Typing tool
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Typing tool
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Complete norovirus genomes
| LC726061 | GI.6 | |
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| GI.P11 |
ORF1: 1..5353
ORF2: 5337..6959
ORF3: 6959..7588
LOCUS LC726061 7670 bp RNA linear VRL 26-AUG-2022
DEFINITION Norovirus GI.6 Hu/GI.6[P11]/1002/Tokyo/2021/Japan POL, VP1, VP2
genes for nonstructural polyprotein, capsid protein VP1, capsid
protein VP2, partial and complete cds.
ACCESSION LC726061
VERSION LC726061.1
KEYWORDS .
SOURCE Norovirus GI.6
ORGANISM Norovirus GI.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Suzuki,J. and Sadamasu,K.
TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo April
2021-March 2022
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7670)
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H.,
Nagashima,M., Suzuki,J. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2022) Contact:Yu Yaoita Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7670
/organism="Norovirus GI.6"
/mol_type="genomic RNA"
/strain="Hu/GI.6[P11]/1002/Tokyo/2021/Japan"
/host="Homo sapiens"
/db_xref="taxon:647520"
/country="Japan:Tokyo"
/collection_date="2021-12"
gene <1..5353
/gene="POL"
CDS <1..5353
/gene="POL"
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BDQ32308.1"
/translation="KDVVATNVASNNNANNTSATSRFLSRFKGLGGGASPPNPIKIKN
TEMALGLIGKTAQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVKSWEEL
DTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSVRDGVNLGVNRL
TTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSP
QAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCFEFCCQ
VMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPF
KNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFH
LQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLL
KKYFFGGDQTERTLKGIETAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARK
LSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAA
EHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIA
DSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPE
VEQIRRVSPGDTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTTINRLL
IQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLRGVTSM
DGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAASIALTR
LRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKEHKCRV
HQAKAAGKGPIGHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGRGRKNN
YNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGET
EMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYN
ERIDFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASIAIHRA
GEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQ
GRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVV
CAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYL
GGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPW
SYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYT
AALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMN
SIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQD
LLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMS
YFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRT
ISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLVSLLGEASLHGE
KFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
gene 5337..6959
/gene="VP1"
CDS 5337..6959
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BDQ32309.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARVLTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6959..7588
/gene="VP2"
CDS 6959..7588
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDQ32310.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gaaagacgtc gttgcgacta atgttgcaag caataacaac gctaacaaca ctagtgctac
61 atctcgattt ttgtcgagat ttaagggttt aggtggcggc gcgagccccc ctaaccccat
121 aaagatcaaa aacacagaaa tggccttggg tttgattggc aagacagccc aagaggcagt
181 aggtgccagt gacctaccgc ccaaacagca aagagatcgg ccccccagaa cccaggagga
241 agttcagtac ggcatggggt ggactgaaag gcccgtggac cagaatgtta agtcatggga
301 ggaacttgac acctccacca aggaagagat tttggacagc cacaaagaat ggttcgacgc
361 cggcggtttg ggcccgtgca ccatgccctc aacttgtgaa caggccaagg atgatagccc
421 acctggtgaa caagtcagat ggtcagtgcg tgatggagtc aaccttggag tgaaccgtct
481 cacgacagtg agtggccccg agtggaacct ctgccctcta ccccccattg acctaaggaa
541 tatggaacca gccagtgaac ccaccattgg agacatgata gagttttatg aaggccacat
601 ctaccactac tccatataca ttgggcaagg gaagacagtt ggtgttcatt ccccacaggc
661 agcattctca gtggctagag taaccatcca acctatagct gcttggtgga gggtttgtta
721 tataccccag cccaaacaca gactgagtta tgaccaactt agggaattgg aaaatgaacc
781 ctggccatat gcagctatca ccaacaattg ttttgagttt tgttgtcaag tcatgaatct
841 tgaggacaca tggttgcaga ggcggctaat aacatcaggt agattccacc atccttccca
901 gtcttggtca caacagaccc ctgaatttca gcaggacagt aaactggagc tggttaggga
961 tgctatattg gccgcagtga atggccttgt ttcacaaccc ttcaagaact tcttgggcaa
1021 gctcaagcct cttaatgtat taaacatcct atctaactgt gactggactt ttatgggggt
1081 ggtagagatg gttatactac tccttgagct ctttggcgtg ttctggaacc cgcccgatgt
1141 gtctaatttt atagcatctc tcctccctga cttccacctc cagggaccag aagacctggc
1201 ccgggatttg gtgccagtca ttcttggtgg cataggacta gccattggat ttaccagaga
1261 taaagtcacc aaggtcatga agagtgctgt ggatggactc cgggccgcta cacagctggg
1321 gcaatacggg ttggaaatat tctcactcct caagaagtat ttctttggtg gggatcagac
1381 cgaacgaacc ctcaaaggca ttgaaacagc agtcatagac atggaggttt tgtcctccac
1441 atcagtgaca caattggtga gagacaagca ggcagctaaa gcttacatga acatcctgga
1501 taatgaagag gaaaaagcta gaaaactctc tgctaagaat gctgaccccc atgtgatatc
1561 ctcaacaaat gccctaatat cacgtatagc catggcgcga tccgctctgg ctaaggctca
1621 ggctgagatg accagccgaa tgaggccagt tgtcatcatg atgtgtggac cccctggaat
1681 tggtaagact aaagcagcgg agcacttggc aaaacgccta gctaatgaga tcaggcctgg
1741 cggtaaagtg ggactggtac cacgtgaggc tgttgaccac tgggatggct accatggtga
1801 ggaagtgatg ctatgggatg actatggtat gacaaagata caagatgact gcaacaagct
1861 ccaggctatt gctgactctg ccccactcac tctcaattgt gataggattg aaaataaagg
1921 gatgcagttt gtgtcagatg caatagtcat caccaccaac gctccagggc ctgcccctgt
1981 ggactttgtc aaccttggcc cagtgtgtag acgggttgac ttcctggtct actgttccgc
2041 cccagaggta gagcagataa ggagagtcag ccctggagac acgtcggcac ttaaagactg
2101 cttcaagtca gatttctccc acctgaagat ggagttagct cctcaagggg ggtttgacaa
2161 ccagggaaac acaccattcg gcaagggtgt catgaaacca acaaccatca acaggctcct
2221 catacaagct gtggctctca ccatggagag acaggatgag ttccgtctcc aagggaagat
2281 gtatgatttt gatgatgata gggtgtcagc ctttaccacc atggcacgcg ataacggatt
2341 gggcatcctg agtatggcga gcctaggtaa gaagctgcgc ggtgtcacat cgatggatgg
2401 cctgaagaat gctttgaaag ggtataaaat tggtgcgtgc acaatcaagt ggcaggccaa
2461 ggtgtattca ctagagtcag atggcaacag tgttaacatc agggaggaga agaatgtctt
2521 gactcaacaa cagcagtcgg tgtgcgctgc ctctattgca ctcacccgtc tgcgggccgc
2581 acgcgcggtg gcgtatgcgt catgcatcca gtcagccata acctccatac tacaaattgc
2641 cgcctctgcc ctagtggtca acagggccgt gaaaagaatg tttggcacac gcactgctgc
2701 tttgtctcta gagggccccc ccaaagaaca caaatgcaga gtccaccagg ctaaagccgc
2761 aggaaaaggg cccattggcc atgatgacat ggttgataaa tatggcctat gcgagactga
2821 ggaggatgaa gaagtagtcc acactgagat accatctgcc accatggaag gtaagaacaa
2881 aggaaagaac aagaaagggc gcggccgaaa gaacaactac aacgcctttt cccgtagggg
2941 gctcaatgac gaagagtacg aggagtacaa gaaaatacgg gaagagaagg gtggaaatta
3001 cagcattcag gagtacctag aggatagaca aagatatgaa gaggagcttg ctgaggttca
3061 agcaggtgga gatggaggaa tcggtgaaac tgaaatggaa atccgccaca gagtgttcta
3121 caagtctaag agcaagaagc accaccagga agaacgacgc caactggggt tagtcacagg
3181 ttctgacatc cggaaaagaa aaccaattga ctggaccccc cctaagtcag catgggcaga
3241 tgatgagcgt gaagtggact acaatgagag gatcgacttt gaggcgcccc ccaccttgtg
3301 gagccgggtc acaaagtttg gatctgggtg gggcttctgg gtcagtccca cagtcttcat
3361 aaccacaacg cacgttatac caaccagtgc aaaagagttc tttggtgaac cccttgccag
3421 catagccatc catagagccg gagaattcac tctcttcagg ttctctaaga aaatcaggcc
3481 cgatctcacg ggtatgattc ttgaggaagg ttgcccagag ggtacggtgt gctcagtatt
3541 aataaaaagg gactccggtg agctactacc actggctgta agaatgggcg caatagcatc
3601 aatgcgcata cagggtcgcc ttgtccatgg ccagtctggt atgttgctca ctggggcgaa
3661 tgctaaaggc atggacctcg gaactattcc aggggattgt ggagctccct atgtctataa
3721 gagagcaaat gactgggtgg tttgtggtgt gcacgctgct gccactaaat caggcaacac
3781 ggtagtgtgc gccgtccagg ctagtgaagg ggaaaccaca cttgaggggg gtgataaagg
3841 tcactatgcc ggacatgaga taatcaagca tggatgtggg ccagccctgt caaccaaaac
3901 aaagttctgg aaatcgtccc ctgaaccact gccccctgga gtctatgaac ctgcatacct
3961 cggtggtcgg gatccaagag tgagtggtgg cccctcgctt caacaggtat tacgggatca
4021 gttaaaacca tttgctgagc cacgtgggcg tatgccggaa ccaggtctcc tggaggccgc
4081 agttgagact gtgacctcat cactggagca ggttatggat accccagtgc cgtggagtta
4141 cagcgatgca tgtcaatccc tagataaaac tactagctct ggttttcccc atcacaagaa
4201 gaagaatgat gattggaacg gcaccgcctt cattagagag ttgggagagc aggcagcgca
4261 cgccaataac atgtacgaac aagctaagag catgaagccc atgtacacgg cggcgcttaa
4321 ggatgaatta gtgaaaccag aaaaagtgta ccaaaaagtg aagaagcgct tgctttgggg
4381 agcagatcta ggaacagtga tccgggccgc acgggccttt ggcccattct gtgatgccat
4441 aaagtcccac acaattaaat tacctatcaa agttggaatg aattcaattg aggatgggcc
4501 attaatttat gcagagcatt caaaatataa atatcacttt gatgcagact atacagcttg
4561 ggactcaaca caaaataggc aaattatgac tgaatcattc tcaatcatgt gtcggctaac
4621 tgcttctcca gaattggcct cagtggtggc acaagatctt cttgcaccct cagaaatgga
4681 cgttggtgac tacgtcataa gagtgaagga aggcctccca tctggcttcc catgcacatc
4741 acaggtcaat agcataaacc attggttgat aacattgtgc gccctctctg aggtgactgg
4801 cctgtcacca gatgttatcc agtccatgtc atacttttct ttttatggtg atgatgaaat
4861 agtttctact gacatagaat ttgacccagc aaagctgaca caagtcctta aagagtatgg
4921 cctcaaaccc acccgccctg acaagagtga aggtccaata attgtgagga agagtgtgga
4981 tggcctggtc ttcctacgtc gcaccatttc ccgcgacgcc gcggggttcc aggggcgact
5041 ggaccgagca tccattgaaa ggcagatcta ctggaccaga gggcccaatc actcagaccc
5101 ctttgaaacc ttggtgcccc accagcaaag aaaaatccag ctggtatcac tgttaggtga
5161 ggcctcattg catggtgaaa aattctacag gaagatctca agcaaagtca tccaagagat
5221 taagacaggg ggtcttgaaa tgtatgtgcc agggtggcaa gccatgttcc gctggatgcg
5281 gttccacgac cttggcctgt ggacaggaga tcgcaatctc ctgcccgaat tcgtaaatga
5341 tgatggcgtc taaggacgcc ccaacatccc ctgatggcgc cagtggcgcc ggccagctgg
5401 taccggaggc taatacagct gagcaaattt caatggaccc tgttgcgggt gcttcaacag
5461 cagtcgcgac agctgggcaa gttaacatga ttgacccatg gattttcaat aactttgtcc
5521 aggcacctca aggagaattc actatttccc ctaataatac ccccggtgat attttgtttg
5581 atttacaact aggaccccac cttaacccat ttctagccca tctctcacag atgtacaatg
5641 gttgggtcgg caatatgcgt gtgcgcatac tgttggccgg gaatgccttt acagctggaa
5701 agataatcat ttgctgtgtc ccccctggtt ttgatgccag agtactcaca atagctcaag
5761 caactctctt cccacactta attgctgatg taaggaccct tgagcctgtg gagcttcctt
5821 tggaggatgt gcgcaatgtt ctcttccaca acagtagcca accgcagcca acaatgcggc
5881 tggttgctat gttgtacact cccctccgca ctggtggtgg ttccggaggc actgatgcct
5941 ttgtggtggc gggtagggtg cttacgtgcc ccgcccccga ctttagtttt ctgtttctag
6001 tccccccttc cgttgaacaa aagaccagag ttttcagtgt ccccaatata cccctgaagg
6061 acctctcaaa ttcccgtgtc cctgtgccag tgcagggcat gtttatgtcc ccagatgtta
6121 atcagtcagt ccagtttcag aatggacgct gccaaattga tggccaactc caaggcacca
6181 ccccagtctc gctcagccaa ctctgcaaga ttaggggtaa aacttctagc aatgctaggg
6241 tgctcaactt aagtgaggta gatggcacac ccttcatccc acttgaatca ccagcgccag
6301 ttggttttcc cgacttggga ggttgtgatt ggcatgtaaa tttcactttc caggctcaaa
6361 atcaggaccc atctcaaagt gtaacctttg caactaatga tgctagcttt gtcccctatc
6421 taggtagtat ctctcctcac aatgggggag attttcatgc aggtgacatc ataggtagcc
6481 ttggttggat ttcagccccg tctgataatt cacaacttaa tgtttggaca attccaaagt
6541 atggatctag tctcccagat gtcactcatc ttgcccctgc tgtgttcccc ccaggctttg
6601 gggaggtgat cttgtacttc tattctacct tcccaggttc tggacaatcc agccaacttc
6661 aagtcccatg cttgttgcct caggagttta tcacccactt ttgtaacgaa caggctccca
6721 tcgctgggga ggctgccctc ctccactacg tggaccctga tacggggcga aacttgggag
6781 aatttaaact ttaccctgat gggtttatga cctgtgtccc caatagtgtt agtagtggcc
6841 ctcaaactct ccctatcaat ggagtctttg tctttgtttc atgggtatct agattctatc
6901 aactcaagcc tgtgggaaca gcctcagcgg ctagaaggct tggattgcgg cgcatataat
6961 ggcccaagct gtcatcggtg ccatagccgc atctgccgct ggtagcatac taggggcagg
7021 catacaggct ggtgctgagg ctggtctcca ggctcaacgg tatcagcagg atctgcagtt
7081 gcaacaaaat tcttttaagc atgataagga aatgttaggt taccaagttc aggctagtaa
7141 tgctctttta gctaagaatc ttaacactag atatgctctt ctgcaggcag ggggtctatc
7201 tagcgctgat gctgctcggg cagtggctgg tgctcctgtc acccgtatag tggactggaa
7261 tggcacgcgc attgcagcgc ccacttcaag caccactaca ctcagatctg gtggttttat
7321 ggctgtccct ataccattgt cttcaaagac caagcaacca gtgatgtctg ggcaggataa
7381 tccaaattat gctgcttctt ctatctctag aactgcttca tgggtgcaat ctcaaaattc
7441 tatgaggtct gtttctcctt ttcacagtga tgctttgaga accgtttggg ttacaccacc
7501 cggttcatca tcaacttcat ctgtgcaatc tagtttctat ggtgttttta atacagatag
7561 attgcctctg ttcgcaaaca gaaggtaata aaattttgta ataggatgcc agtgggcacc
7621 atattcagat ttggttttaa ttggattgtt ttaattaaaa tttggcttag
//