Typing tool
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Typing tool
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Complete norovirus genomes
| LC726063 | GII.3 | |
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| GII.P12 |
ORF1: 1..5077
ORF2: 5058..6704
ORF3: 6704..7468
LOCUS LC726063 7498 bp RNA linear VRL 26-AUG-2022
DEFINITION Norovirus GI.6 Hu/GII.3[P12]/1152/Tokyo/2022/Japan POL, VP1, VP2
genes for nonstructural polyprotein, capsid protein VP1, capsid
protein VP2, partial and complete cds.
ACCESSION LC726063
VERSION LC726063.1
KEYWORDS .
SOURCE Norovirus GI.6
ORGANISM Norovirus GI.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Suzuki,J. and Sadamasu,K.
TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo April
2021-March 2022
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7498)
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H.,
Nagashima,M., Suzuki,J. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2022) Contact:Yu Yaoita Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7498
/organism="Norovirus GI.6"
/mol_type="genomic RNA"
/strain="Hu/GII.3[P12]/1152/Tokyo/2022/Japan"
/host="Homo sapiens"
/db_xref="taxon:647520"
/country="Japan:Tokyo"
/collection_date="2022-01"
gene <1..5077
/gene="POL"
CDS <1..5077
/gene="POL"
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BDQ32314.1"
/translation="SDAAVANSNNDNAKSSSDGVLSSMAVTFKRALGARQKQPPPREL
PQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVCQPDETNTAFSV
PPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAP
LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQ
RTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILN
ILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV
GTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL
DEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMPELKQALK
NVAIKNCQIVYGGCTYRLESDGKGDVKVDRVQNTTVQTNNELAGALHHLRCARIRYYV
KCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQDDEE
FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR
NPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIK
RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLS
TKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPS
VLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK
LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDLATMIRCAR
AFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVL
AAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR
PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSET
MIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
gene 5058..6704
/gene="VP1"
CDS 5058..6704
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BDQ32315.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6704..7468
/gene="VP2"
CDS 6704..7468
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDQ32316.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLPTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKDVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 ttccgatgcc gctgttgcta atagcaacaa cgacaacgca aaatcttcaa gtgacggagt
61 gctttctagc atggctgtca cttttaaacg agccctcggg gcgcggcaaa aacagcctcc
121 cccgagggaa ctaccacaaa ggcctccacg gccacccacc ccagaactgg tcaaaaagat
181 ccctcctccc ccacccaatg gggaggatga actagtggtc tcttatagtg ccaaagatgg
241 cgtttctggt ttgcctgaac tcaccactgt ctgtcaaccg gatgagacca acacggcgtt
301 cagtgttccc cctctcaacc agagggagaa cagggacgcc aaggagccgc tgaccggaac
361 tatcctggaa atgtgggacg gggagatcta tcattatggt ctgtacgtgg agcgaggcct
421 tgtactcggt gtgcacaaac caccagctgc catcagtctc gccaaggttg aattagcacc
481 actctctctg ttttggaggc cagtgtacac accacagtat ctcatctctc cagacactct
541 taggagactg catggagagt cgttccccta cacagccttt gataacaact gctatgcctt
601 ctgttgttgg gttttggacc taaacgactc gtggttgtgc aggagaatga tccagagaac
661 aactggcttt ttccgacctt accaagaatg gaacaggaaa cccctcccca ctatggatga
721 ctctaaattg aagaaggtag ccaacatatt cttgtgtgcg ctatcttcgc tattcactag
781 gcccatcaaa gacataatag gaaaagtgag accgctcaac atccttaaca tcctggcctc
841 atgtgattgg acttttgcag gcatagtgga atctttaatc ctcttggcag agctctttgg
901 agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttactag gtgactacga
961 actgcagggg cctgaggacc ttgcagtaga actcgtacca gtagtgatgg gagggattgg
1021 tttggtgtta ggattcacca aagagaagat cggaaaaatg ttgtcgtccg ctgcttccac
1081 cttaagagct tgtaaagacc ttggtgcata cgggctggaa atcctaaaat tggtcatgaa
1141 atggttcttc ccaaagaaag aggaagcaaa tgagctagct atggtgaggt ccatcgagga
1201 tgcggtactg gacctcgaag caattgagaa caaccacatg actgccctcc tcaaagacaa
1261 agacagcctg gcaacctaca tgagaaccct tgacctcgag gaggagaaag ccaggaagct
1321 ttcaaccaag tctgcttcac ctgacatcgt gggcacgatt aacgctcttc tggcgagaat
1381 cgccgctgca cgttccctgg tgcatcgggc gaaagaggag ctctccagca gaccaagacc
1441 tgttgttgtt atgatatcag gtaggccagg gatagggaag actcaccttg ccagggagct
1501 ggccaagaag atcgcagctt cactcacagg ggaccagcgc gtgggtctca tcccccgcaa
1561 tggcgttgac cactgggatg cgtacaaggg agaaagagtc gtcctatggg acgattatgg
1621 aatgagcaat cccatccacg atgccctcag gttacaggaa cttgctgaca cctgccccct
1681 tacgctaaac tgtgacagga ttgagaacaa aggaaaggtc tttgatagcg atgccataat
1741 catcaccact aatctagcca acccagcacc attggactat gtcaactttg aagcatgctc
1801 gaggcgcatt gacttcctcg tgtacgcaga agcccctgag gtcgagaaag caaagcgtga
1861 tttcccaggt caacctgata tgtggaagaa cgcatttagc tctgacttct cgcacataaa
1921 actggcgctg gctccgcagg gtggcttcga caagaacgga aacaccccac acgggaaagg
1981 cgtcatgaaa accctcacca ctggttccct catcgcccga gcatcagggc tactccatga
2041 gaggttggat gagtacgagc tgcagggccc aactcccacc acctttaatt ttgaccgcaa
2101 caaggtgctt gcgttcagac aacttgctgc cgaaaacaag tatggattgt tggacacaat
2161 gagagtcgga aaacagctca aggatgttaa gaccatgcca gagctcaaac aagcactcaa
2221 gaatgtcgca atcaagaatt gtcagatagt gtatggtggc tgcacctaca gacttgagtc
2281 tgatggcaag ggtgatgtaa aagttgacag agttcagaac accactgtac agaccaacaa
2341 tgagcttgcc ggcgcactac accatcttag gtgcgccaga atcaggtatt atgtcaagtg
2401 tgttcaggag gccctgtatt ccatcatcca aatcgctggg gctgcatttg ttaccacacg
2461 cattgtcaag cgcatgaaca tacaagatct ttggtccaag ccacaggtgg aggacacaga
2521 ggaaatcgct agcaaggatg ggtgcccaaa accccaggat gatgaagagt ttgtcgtctc
2581 atccgatgac atcaaaaccg agggcaagaa agggaagaac aagtctggcc gtggcaagaa
2641 gcacacagcg ttttcaagca aaggtctcag tgatgaagag tacgatgagt acaaaagaat
2701 tagagaagaa agaaatggca aatactccat agaggaatac ctccaggaca gagacaggta
2761 ttatgaggag gtggccatcg ccagggcaac cgaagaggac ttctgtgaag aagaagaggc
2821 caagatccga cagaggatct tcaggccaac aaggaaacaa cgcaaagagg agagagcctc
2881 tctcggttta gtcacaggtt ctgaaatcag gaagaggaac ccagatgact tcaagcctaa
2941 aggaaagctg tgggctgatg atgacaggag tgttgactac aatgagaaac tcaactttga
3001 agccccacca agcatctggt cgaggatagt caactttggc tcaggttggg gcttttgggt
3061 ctcccctagc ctgtttataa catcaactca tgtcataccc cagggcgcac aggagttctt
3121 tggtgtatcc atcaaacaaa tccagataca taaatcaggt gaattctgcc gcttgaggtt
3181 tccaaagccg atcagaactg acgtgacagg catgatctta gaagaaggtg cacccgaagg
3241 aaccgtggtc acattactca tcaaaagacc aactggagag ctcatgcccc tggcagccag
3301 aatgggtacc cacgcaacca tgaagataca agggcgcact gttggaggtc aaatgggcat
3361 gcttctgaca ggatccaacg ccaagagtat ggacctgggc accacaccag gtgactgtgg
3421 ctgcccctac atttacaaga gggggaatga ctacgtggtc attggggtcc atacagctgc
3481 cgcccgcgga ggaaacactg tcatttgtgc cacccagggg agcgagggag aagccacact
3541 tgaaggcggt gatagcaagg ggacctactg cggagcacca atcttaggtc caggaagtgc
3601 cccaaaactc agcaccaaga ctaagttctg gagatcatcc acggcaccac tcccacctgg
3661 tacctatgaa ccagcttacc tcggtggcaa ggaccccaga gttaagggtg gcccttcact
3721 gcaacaagtt atgagggatc aactgaaacc attcactgag cctaggggta ggccaccaaa
3781 accaagtgtg ctagaagctg ccaagaaaac catcgtcaat gtcctagaac agacaattga
3841 cccacctcaa aaatggtcgt ttgcgcaggc atgcgcatcc ctagacaaga ccacttctag
3901 cggccatccg caccatatgc ggaagaatga ctgctggaac ggggagtcct tcacaggaaa
3961 attggcagac caggcttcca aggccaacct gatgtttgag gagggaaaga acatgacccc
4021 agtttacaca ggtgcgctta aggacgagct ggtcaagact gacaaagttt atggtaagat
4081 caaaaagagg cttctctggg gttcggacct ggcgaccatg attcggtgcg ctcgagcatt
4141 cgggggtctg atggaggaac tcaaagcaca ttgtgtcaca ctacctgtta gggtgggtat
4201 gaatatgaat gaggatggcc ctatcatctt tgagagacac tccagataca aataccatta
4261 tgatgctgac tactcccggt gggattcaac acaacaaaga gccgtgttgg cagcagcctt
4321 agaaatcatg gtcaagtttt ccccagagcc acacctggcc caaaaggttg cagaagacct
4381 tctttctccc agcgtgatgg acgtgggtga tttcaaaata tcaatcaatg agggtctccc
4441 ctccggagtg ccctgcacct cccaatggaa ttccatcgcc cactggctcc ttactctctg
4501 tgcactttct gaggttacaa acctgtcccc tgacattatt caggctaatt ctctcttttc
4561 tttctacggt gatgatgaaa ttgtgagcac agacataaaa ttggacccag aaaaactgac
4621 agcaaaactc aaggaatacg ggttgaaacc gacccgccct gacaaaactg aagggcctct
4681 tgtcatttcc gaagacctaa atggcctaac cttcctgcgg aggaccgtga ctcgcgaccc
4741 agcaggctgg tttggaaagt tggaacagag ctcaatactt agacaaatgt actggactag
4801 gggccccaac catgaagatc catctgaaac aatgatacca cactcccaga ggcccataca
4861 attgatgtct ttgctgggtg aggcagcact ccacggccca tcattctaca gcaaaatcag
4921 taaactggtc attgcagagt tgaaggaggg tggtatggat ttttacgtgc caaggcaaga
4981 gccgatgttc agatggatga gattctcgga tctgagcacg tgggagggcg atcgcaatct
5041 ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc caccccatct aatgatggtg
5101 ccgccggcct cgtcccagag atcaacaatg aggcaatggc gctagatcca gtggcgggtg
5161 cagcgatagc agcacccctc accggccagc aaaatataat tgatccctgg attatgaata
5221 attttgtgca agcacctggt ggtgagttca cagtgtctcc taggaattcc cctggtgaag
5281 tgctccttaa tttggaattg ggcccagaaa taaaccccta tctggcccat cttgctagaa
5341 tgtacaatgg ttatgcaggt gggtttgaag tgcaggtagt cctggctgga aatgcgttta
5401 cagcaggaaa gataatcttt gcagctatac cccctaactt cccaattgac aatctaagtg
5461 cagcacagat cacaatgtgc ccacatgtga ttgtggatgt caggcagctg gaaccagtca
5521 accttccgat gcctgacgtt cgcaataact tcttccacta caaccaaggg tctgattcga
5581 gattgcgctt gattgcaatg ctgtatacac ctcttagggc aaataactct ggggatgatg
5641 ttttcactgt gtcttgtaga gtgctgacta gacctagtcc tgaattttca tttaacttcc
5701 ttgtgccacc cactgtggag tcaaagacaa aaccttttac cctcccgatt ctgactatct
5761 ctgaaatgtc taattctagg tttccagtgc cgattgattc tctgcacacc agcccaactg
5821 agaacattgt tgtccagtgt caaaatggac gcgtcactct tgatggcgag ctgatgggca
5881 ccactcagct cctacctagt caaatttgtg ctttcagggg cgtgctcact aggtcaacaa
5941 gcagggctag tgaccaggcc gacacagcaa cccctagatt gtttaattat tattggcaca
6001 tacaattgga taatctaaat ggaactcctt atgatcctgc agaagacata ccaggccccc
6061 tagggacacc agattttcgg ggtaaagtct ttggcgtggc cagccaaaga aaccccgata
6121 gtacaactag agcacatgaa gcaaaggtgg acacaacagc tggtcgcttc accccaaaac
6181 taggttcatt agagatatcc actgaatctg atgactttga ccaaaaccaa ccaacaagat
6241 tcaccccagt tggcattggg gttgaccatg agtcagactt ccagcaatgg tccttacccg
6301 attactctgg tcagttcact cacaacatga acttagcccc agctgttgct cccaacttcc
6361 ctggtgagca gctccttttc ttccgctcac agttgccatc ttctggtggg cgatccaatg
6421 ggattctaga ttgcctggtc ccccaagaat gggtccagca cttctaccaa gaatcagccc
6481 ccgcccaaac ccaggtggct ctggttagat atgtcaaccc tgacactggt agagtgttgt
6541 ttgaggccaa gctgcacaaa ttaggcttta tgactatagc taagaatggt gactctccaa
6601 taactgtccc cccaaatgga tactttaggt ttgaatcttg ggtgaaccca ttttacacac
6661 ttgcccccat gggaactggg aatgggcgta gaagagttca ataatggctg gtgcttttat
6721 agcaggatta gctggtgata tattcacaaa cactgtaggg tctctagtta atgcaggggc
6781 taatgctatc aatcaaaaag ttgattttga aaataataaa tatctgcaaa atgcttcctt
6841 caatcatgat aaggaaatgt taaatgcaca aattgaggca acaaagagat tacaggctga
6901 tatgattgcc atcaaacagg gggttttgac cgctggcggc ttttccccta ctgatgcagc
6961 tcgcggggca attaacgccc ccatgacaaa agtcctagat tggaatggaa caaggtactg
7021 ggcaccaagc gccacctcta caacctcgat gtcgggtggc ttcacaaacc aggctgtgca
7081 caggaccacg ccaaatttta aaatgaacca ggcccccaga tccacaccca gcagtgggtc
7141 ttcagtgagg tcactcccaa cccaagtcac tagtctgagc tcacactcgt ccggatcgtc
7201 tcgatccagc gggtctacag ttgctagctc actaccatca tccaacagga ctagggactg
7261 ggtcaatcag caaaatttca atttggaacc acacatgcct gggtcactta ggacggcttt
7321 tgtcactcca ccatctagta cagcctctag ttcaggcact gtctcaaccg tgcccaaaga
7381 tgttttggac tcctggacat ccgcgtttaa cacgcgcaga cagccgctat tcgcacacct
7441 tcgtagaagg ggggagtcaa atgtttagtg aaaaggttat cttaaatttg atgtaaat
//