Typing tool
|
Complete norovirus genomes
LC726075 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5070 ORF2: 5051..6673 ORF3: 6673..7470LOCUS LC726075 7500 bp RNA linear VRL 26-AUG-2022 DEFINITION Norovirus GII.4 Hu/GII.4[P31]/1145F/Tokyo/2022/Japan POL, VP1, VP2 genes for nonstructural polyprotein, capsid protein VP1, capsid protein VP2, partial and complete cds. ACCESSION LC726075 VERSION LC726075.1 KEYWORDS . SOURCE Norovirus GII.4 ORGANISM Norovirus GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K., Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo April 2021-March 2022 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7500) AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K., Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Direct Submission JOURNAL Submitted (23-AUG-2022) Contact:Yu Yaoita Tokyo Metropolitan Institute of Public Health, Department of Microbiology; Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..7500 /organism="Norovirus GII.4" /mol_type="genomic RNA" /strain="Hu/GII.4[P31]/1145F/Tokyo/2022/Japan" /host="Homo sapiens" /db_xref="taxon:489821" /country="Japan:Tokyo" /collection_date="2022-01" gene <1..5070 /gene="POL" CDS <1..5070 /gene="POL" /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="BDQ32341.1" /translation="AAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPKQPPPRETPP RPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPP LNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAPLS LFWRPVYTPQYLVSPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRT TGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNIL ATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVM GGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAM VRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGT INSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTG DQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIE NKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPD MWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDE YELQGPTLATFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNI AIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKC VQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKGGCLKPKDDEEFV VSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQD RDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNP EDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVI PQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRP TGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRG NDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTK TKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVL EAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLA DQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMVRCARAF GGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAA ALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWL LTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPD KTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQGSILRQMYWTRGPNHEDPFETMI PHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSD LSTWEGDRNLAPSFVNEDGVE" gene 5051..6673 /gene="VP1" CDS 5051..6673 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="BDQ32342.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGGVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6673..7470 /gene="VP2" CDS 6673..7470 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="BDQ32343.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGAMLGRRDAVPARGSSSKSSNSS TATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNISFV TPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gccgctgttg ccaacagcaa caacgacatc gcaaaatctt caagtgacgg tatgttttct 61 aacatggctg tcacttttaa gcgggccctc ggggcgcggc ctaaacagcc gcccccgagg 121 gaaacaccac ccaggccccc gcgaccaccc acgccagaat tggtcaaaaa gatccctcct 181 cccccaccca acggggagga tgaactagtg gtctcttaca acgccaaaga tggcgtttcc 241 ggactgcctg agctcaccac tgtcagacaa ccggaagaaa ccaacacggc gttcagtgtc 301 cccccactca accaaaggga gagcagggac gccaaggagc cactaactgg aacaatcatt 361 gaaatgtggg atggagaaat ctaccattac ggcctgtacg tggaacgagg tcttgtactt 421 ggtgtgcaca agccaccagc agccatcagc ctcgctaagg tcgagctggc accgctctct 481 ttgttctgga ggcctgtata caccccccag tacctcgtct ctccagacac tcttaggaga 541 ttacatggag agtcattccc ctacactgct tttgacaaca attgctacgc cttttgttgt 601 tgggtgttag acctaaacga ctcatggcta agcaggagaa tgattcagag aacaacaggc 661 ttcttcaggc cgtaccagga ttggaacagg aaacccctcc ccactatgga tgactccaaa 721 ttaaagaagg tagccaacat attcttgtgc actttgtctt cactattcac caggcccatc 781 aaggacataa tagggaagtt gaaacctctc aacatcctta atatcctggc tacatgtgat 841 tggaccttcg caggcatagt ggaatcctta atactcttgg cagaactctt tggagttttc 901 tggacacccc cagatgtgtc tgcgatgatc gcccccttgc ttggtgatta tgaactgcaa 961 ggacccgagg accttgcagt ggaactggtc ccagtagtga tgggggggat aggtttggtg 1021 ctaggattta ccaaagagaa gatcggtaaa atgttgtcat ccgctgcatc cactttaaga 1081 gcttgtaaag accttggtgc atacggactg gaaatcttaa aattggtcat gaagtggttc 1141 ttcccaaaga aagaggaagc aaatgaactg gccatggtga gatccatcga ggatgcagta 1201 ctagacctcg aggcaattga aaacaaccac atgaccaccc tgctcaaaga caaagacagc 1261 ttgacaacct acatgagaac ccttgacctt gaggaggaga aagccagaaa actctcaacc 1321 aaatctgctt cacccgatat tgtgggcaca atcaactctc ttctggcaag aatcgctgct 1381 gcacgctccc tagtgcatcg ggcgaaagaa gagctctcca gcaggccgag acctgtcgtt 1441 gtaatgatat cgggaagacc aggaataggg aaaactcacc ttgccaggga gctggccaag 1501 aagatcgcgg cctccctcac aggggaccag cgtgtgggcc ttatcccacg caatggtgtc 1561 gaccactggg acgcatacaa gggcgaaagg gttgtcctat gggacgacta tggaatgagc 1621 aaccccatcc atgatgccct taggttgcag gagcttgctg acacttgccc cctcacgcta 1681 aattgtgaca gaattgagaa caaaggaaaa gtctttgata gtgatgccat aattatcacc 1741 accaacctgg ccaacccagc accactagat tatgtcaatt ttgaagcgtg ctcgagacgc 1801 attgatttcc tcgtgtacgc agaagcccct gaggtggaga aggcaaagcg cgacttccca 1861 ggtcaacctg acatgtggaa gaacgctttc agtcctgact tctcacacat aaaactgaca 1921 ttggctccac agggtggttt tgataagaac ggcaacaccc cgcatggaaa aggggtcatg 1981 aagaccctca ccactggctc cctcatcgcc cgagcatcag ggttactcca tgagaggcta 2041 gatgaatatg aattgcaagg cccaaccctc gccactttca actttgaccg caacaagata 2101 ctcgctttta gacagcttgc tgctgaaaac aagtatgggc tgatggacac aatgagagtt 2161 ggaaaacagc tcaaggatgt caagactatg tcagacctca aacaagcact caagaacatc 2221 gcgatcaaga agtgccagat agtgtacaat ggtggcacct acacacttga ggctgatggc 2281 aagggcagtg tgaaagttga taaagtgcag agtgctactg tgcagaccaa caatgaacta 2341 gccggtgccc tacaccacct aagatgcgct agaatcagat actatgttaa gtgcgtccag 2401 gaggcactgt attccatcat ccaaatcgct ggggctgcat tcgtcacaac gcgcatcgct 2461 aagcgcatga atatacagaa tctctggtcc aagccgcagg tggaagacac agaagagatg 2521 gccaacaaag gtggttgcct aaaacccaaa gatgatgaag agtttgtcgt ttcatccgac 2581 gacatcaaga ctgagggcaa gaaagggaag aacaagtccg gccgtggcaa gaagcacaca 2641 gccttttcaa gtaaagggct cagtgatgag gagtacgatg agtacaagag aatcagagaa 2701 gaaaggaatg gtaagtactc catagaagag taccttcagg acagagacag gtactacgag 2761 gaggtggcca ttgccagggc aaccgaagag gacttctgtg aagaagaaga ggccaaaatc 2821 cggcagagga ttttcagacc aacaaggaaa caacgcaaag aagagagggc ttctcttggc 2881 ttggtcacgg gttctgaaat caggaagaga aacccagaag acttcaaacc caagggaaag 2941 ctgtgggctg atgacgacag aagtgttgac tacaatgaaa aactcaactt tgaggccccg 3001 ccaagcatct ggtcgcggat agtcaacttt ggttcaggct ggggcttctg ggtctccccc 3061 agtctgttta taacatcaac ccatgtcata ccccaaggtg caaaggagtt cttcggagtc 3121 cctatcaagc aaatccagat acacaagtca ggtgaattct gccgattgag atttccaaag 3181 ccaatcagaa ccgatgtgac gggcatgatt ctagaagaag gtgcgcccga ggggaccgtg 3241 gccacactgc ttatcaagag accaactgga gagctcatgc ctctggcagc cagaatgggg 3301 acccatgcaa ccatgaaaat ccaggggcgc acagttggag ggcaaatggg tatgctcctg 3361 acaggatcta acgccaagag tatggacttg ggcacaacac caggcgactg cggctgcccc 3421 tacatctaca agagggggaa tgactacgtg gtcatagggg tccatacggc tgctgcccgt 3481 ggaggaaaca ctgtcatatg tgccacccag gggagtgagg gagaggccac acttgaagga 3541 ggtgacagca aagggacata ctgtggcgcg ccaatcttag gcccagggag cgctccgaag 3601 ctcagcacta agactaagtt ttggagatca tccacaacgc cactcccacc tggcacctac 3661 gaaccagcct acctcggtgg caaagacccc agagtcaaag gtggcccttc attgcaacaa 3721 gttatgaggg accaactgaa gccattcaca gaacccagag gaaaaccacc aagaccaaac 3781 gtgttggaag ctgccaagaa aaccatcatc aatgtccttg agcaaacaat tgatccaccc 3841 caaaaatggt catttgcgca agcttgcgca tcccttgaca aaaccacctc cagcggccac 3901 ccgcaccaca tgcggaaaaa cgactgttgg aatggggagt ccttcacagg aaagttggct 3961 gaccaagcct ccaaggccaa cctaatgttt gaagagggaa agaacatgac tccagtctac 4021 acaggtgcac ttaaagatga gttggtgaag accgataaag tgtatggtaa ggtcaagaag 4081 aggcttttat ggggttcaga tctggcgacc atggtacggt gcgcccgagc ttttggaggc 4141 ctcatggatg aactcaaggc acactgtgtc acactccctg tcagagttgg tatgaacatg 4201 aatgaggatg gccccatcat cttcgagaag cactccaggt atagatatca ttatgatgct 4261 gactattccc ggtgggactc aacacaacaa agggatgtgc tggcagcagc actagagatc 4321 atggttaagt tctctccaga accacacctg gcccagatag ttgcagaaga cctcctctcc 4381 cctagcgtga tggatgtggg tgactttcaa atatcaataa gtgagggtct cccctctggg 4441 gtaccttgca cctcccagtg gaattccatc gcccactggc tcctcactct gtgtgcactc 4501 tctgaagtca cggacctgtc ccctgatatc attcaggcta actccctttt ctccttctat 4561 ggtgatgatg agattgtaag cacagatata aagttggacc cagagaggct aacagcaaag 4621 ctcaaggagt acgggctgaa accaacccgc cccgacaaga ctgaaggacc ccttgtcatc 4681 tctgaagacc tggatggtct gacattcctc cggagaactg taacccgtga tccagctggc 4741 tggtttggaa aattggaaca aggttcaatt cttaggcaga tgtactggac caggggcccc 4801 aaccacgaag acccatttga aacaatgata ccacactccc aaagaccaat acaattgatg 4861 tccttgctgg gcgaggctgc actccacggc ccggcattct acagcaaaat tagcaaatta 4921 gtcattgcag agttgaagga aggtggcatg gatttttacg tgcccagaca agagccaatg 4981 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc 5041 agttttgtga atgaagatgg cgtcgagtga cgtcaaccca tctgatgggt ccgcagccaa 5101 cctcgtccca gaggtcaaca atgaggttat ggctctggag cccgttgttg gtgccgccat 5161 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt 5221 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg 5281 gagcgcgccc ttgggccctg atctaaaccc ctacttgtct catttggcca gaatgtacaa 5341 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg 5401 gaaggtcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca 5461 ggtcactatg ttcccccata tagtagtaga tgtcaggcaa ttagaacctg tgttgattcc 5521 cttacccgat gttaggaata atttctatca ttacaatcaa tcaaatgacc ccaccattaa 5581 gttgatagca atgttgtata caccacttag ggctaataat gctggggacg atgtcttcac 5641 ggtttcttgt cgagttctca cgagaccatc ccccgatttt gacttcatat ttctagtgcc 5701 acccacagtt gagtcaagaa ctaaaccatt ctctgtccca gttctgactg ttgaggagat 5761 gaccaattca agattcccca tccctttgga aaagttgttc acgggtccca gcagcgcctt 5821 tgttgtccaa ccacaaaatg gtaggtgcac gactgatggc gtgctcctag gcaccaccca 5881 actgtctcct gtcaacatct gcacctttag aggaggtgtc acacatatca caggcagtca 5941 taactataca atgaatttgg cttctcaaaa ttggagcaac tatgacccaa cagaagaaat 6001 cccagcccct ctaggtactc cagactttgt ggggaagata caaggcatgc tcacccaaac 6061 cacaaggaca gatggctcaa cacgcggcca caaagccaca gtgtacactg ggagcgccga 6121 ctttgctcca aaactgggta gggtccaatt tgaaactgac acaaacaatg attttgaggc 6181 taaccaaaac acaaagttca ccccagttgg tgtcatccaa gatggtggca ccactcatcg 6241 aaatgaaccc caacagtggg tgctcccaag ttactcaggc aggaacactc ctaatgtgca 6301 tctggccccc gctgtggccc ccacttttcc aggtgagcaa ctccttttct ttagatccac 6361 catgcccgga tgcagcgggt accccaacat ggatttggat tgtttgctcc cccaggaatg 6421 ggtgcagtac ttctaccagg aggcagcccc agcacaatct gatgtggctc tgctaagatt 6481 tgtgaatcca gacacaggta gggttttgtt tgaatgtaag cttcataaat caggttatgt 6541 tacagtggct cacactggcc aacatgattt ggttatcccc cccaacggtt attttaggtt 6601 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggag cggggcgtag 6661 acgtgcacta taatggctgg agctttcttt gctggattgg catctgatgt tcttggctct 6721 ggacttggtt cccttatcaa tgctggggct ggggccatca accaaaaagt tgagtttgaa 6781 aataatagaa aattgcagca agcatccttc caatttagca gcaatctaca acaggcttcc 6841 tttcaacatg ataaagagat gcttcaagca caaattgagg ctaccaaaag gttacaacag 6901 gaaatgatga aagttaagca ggcaatgctc ctagaaggtg gattctctga gacagatgca 6961 gcccgcgggg caatcaacgc ccctatgaca aaagccttgg actggagcgg gacaaggtac 7021 tgggctcctg atgctaggac tacaacatac aatgcaggcc gcttctccac cccccaacca 7081 tcgggggcga tgctaggaag aagggatgct gtccctgctc ggggttcctc tagtaagtct 7141 tctaattctt ctactgcaac ttctgtgtat tcaaatcaaa caatttcaac gagacttggt 7201 tctacagctg gttctggtac cagtgtctcg agcttcccgt caactgcaag gactaggagc 7261 tgggttgagg accaaagtag gaatttgtca cctttcatga ggggggccca caacatatcg 7321 tttgtcaccc caccatctag caggtcctct agccaaggca cagtctcaac cgtgcctaaa 7381 gaggttttgg actcctggac tggcgctttc aacacgcgca ggcagccact cttcgctcac 7441 attcgtaagc gaggggagtc acgggtgtaa tgtgaaaagg caaaattgat tatctttctt //