Typing tool
|
Complete norovirus genomes
LC726090 | GII.2 | ||
---|---|---|---|
GII.P16 |
ORF1: 1..5083 ORF2: 5064..6692 ORF3: 6692..7471LOCUS LC726090 7483 bp RNA linear VRL 26-AUG-2022 DEFINITION Norovirus GII.2 Hu/GII.2[P16]/1022F/Tokyo/2021/Japan POL, VP1, VP2 genes for nonstructural polyprotein, capsid protein VP1, capsid protein VP2, partial and complete cds. ACCESSION LC726090 VERSION LC726090.1 KEYWORDS . SOURCE Norovirus GII.2 ORGANISM Norovirus GII.2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K., Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo April 2021-March 2022 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7483) AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K., Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Direct Submission JOURNAL Submitted (23-AUG-2022) Contact:Yu Yaoita Tokyo Metropolitan Institute of Public Health, Department of Microbiology; Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..7483 /organism="Norovirus GII.2" /mol_type="genomic RNA" /strain="Hu/GII.2[P16]/1022F/Tokyo/2021/Japan" /host="Homo sapiens" /db_xref="taxon:490039" /country="Japan:Tokyo" /collection_date="2021-12" gene <1..5083 /gene="POL" CDS <1..5083 /gene="POL" /note="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BDQ32386.1" /translation="DATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPR DKPQKPPRPPTPELVKRMPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANT AFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARV ELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSR RMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPL NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSAS PDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREVARKV ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTL NCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD FPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL HERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELK QAIRNVTIKRCQIIYGGSTYDLESDGKGKVSVEKVKNTSVQTNNELAGALHHLKHARI RYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSED DEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR KRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS THVIPAGITEVFGVPIKQIQIHKSGEFCRFRFPKPIRTDVTGMILEEGAPEGTVATVL IKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI YKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPK LSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR PSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFT GKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRC ARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRA VLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKP TRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPN ETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPNFVNEDGVE" gene 5064..6692 /gene="VP1" CDS 5064..6692 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="BDQ32387.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6692..7471 /gene="VP2" CDS 6692..7471 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="BDQ32388.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTAPLRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GSSHGTASSNSTRSTSLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA" ORIGIN 1 cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaagaaaaat cttcaggtga 61 aggcttattc acaaatatgt cttccacctt aaagaaagcc ctcggggcta ggcccaaaca 121 gcctgccccg agagacaaac cacaaaagcc cccaagacca ccaactcccg agttggttaa 181 gaggatgccc cctcctccac ctaacggcga agaagaagaa gaaccagtca ttaggtatga 241 ggtcaagagt gggatctctg gcctgcccga gctcacaaca gtcccccaac cggacgtggc 301 caacacagca ttcagtgttc caccactgag cttgagagaa aacagggagg ccaaggagcc 361 gctaacaggg gcaatattag agatgtggga tggagagata taccactatg gcctgtacgt 421 ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca tggcaagagt 481 ggagctgacg ccgttgtcat tgtactggcg tgtggtgtac actccccaat acctcatctc 541 ccctgaaacc ctcaggaggc tcaacggaga ggcattccct tacaccgcct ttgacaacaa 601 ctgctatgcc ttttgctgct gggtgttaga cctcaatgac tcatggctta gcaggaggat 661 gatacaaagg acaacgggct tcttcagacc ttaccaagag tggaacagaa aacccctgcc 721 taccatggat gactccaaaa ttaagaaggt agcaaatata ttcctatgtt cattgtccac 781 attattcacc agacccataa aagacctcat aggaaaaatc aaaccattga acatattgaa 841 tatcctggca acgtgtgact ggacttttgc cggaatagtg gagtctctga tattacttgc 901 tgaactcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg ctcccttact 961 cggtgactac gagttgcaag ggccagaaga cctcgccgtt gaactcgtgc ctgtggtaat 1021 gggggggatt ggtttggtgc tgggattcac caaagagaaa attggcaaaa tgttgtcctc 1081 agcagcatca acactcaggg cttgcaaaga tcttggtgcc tatggcttgg agatactcaa 1141 attggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagctag ctatggtgag 1201 ggccatagag gatgctgtat tagaccttga ggcaatagaa aataaccaca tgacaaccct 1261 gttgaaagac aaagacagct tagcaacata catgaaaaca ctggacatgg aggaggagaa 1321 agccaggagg ttgtccacaa aatctgcatc ccctgacata gttgggacaa tcaacgctct 1381 gctggctcga atagcagcgg ccaggtcatt agtccacagg gccaaggaag agctatctag 1441 taggatgagg ccagtagttg ttatgatatc tggcaagcca ggaataggca aaactcatct 1501 ggccagggag gtggcaagaa aggtggcatc cactctcaca ggagatcaaa gagtcggact 1561 cataccacga aacggtgtgg accattggga tgcatacaaa ggtgagagag tcgtgctgtg 1621 ggacgactat ggcatgagta accctattca tgatgctctt cgcatacaag aattggctga 1681 tacgtgcccc ctcaccttaa attgtgacag aattgaaaat aaggggaaag tttttgacag 1741 tgaagtcata ataattacaa caaaccttgc caatccagcc ccacttgatt atgtcaactt 1801 tgaggcctgt tccaggagaa ttgattttct ggtgtacgct gaggcaccag aagtagaaaa 1861 ggcaaaacgg gactttcctg gtcagccaga tatgtggaag gacgccttca agccggactt 1921 ttcacacatc aagctacagc ttgcacccca gggcggcttc gacaagaatg gcaacacccc 1981 acatgggaaa ggagtgatga agaccctcac taccggttct ctgattgccc gtgcatcagg 2041 cttactgcat gagaggatgg atgaatttga actccaaggc cccacaatca ccacctttaa 2101 tttcgaccga aacagaatca cggcattcag acaattggct gcagaaaaca aatatggatt 2161 ggtggatacc atgaaagttg gcaatcaatt aaaaggagtg aaaaccatgg aagaactcaa 2221 acaagcaatc aggaatgtga ccatcaagag gtgccagatc atctatggtg gttccacgta 2281 tgaccttgaa tctgatggca agggcaaagt ttcggtggaa aaggtcaaga acacctctgt 2341 acagaccaat aacgagttgg ctggggccct gcaccatctc aaacatgccc gaatcaggta 2401 ctatgtcaaa tgtgtgcaag aagcagtcta ttccatcata caaattgccg gcgctgcgtt 2461 tgtcaccaca cgcatcgcac gccgtatgaa catacaagaa ctctggtcga agccacaatt 2521 agatcaaaat gaatcagaga ctaaggagga ggcccccaag tcagaagatg acgagttcat 2581 catatcttct aaggacatca aggaggaagg gaagaagggc aaaaacaaaa ctggccgtgg 2641 caagaaacac actgcattct ccagcaaggg cctgagcgat gaggagtatg atgagtacaa 2701 gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc aagacagaga 2761 caggtactat gaggagctcg ccattgccaa ggccacggaa gaagacttct gtgaagagga 2821 ggagatcaaa atccgtcaga gaattttccg ccccaccagg aaacaaagaa aggaagagag 2881 ggccacatta gggctagtaa caggttcaga aatcagaaaa agaaaccctg atgacttcaa 2941 acccaaaggg aagctgtggg ccgatgacaa caggagcgtt gactacaatg agaaactaga 3001 ctttgaggcc cccccaagca tatggtctag gattgtgagc tttggctctg gctggggctt 3061 ctgggtgtca ccaagccttt tcataacatc aactcatgta atccccgcag gcataacaga 3121 agtatttgga gtccccatca aacaaattca gatccacaaa tcaggcgaat tttgccgatt 3181 cagattccca aaaccaatca gaacagatgt gacaggaatg atcttggaag aaggtgcgcc 3241 tgagggcacc gtggcaaccg tgctcatcaa gcgccccacc ggagagctca tgcctcttgc 3301 agccagaatg ggaacacacg caaccatgaa aattcaaggc cgcatggttg gcggacagat 3361 gggtatgttg ctcactggat caaatgctaa aggaatggac ttgggaacaa ctcctggtga 3421 ctgtggctgt ccttacatct ataaaagggg caatgactat atagtcattg gggtgcacac 3481 tgcagcagcc cgtggtggaa acactgtcat ctgtgccaca cagggaagtg agggtgaggc 3541 aactcttgag ggtggagatg acaaaggaac gtactgtggg gcacccattc taggccctgg 3601 gggtgcacca aaattgagca ccaaaaccaa attttggagg tcatcgaaca cgccccttcc 3661 accagggaca tatgagcctg cctacctcgg tggccgtgat ccgcgtgtta agggtgggcc 3721 ttccctgcag caggtgatga gagaccagtt gaagccattt actgaaccca ggggcaaacc 3781 tccaagacca agtgtattgg aagcagccaa acaaaccatc atcaatgtcc tcgaacaaac 3841 cctggaccct ccacaaaaat ggacgtacgc acaggcgtgc gcctcacttg acaaaaccac 3901 ctccagcggg cacccccatc acgtccgaaa gaatgaattc tggaatggtg agaccttcac 3961 tggtaaactg gcagaccaag catcaaaagc aaacctaatg tttgaggaag ggaaacacat 4021 gacaccagtg tacacagcag cactcaagga cgagctagtc aagactgaga aaatttatgg 4081 aaagatcaag aagagactgc tctggggctc tgacttgtcc accatgatcc ggtgcgctag 4141 gtcatttggt gggcttatgg acgagatgaa ggcacactgc atatcactcc cagtccgagt 4201 tggcatgaat atgaatgaag atggcccaat aatatttgag aaacattcca gatataaata 4261 tcactatgat gcagactact ctcgttggga ttcaacacaa cagagggcag ttctagcagc 4321 agccttggaa atcatggtca gattctctgc cgaaccacaa ttggcacaaa tagtcgctga 4381 ggatctgctg gcccccagtg tggtagatgt aggagatttt aaaatcacaa taaatgaagg 4441 gctcccttct ggtgtgccat gcacttctca atggaactcc atcgcacact ggttgctaac 4501 tctctgtgcc ttgtctgaag tcaccaaact atcccctgac attatacagg caaattccat 4561 gttctcattt tacggtgatg acgagattgt cagtaccgac ataaaattgg accctgaaca 4621 gttaaccgcc aaattgaagg agtacggcct gaaaccaacc cgcccagaca aaaccgaggg 4681 acccctgatt atcagtgaag atttgaacgg tctcactttc ctccgaagga cggtgactcg 4741 tgacccagct ggctggtttg gaaaactgga ccaaagctca attttgaggc agatgtactg 4801 gactagagga ccaaatcatg aagaccccaa tgagacaatg ataccccatt cccaaagacc 4861 catacagctc atggcactgc ttggtgaagc ctctcttcac ggaccctctt tctacagtaa 4921 aatcagtaaa ttggttataa ctgaactcaa agaaggtggg atggactttt acgtgccaag 4981 gcaggagccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg agggcgatcg 5041 caatctggct cccaattttg tgaatgaaga tggcgtcgaa tgacgccgct ccatctactg 5101 atggtgcagc cggcctcgtg ccagaaagta acaatgaggt catggctctt gaacccgtgg 5161 ctggtgccgc cttggcagcc ccggtcaccg gtcaaacaaa tattatagac ccttggatta 5221 gagcaaactt tgtccaggcc cccaatggtg aattcacagt ctctccccga aatgcccctg 5281 gtgaagtgct actgaatcta gagttgggtc cagaattaaa tccttatctg gcacatttag 5341 caagaatgta caatgggtat gccggtggga tggaggtgca ggtcatgttg gctgggaacg 5401 cgttcacagc cggcaagttg gtcttcgccg ccgtgccacc ccacttcccg gttgaaaacc 5461 ttagcccaca gcaaattacc atgttccctc atgtgatcat agatgttaga accttggaac 5521 ctgttttact accactccct gatgttagga ataacttttt ccattataac cagaaagatg 5581 atcccaagat gagaattgtg gctatgctat atacccccct caggtctaat ggttcaggtg 5641 atgatgtgtt tacagtctcc tgtagagtgt tgactagacc ttcccctgac tttgacttca 5701 catacctggt gccaccaaca gtggagtcta aaacaaagcc attcaccctc ccaatcctca 5761 cacttgggga actttccaac tctaggttcc cagtgtccat agaccagatg tacaccagcc 5821 ctaatgaaat tatatcagtg cagtgtcaaa atggtaggtg cacactggac ggggagctcc 5881 aagggacaac acaactccaa gtcagtggca tttgtgcttt caaaggtgaa gtgaccgccc 5941 acttgcatga caatgatcac ctatataatg tcactatcac aaacttgaat gggtcccctt 6001 ttgatccctc cgaggatatc cctgcccctt tgggtgtacc tgacttccag ggaagggttt 6061 ttggtatcat ctcccaaaga gacaaacaca atagtcctgg acataatgaa ccagcaaaca 6121 ggggacacga tgctgtggtc cctacttaca ctgcacagta cactccaaaa cttggacaaa 6181 ttcaaattgg cacatggcaa actgacgacc ttacagtcaa ccaaccagtc aaattcaccc 6241 cagttgggct caatgacact gaacacttta accaatgggt tgtccctagg tatgctggtg 6301 ccctaaacct caacacaaac cttgcccctt ctgttgctcc agtatttcca ggagagcgct 6361 tgctcttctt cagatcatac attcccctca agggcggtta tggaaaccca gccattgatt 6421 gcctactacc acaagagtgg gtgcagcact tctatcagga agcagcccct tcaatgagtg 6481 aggtggccct cgtcagatac atcaacccgg acactggtcg ggcactgttt gaggccaagc 6541 tccacagagc tggtttcatg acagtctcga gcaacaccag tgccccggtg gttgtgcctg 6601 ccaacgggta cttcagattt gattcttggg tgaaccaatt ttattctctc gcccccatgg 6661 gaactgggaa tgggcgtaga agggttcaat aatggctgga gcttttgtag ctggtcttgc 6721 aggggacgtg ctcagcaatg ggcttagttc attaatcaat gcaggtgcta atgcaataaa 6781 tcagagggca gaatttgatt ttaatcaaaa attgcagcaa aattctttta atcatgataa 6841 ggagatgttg caggctcaga ttcaggcaac taagcagctg caggcagaca tgatggctat 6901 aaaacaaggg gtcttgaccg ctggcggctt ttcccctgct gatgcagcca gaggtgccgt 6961 gaacgcgccc atgacacagg cgctggattg gaatggcaca aggtattggg caccaaactc 7021 catgaggacc acatcttatt ctggaaaatt cacatcaacc gccccattga ggcaggctga 7081 cttccagcac acccaaagcc ggccttcgag tggctcctct gtgtcttcct ttgccaccca 7141 gtcttcgagg ccaactctga ccacaaccac tggttcctca catggcacag cctcatcaaa 7201 ttcaactcgc agcacaagcc tctcccaatc aacggtctcc agagctacat ctaggactag 7261 tgagtgggtt agagatcaaa atagaaattt ggaaccctac atgcatggtg ccttacagac 7321 agcctttgtc accccacctt ccagcagggc atctgacggg acagtctcaa ccgtccctaa 7381 aggtgttttg gactcctgga cacctgcgtt taacacccgc aggcagccgc tttttgcaca 7441 cctccgtaag aggggggagt cacaagctta gtgaaaaggt gaa //