Typing tool
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Typing tool
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Complete norovirus genomes
| LC726062 | GI.6 | |
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| GI.P11 |
ORF1: 1..5340
ORF2: 5324..6946
ORF3: 6946..7575
LOCUS LC726062 7648 bp RNA linear VRL 26-AUG-2022
DEFINITION Norovirus GI.6 Hu/GI.6[P11]/1030/Tokyo/2021/Japan POL, VP1, VP2
genes for nonstructural polyprotein, capsid protein VP1, capsid
protein VP2, partial and complete cds.
ACCESSION LC726062
VERSION LC726062.1
KEYWORDS .
SOURCE Norovirus GI.6
ORGANISM Norovirus GI.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Suzuki,J. and Sadamasu,K.
TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo April
2021-March 2022
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7648)
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H.,
Nagashima,M., Suzuki,J. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2022) Contact:Yu Yaoita Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7648
/organism="Norovirus GI.6"
/mol_type="genomic RNA"
/strain="Hu/GI.6[P11]/1030/Tokyo/2021/Japan"
/host="Homo sapiens"
/db_xref="taxon:647520"
/country="Japan:Tokyo"
/collection_date="2021-12"
gene <1..5340
/gene="POL"
CDS <1..5340
/gene="POL"
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BDQ32311.1"
/translation="TTNVASNNNANNTSATSRFLSRFKGLGGGASPPNPIKIKNTEMA
LGLIGKTAQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVKSWEELDTST
KEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSVRDGVNLGVNRLTTVS
GPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSPQAAF
SVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCFEFCCQVMNL
EDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPFKNFL
GKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFHLQGP
EDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLLKKYF
FGGDQTERTLKGIETAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARKLSAK
NADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEHLA
KRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIADSAP
LTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQI
RRVSPGDTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTTINRLLIQAV
ALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLRGVTSMDGLK
NALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAASIALTRLRAA
RAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKEHKCRVHQAK
AAGKGPIGHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGRGRKNNYNAF
SRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEI
RHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYNERID
FEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASIAIHRAGEFT
LFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLV
HGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVVCAVQ
ASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGGRD
PRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSYSD
ACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYTAALK
DELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMNSIED
GPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLLAP
SEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSF
YGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTISRD
AAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLVSLLGEASLHGEKFYR
KISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
gene 5324..6946
/gene="VP1"
CDS 5324..6946
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BDQ32312.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARVLTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6946..7575
/gene="VP2"
CDS 6946..7575
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDQ32313.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 acgactaatg ttgcaagcaa taacaacgct aacaacacta gtgctacatc tcgatttttg
61 tcgagattta agggtttagg tggcggcgcg agccccccta accccataaa gatcaaaaac
121 acagaaatgg ccttgggttt gattggcaag acagcccaag aggcagtagg tgccagtgac
181 ctaccgccca aacagcaaag agatcggccc cccagaaccc aggaggaagt tcagtacggc
241 atggggtgga ctgaaaggcc cgtggaccag aatgttaagt catgggagga acttgacacc
301 tccaccaagg aagagatttt ggacagccac aaagaatggt tcgacgccgg cggtttgggc
361 ccgtgcacca tgccctcaac ttgtgaacag gccaaggatg atagcccacc tggtgaacaa
421 gtcagatggt cagtgcgtga tggagtcaac cttggagtga accgtctcac gacagtgagt
481 ggccccgagt ggaacctctg ccctctaccc cccattgacc taaggaatat ggaaccagcc
541 agtgaaccca ccattggaga catgatagag ttttatgaag gccacatcta ccactactcc
601 atatacattg ggcaagggaa gacagttggt gttcattccc cacaggcagc attctcagtg
661 gctagagtaa ccatccaacc tatagctgct tggtggaggg tttgttatat accccagccc
721 aaacacagac tgagttatga ccaacttagg gaattggaaa atgaaccctg gccatatgca
781 gctatcacca acaattgttt tgagttttgt tgtcaagtca tgaatcttga ggacacatgg
841 ttgcagaggc ggctaataac atcaggtaga ttccaccatc cttcccagtc ttggtcacaa
901 cagacccctg aatttcagca ggacagtaaa ctggagctgg ttagggatgc tatattggcc
961 gcagtgaatg gccttgtttc acaacccttc aagaacttct tgggcaagct caagcctctt
1021 aatgtattaa acatcctatc taactgtgac tggactttta tgggggtggt agagatggtt
1081 atactactcc ttgagctctt tggcgtgttc tggaacccgc ccgatgtgtc taattttata
1141 gcatctctcc tccctgactt ccacctccag ggaccagaag acctggcccg ggatttggtg
1201 ccagtcattc ttggtggcat aggactagcc attggattta ccagagataa agtcaccaag
1261 gtcatgaaga gtgctgtgga tggactccgg gccgctacac agctggggca atacgggttg
1321 gaaatattct cactcctcaa gaagtatttc tttggtgggg atcagaccga acgaaccctc
1381 aaaggcattg aaacagcagt catagacatg gaggttttgt cctccacatc agtgacacaa
1441 ttggtgagag acaagcaggc agctaaagct tacatgaaca tcctggataa tgaagaggaa
1501 aaagctagaa aactctctgc taagaatgct gacccccatg tgatatcctc aacaaatgcc
1561 ctaatatcac gtatagccat ggcgcgatcc gctctggcta aggctcaggc tgagatgacc
1621 agccgaatga ggccagttgt catcatgatg tgtggacccc ctggaattgg taagactaaa
1681 gcagcggagc acttggcaaa acgcctagct aatgagatca ggcctggcgg taaagtggga
1741 ctggtaccac gtgaggctgt tgaccactgg gatggctacc atggtgagga agtgatgcta
1801 tgggatgact atggtatgac aaagatacaa gatgactgca acaagctcca ggctattgct
1861 gactctgccc cactcactct caattgtgat aggattgaaa ataaagggat gcagtttgtg
1921 tcagatgcaa tagtcatcac caccaacgct ccagggcctg cccctgtgga ctttgtcaac
1981 cttggcccag tgtgtagacg ggttgacttc ctggtctact gttccgcccc agaggtagag
2041 cagataagga gagtcagccc tggagacacg tcggcactta aagactgctt caagtcagat
2101 ttctcccacc tgaagatgga gttagctcct caaggggggt ttgacaacca gggaaacaca
2161 ccattcggca agggtgtcat gaaaccaaca accatcaaca ggctcctcat acaagctgtg
2221 gctctcacca tggagagaca ggatgagttc cgtctccaag ggaagatgta tgattttgat
2281 gatgataggg tgtcagcctt taccaccatg gcacgcgata acggattggg catcctgagt
2341 atggcgagcc taggtaagaa gctgcgcggt gtcacatcga tggatggcct gaagaatgct
2401 ttgaaagggt ataaaattgg tgcgtgcaca atcaagtggc aggccaaggt gtattcacta
2461 gagtcagatg gcaacagtgt taacatcagg gaggagaaga atgtcttgac tcaacaacag
2521 cagtcggtgt gcgctgcctc tattgcactc acccgtctgc gggccgcacg cgcggtggcg
2581 tatgcgtcat gcatccagtc agccataacc tccatactac aaattgccgc ctctgcccta
2641 gtggtcaaca gggccgtgaa aagaatgttt ggcacacgca ctgctgcttt gtctctagag
2701 ggccccccca aagaacacaa atgcagagtt caccaggcta aagccgcagg aaaagggccc
2761 attggccatg atgacatggt tgataaatat ggcctatgcg agactgagga ggatgaagaa
2821 gtagtccaca ctgagatacc atctgccacc atggaaggta agaacaaagg aaagaacaag
2881 aaagggcgcg gccgaaagaa caactacaac gccttttccc gtagggggct caatgacgaa
2941 gagtacgagg agtacaagaa aatacgggaa gagaagggtg gaaattacag cattcaggag
3001 tacctagagg atagacaaag atatgaagag gagcttgctg aggttcaagc aggtggagat
3061 ggaggaatcg gtgaaactga aatggaaatc cgccacagag tgttctacaa gtctaagagc
3121 aagaagcacc accaggaaga acgacgccaa ctggggttag tcacaggttc tgacatccgg
3181 aaaagaaaac caattgactg gaccccccct aagtcagcat gggcagatga tgagcgtgaa
3241 gtggactaca atgagaggat cgactttgag gcgcccccca ccttgtggag ccgggtcaca
3301 aagtttggat ctgggtgggg cttctgggtc agtcccacag tcttcataac cacaacgcac
3361 gttataccaa ccagtgcaaa agagttcttt ggtgaacccc ttgccagcat agccatccat
3421 agagccggag aattcactct cttcaggttc tctaagaaaa tcaggcccga tctcacgggt
3481 atgattcttg aggaaggttg cccagagggt acggtgtgct cagtattaat aaaaagggac
3541 tccggtgagc tactaccact ggctgtaaga atgggcgcaa tagcatcaat gcgcatacag
3601 ggtcgccttg tccatggcca gtctggtatg ttgctcactg gggcgaatgc taaaggcatg
3661 gacctcggaa ctattccagg ggattgtgga gctccctatg tctataagag agcaaatgac
3721 tgggtggttt gtggtgtgca cgctgctgcc actaaatcag gcaacacggt agtgtgcgcc
3781 gtccaggcta gtgaagggga aaccacactt gaggggggtg ataaaggtca ctatgccgga
3841 catgagataa tcaagcatgg atgtgggcca gccctgtcaa ccaaaacaaa gttctggaaa
3901 tcgtcccctg aaccactgcc ccctggagtc tatgaacctg catacctcgg tggtcgggat
3961 ccaagagtga gtggtggccc ctcgcttcaa caggtattac gggatcagtt aaaaccattt
4021 gctgagccac gtgggcgtat gccggaacca ggtctcctgg aggccgcagt tgagactgtg
4081 acctcatcac tggagcaggt tatggatacc ccagtgccgt ggagttacag cgatgcatgt
4141 caatccctag ataaaactac tagctctggt tttccccatc acaagaagaa gaatgatgat
4201 tggaacggca ccgccttcat tagagagttg ggagagcagg cagcgcacgc caataacatg
4261 tacgaacaag ctaagagcat gaagcccatg tacacggcgg cgcttaagga tgaattagtg
4321 aaaccagaaa aagtgtacca aaaagtgaag aagcgcttgc tttggggagc agatctagga
4381 acagtgatcc gggccgcacg ggcctttggc ccattctgtg atgccataaa gtcccacaca
4441 attaaattac ctatcaaagt tggaatgaat tcaattgagg atgggccatt aatttatgca
4501 gagcattcaa aatataaata tcactttgat gcagactata cagcttggga ctcaacacaa
4561 aataggcaaa ttatgactga atcattctca atcatgtgtc ggctaactgc ttctccagaa
4621 ttggcctcag tggtggcaca agatcttctt gcaccctcag aaatggacgt tggtgactac
4681 gtcataagag tgaaggaagg cctcccatct ggcttcccat gcacatcaca ggtcaatagc
4741 ataaaccatt ggttgataac attgtgcgcc ctctctgagg tgactggcct gtcaccagat
4801 gttatccagt ccatgtcata cttttctttt tatggtgatg atgaaatagt ttctactgac
4861 atagaatttg acccagcaaa gctgacacaa gtccttaaag agtatggcct caaacccacc
4921 cgccctgaca agagtgaagg tccaataatt gtgaggaaga gtgtggatgg cctggtcttc
4981 ctacgtcgca ccatttcccg cgacgccgcg gggttccagg ggcgactgga ccgagcatcc
5041 attgaaaggc agatctactg gaccagaggg cccaatcact cagacccctt tgaaaccttg
5101 gtgccccacc agcaaagaaa aatccagctg gtatcactgt taggtgaggc ctcattgcat
5161 ggtgaaaaat tctacaggaa gatctcaagc aaagtcatcc aagagattaa gacagggggt
5221 cttgaaatgt atgtgccagg gtggcaagcc atgttccgct ggatgcggtt ccacgacctt
5281 ggcctgtgga caggagatcg caatctcctg cccgaattcg taaatgatga tggcgtctaa
5341 ggacgcccca acatcccctg atggcgccag tggcgccggc cagctggtac cggaggctaa
5401 tacagctgag caaatttcaa tggaccctgt tgcgggtgct tcaacagcag tcgcgacagc
5461 tgggcaagtt aacatgattg acccatggat tttcaataac tttgtccagg cacctcaagg
5521 agaattcact atttccccta ataatacccc cggtgatatt ttgtttgatt tacaactagg
5581 accccacctt aacccatttc tagcccatct ctcacagatg tacaatggtt gggtcggcaa
5641 tatgcgtgtg cgcatactgt tggccgggaa tgcctttaca gctggaaaga taatcatttg
5701 ctgtgtcccc cctggttttg atgccagagt actcacaata gctcaagcaa ctctcttccc
5761 acacttaatt gctgatgtaa ggacccttga gcctgtggag cttcctttgg aggatgtgcg
5821 caatgttctc ttccacaaca gtagccaacc gcagccaaca atgcggctgg ttgctatgtt
5881 gtacactccc ctccgcactg gtggtggttc cggaggcact gatgcctttg tggtggcggg
5941 tagggtgctt acgtgccccg cccccgactt tagttttctg tttctagtcc ccccttccgt
6001 tgaacaaaag accagagttt tcagtgtccc caatataccc ctgaaggacc tctcaaattc
6061 ccgtgtccct gtgccagtgc agggcatgtt tatgtcccca gatgttaatc agtcagtcca
6121 gtttcagaat ggacgctgcc aaattgatgg ccaactccaa ggcaccaccc cagtctcgct
6181 cagccaactc tgcaagatta ggggtaaaac ttctagcaat gctagggtgc tcaacttaag
6241 tgaggtagat ggcacaccct tcatcccact tgaatcacca gcgccagttg gttttcccga
6301 cttgggaggt tgtgattggc atgtaaattt cactttccag gctcaaaatc aggacccatc
6361 tcaaagtgta acctttgcaa ctaatgatgc tagctttgtc ccctatctag gtagtatctc
6421 tcctcacaat gggggagatt ttcatgcagg tgacatcata ggtagccttg gttggatttc
6481 agccccgtct gataattcac aacttaatgt ttggacaatt ccaaagtatg gatctagtct
6541 cccagatgtc actcatcttg cccctgctgt gttcccccca ggctttgggg aggtgatctt
6601 gtacttctat tctaccttcc caggttctgg acaatccagc caacttcaag tcccatgctt
6661 gttgcctcag gagtttatca cccacttttg taacgaacag gctcccatcg ctggggaggc
6721 tgccctcctc cactacgtgg accctgatac ggggcgaaac ttgggagaat ttaaacttta
6781 ccctgatggg tttatgacct gtgtccccaa tagtgttagt agtggccctc aaactctccc
6841 tatcaatgga gtctttgtct ttgtttcatg ggtatctaga ttctatcaac tcaagcctgt
6901 gggaacagcc tcagcggcta gaaggcttgg attgcggcgc atataatggc ccaagctgtc
6961 atcggtgcca tagccgcatc tgccgctggt agcatactag gggcaggcat acaggctggt
7021 gctgaggctg gtctccaggc tcaacggtat cagcaggatc tgcagttgca acaaaattct
7081 tttaagcatg ataaggaaat gttaggttac caagttcagg ctagtaatgc tcttttagct
7141 aagaatctta acactagata tgctcttctg caggcagggg gtctatctag cgctgatgct
7201 gctcgggcag tggctggtgc tcctgtcacc cgtatagtgg actggaatgg cacgcgcatt
7261 gcagcgccca cttcaagcac cactacactc agatctggtg gttttatggc tgtccctata
7321 ccattgtctt caaagaccaa gcaaccagtg atgtctgggc aggataatcc aaattatgct
7381 gcttcttcta tctctagaac tgcttcatgg gtgcaatctc aaaattctat gaggtctgtt
7441 tctccttttc acagtgatgc tttgagaacc gtttgggtta caccacccgg ttcatcatca
7501 acttcatctg tgcaatctag tttctatggt gtttttaata cagatagatt gcctctgttc
7561 gcaaacagaa ggtaataaaa ttttgtaata ggatgccagt gggcaccata ttcagatttg
7621 gttttaattg gattgtttta attaaaat
//