgaggacctt gcagtagaac tggtcccagt
1021 ggtgatgggg gggataggtt tggtgctagg attcaccaaa gagaaaattg gaaagatgct
1081 gtcgtccgct gcatccacct tgagagcttg caaagacctt ggtgcatacg gactggaaat
1141 tttgaaacta gtcatgaagt ggttctttcc aaagaaagag gaagcaaatg aactggctat
1201 ggtgagatcc atcgaggatg cagtgctaga cctcgaggca attgaaaaca accatatgac
1261 caccctgctc aaagacaaag acagcttggc aacctacatg agaacccttg accttgagga
1321 ggagaaagcc agaaaactct caaccaaatc cgcttcacct gatattgtgg gcacaatcaa
1381 cgctcttctg gcacgaatcg ccgctgcacg ctccctagtg catcgggcga aagaggagct
1441 ctccagcagg ccgagacctg ttgttgtgat gatatcggga aaaccaggga tagggaaaac
1501 tcaccttgcc agggagttgg ccaaaaagat cgcagcctcc ctcacagggg accagcgtgt
1561 gggtttgatc ccacgcaacg gcgtcgacca ctgggatgca tacaagggtg aaagagttgt
1621 cctatgggac gactatggga tgagtaaccc catacacgat gccctcaggt tgcaggaact
1681 tgctgacact tgccccctca cactaaattg tgataggatt gagaacaaag gaaaagtctt
1741 tgatagcgat gccataatta ttaccaccaa tctggccaac ccagcaccac tggattatgt
1801 caattttgaa gcgtgttcga ggcgcattga cttcctcgtg tacgcggaag ctcctggggt
1861 ggagaaggca aaacacgact tcccaggcca acctgacatg tggaagaacg ctttcagctc
1921 tgacttctca cacataaaac tggcattggc tccacagggt ggttttgaca agaacggtaa
1981 caccccgcat ggaaaaggtg tcatgaagac cctcaccact ggctctctca tcgcccgagc
2041 atcagggtta ctccacgaga ggctagatga atatgaatta caaggcccag ccctcaccac
2101 tttcaacttt gaccgcaaca aggtacttgc ttttagacag ctcgctgctg aaaacaagta
2161 tggtctaatg gacacaatga gagttggaaa acagctcaag gatgtcaaaa ctatgccaga
2221 ccttaaacaa gcactcaaga atgtctcgat caagaagtgc cagatagtgt acaatggtgg
2281 cacctacaca cttgaagccg acggcaaggg tagtgtgaaa gttgacaagg tgcaaagtgc
2341 caccgtgcaa accaacaatg aactagccgg cgccctgcac cacctaaggt gcgccagaat
2401 caggtattat gttaagtgtg tccaggaggc actgtactcc atcatccaaa tcgctggggc
2461 tgcgtttgtc accacgcgca tcgccaagcg catgaatata caaaatctct ggtccaagcc
2521 acagatggaa gacacagaag agacaaccag caaagatggt tgcccaaaac ccaaagatga
2581 tgaagagttc gtcgtttcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa
2641 gtccggccgt ggcaagaagc acacagcctt ctcaagcaaa gggctcagtg atgaagagta
2701 cgatgagtac aagagaatta gagaagagag gaatggtaag tactccatag aggagtacct
2761 ccaggacaga gataagtact atgaggaagt ggccattgcc agggcaactg aagaggactt
2821 ctgtgaagaa gaagaggcca aaatccggca gagaattttc aggccaacaa ggaaacaacg
2881 taaagaagag agggcctctc taggcttggt cacaggctca gaaatcagga agagaaaccc
2941 agaagacttc aaacccaagg gaaagctgtg ggctgatgat gacagaagtg ttgactacaa
3001 cgagaagctc aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc
3061 aggttggggt ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca
3121 aggtgcaaaa gagttcttcg gagtccccat caaacaaatc cagatacaca aatcaggtga
3181 attctgccga ctgagattcc caaaaccaat cagaactgat gtgacgggca tgattctgga
3241 agaaggtgcg ccagaaggaa ccgtggccac actgctcatc aagagaccaa ctggagagct
3301 catgcctttg gcagccagaa tgggaaccca tgcaaccatg aggattcagg ggcgcacggt
3361 tggaggacaa atgggtatgc tcttgacagg atccaacgcc aagagtatgg acttgggcac
3421 aacgccaggc gactgtggct gtccctacat ctacaaaaga gggaatgact acgtggttat
3481 aggagtccat acagccgctg cccgtggagg aaacactgtc atctgcgcca cccagggtag
3541 tgaaggagaa gccacacttg aaggaggtga caataaagga acgtactgtg gtgcaccaat
3601 tttgggccca gggagtgctc cgaaactcag tactaaaact aagttttgga gatcatccac
3661 aacgccactc ccaccaggca cctacgaacc agcctacctc ggtggcaagg accccagagt
3721 caaaggtggc ccttcattgc aacaagttat gagggaccaa ctaaaaccat tcacagaacc
3781 cagaggcaaa ccgccaagac caaatgtgtt ggaagctgcc aagaaaacca tcattaatgt
3841 tcttgagcaa acaattgacc caccccaaaa atggtcgttc gcgcaagctt gcgcatctct
3901 tgacaaaacc acctccagcg gccatccgca ccacatgcgg aaaaacgact gctggaatgg
3961 ggagtccttt acaggaaaat tggcagatca ggcctccaag gccaacctaa tgtttgaaga
4021 gggaaagaac atgactccag tttacacagg tgcgcttaaa gatgaattag tgaagactga
4081 caagatttat ggtaagatca agaagaggct cctgtggggc tcggacctgg cgaccatgat
4141 acggtgcgcc cgggctttcg gaggccttat ggatgaactc aaggcacatt gtgtcaccct
4201 tcctgtcaga gttggtatga acatgaatga agatggcccc ataatctttg agaagcactc
4261 cagatataaa tatcattatg atgctgatta ctccaggtgg gactcgacac aacaaaggga
4321 tgtgctagca gcagcactag aaatcatggt taagttctct ccagaaccac acttggccca
4381 gatagttgca gaagacctcc tttcccctag tgtaatggat gtgggtgact tccagatatc
4441 aataagtgaa ggactcccct ccggggtacc ttgcacctcc cagtggaatt ccatcgccca
4501 ctggctcctc accctttgtg cactctctga agtcacggac ctgtcccctg acatcattca
4561 ggccaactcc cttttctcct tttatggtga tgatgagatt gtgagtacag acataaagtt
4621 ggacccagag aagctgacgg caaaactcaa ggagtacggg ctgaagccaa cccgccccga
4681 caaaactgaa ggaccccttg tcatctctga agatctggat ggcctgacat tcctccggag
4741 gactgtgacc cgtgacccag ctggctggtt tggaaaattg gaacaaagtt cgattctcag
4801 gcaaatgtac tggaccaggg gtcccaacca tgaagaccca tctgaaacaa tgataccaca
4861 ctcccaaaga cccatacaat tgatgtcctt gctaggcgag gctgcactcc acggcccagc
4921 attttacagc aaaattagca aattggtcat tgcagaattg aaggaaggtg gcatggattt
4981 ttacgtgccc agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg
5041 ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca
5101 acccatctga tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc
5161 tggagcccgt tgttggtgcc gctattgcgg cgcctgtagc gggccaacaa aatgtgattg
5221 acccctggat tagaaacaat tttgtgcaag cccctggtgg agagtttaca gtatccccta
5281 gaaacgctcc aggtgaaata ctatggagcg cacccttagg ccctgatcta aacccctacc
5341 tatcccattt ggccagaatg tataatggtt atgcaggtgg ttttgaagtg caggtaattc
5401 ttgcggggaa tgcgttcacc gccggaaaga tcatatttgc agcagtccca ccaaatttcc
5461 caactgaagg cttgagccca agccaggtca ctatgttccc ccatataata gtagatgtta
5521 gacaactgga gcctgtgttg atccccttac ccgatgttag gaataatttc tatcactata
5581 accaatcaaa tgaccccacc attaagttga tagcaatgtt gtatacacca cttagggcta
5641 ataatgctgg ggatgatgtc ttcacggttt cttgccgagt cctcacgaga ccatcccctg
5701 attttgattt catattctta gtgccaccca cagttgaatc aagaactaaa ccattctctg
5761 tcccaatttt aactgttgag gagatgacta attcaagatt ccccattcct ttggaaaagt
5821 tgttcacagg tcccagcagt acctttgttg ttcaaccaca aaatggtagg tgcacgactg
5881 atggcgtgct cctaggtacc acccaattgt ctcctgtcaa catctgcacc ttcagaggga
5941 gtgtcaccca aacagcgaca ggtagtcata actacacaat gaatttggct tcccaaaatt
6001 ggaacagtta tgatccaaca gaagaaatcc cagcccctct aggaactcca gatttcgtag
6061 ggaagattca aggtatgctc acccagacca caagaggaga tggctcaaca cgcggccaca
6121 aagccacagt gtatactggg agcaacgatt ttactccaaa actgggtagg gtccaatttg
6181 aaactgacac aaaccacgat tttgagacta accaaaacac aaagttcact ccggtcggcg
6241 tcatccagaa cggagacact gcccaccgaa atgaacccca acaatgggtg ctcccaagtt
6301 attcaggcag aaatactcat aatgtgcatc tggcccccgc tgtagctccc acttttccgg
6361 gcgagcagct cctcttcttc agatctacct tgcctggatg cagcgggtac cccaacatgg
6421 atttggattg tctactcccc caggaatggg tgcagtactt ctatcaagag gcagccccag
6481 cacaatctga agtggctctg ttgaggtttg tgaatccaga cacaggtagg gttttgtttg
6541 agtgtaagct ccacaaatcg ggctatgtca cagtggccca cactggccaa catgatttgg
6601 ttatcccccc caatggttat ttcagatttg attcctgggt caaccaattc tacacgcttg
6661 cccccatggg aaatggaacg gggcgtagac gtgcattata atggctggag ctttctttgc
6721 tggattggca tctgatgtcc ttggctctgg acttggttcc ctgatcaacg ctggggctgg
6781 ggccatcaat caaaagattg aatttgaaaa taacagaaaa ttgcaacaag cttcattcca
6841 atttagtagc aacctacaac aggcttcctt tcaacacgac aaagagatgc tccaagcaca
6901 aattgaggcc accaaaaagc tgcaacagga aatgatgaaa gttaagcagg cagtgctcct
6961 agagggtggg ttttctgaga cagatgcagc ccgcggggca atcaacgccc ctatgacaaa
7021 agctttggac tggagcggta caaggtattg ggcacccgat gctaggacta caacatacaa
7081 tgcaggccgc ttctccaccc cccaaccatc gggggcactg ccaggaagag ctaacctcag
7141 gaatgctgcc cccgctcggg gttcctctag cacaccttcc aattcctcta ttgctacttc
7201 tgtgtactca aaccaaactg tttcaacgag acttggttct acagctggtt ctgggaccag
7261 tgtctcgagc ctcccgtcaa ctgcaaggac taggagctgg gttgaggatc aaaataggaa
7321 tctgtcgcct ttcatgaggg gggcccacaa catatcgttt gtcaccccac catctagcag
7381 atcctctagc caaggcacag tctcaaccgt gcctaaagaa gttttggact cctggactgg
7441 tgctttcaac acgcacaggc agcctctctt cgctcacatt cgtaggcgag gggagtcacg
7501 ggtgtaatgt gaaaagacaa aattgattat ctttcttttc tttagtgtct cttaaaaaaa
7561 aaa
//