Typing tool
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Typing tool
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Complete norovirus genomes
| LC726060 | GI.6 | |
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| GI.P11 |
ORF1: 1..5354
ORF2: 5338..6960
ORF3: 6960..7589
LOCUS LC726060 7667 bp RNA linear VRL 26-AUG-2022
DEFINITION Norovirus GI.6 Hu/GI.6[P11]/997F/Tokyo/2021/Japan POL, VP1, VP2
genes for nonstructural polyprotein, capsid protein VP1, capsid
protein VP2, partial and complete cds.
ACCESSION LC726060
VERSION LC726060.1
KEYWORDS .
SOURCE Norovirus GI.6
ORGANISM Norovirus GI.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Suzuki,J. and Sadamasu,K.
TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo April
2021-March 2022
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7667)
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H.,
Nagashima,M., Suzuki,J. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2022) Contact:Yu Yaoita Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7667
/organism="Norovirus GI.6"
/mol_type="genomic RNA"
/strain="Hu/GI.6[P11]/997F/Tokyo/2021/Japan"
/host="Homo sapiens"
/db_xref="taxon:647520"
/country="Japan:Tokyo"
/collection_date="2021-12"
gene <1..5354
/gene="POL"
CDS <1..5354
/gene="POL"
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BDQ32305.1"
/translation="KDVVATNVASNNNANNTSATSRFLSRFKGLGGGASPPNPIKIKS
TEMALGLIGKTAQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVKSWEEL
DTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSVRDGVNLGVNRL
TTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSP
QAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCFEFCCQ
VMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPF
KNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFH
LQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLL
KKYFFGGDQTERTLKGIETAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARK
LSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAA
EHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIA
DSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPE
VEQIRRVSPGDTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTTINRLL
IQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLRGVTSM
DGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAASIALTR
LRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKEHKCRV
HQAKAAGKGPIGHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGRGRKNN
YNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGET
EMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYN
ERIDFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASIAIHRA
GEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQ
GRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVV
CAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYL
GGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPW
SYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYT
AALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMN
SIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQD
LLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMS
YFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRT
ISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLVSLLGEASLHGE
KFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
gene 5338..6960
/gene="VP1"
CDS 5338..6960
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BDQ32306.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARVLTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6960..7589
/gene="VP2"
CDS 6960..7589
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDQ32307.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 cgaaagacgt cgttgcgact aatgttgcaa gcaataacaa cgctaacaac actagtgcta
61 catctcgatt tttgtcgaga tttaagggtt taggtggcgg cgcgagcccc cctaacccca
121 taaagatcaa aagcacagaa atggccttgg gtttgattgg caagacagcc caagaggcag
181 taggtgccag tgacctaccg cccaaacagc aaagagatcg gccccccaga acccaggagg
241 aagttcagta cggcatgggg tggactgaaa ggcccgtgga ccagaatgtt aagtcatggg
301 aggaacttga cacctccacc aaggaagaga ttttggacag ccacaaagaa tggttcgacg
361 ccggcggttt gggcccgtgc accatgccct caacttgtga acaggccaag gatgatagcc
421 cacctggtga acaagtcaga tggtcagtgc gtgatggagt caaccttgga gtgaaccgtc
481 tcacgacagt gagtggcccc gagtggaacc tctgccctct accccccatt gacctaagga
541 atatggaacc agccagtgaa cccaccattg gagacatgat agagttttat gaaggccaca
601 tctaccacta ctccatatac attgggcaag ggaagacagt tggtgttcat tccccacagg
661 cagcattctc agtggctaga gtaaccatcc aacctatagc tgcttggtgg agggtttgtt
721 atatacccca gcccaaacac agactgagtt atgaccaact tagggaattg gaaaatgaac
781 cctggccata tgcagctatc accaacaatt gttttgagtt ttgttgtcaa gtcatgaatc
841 ttgaggacac atggttgcag aggcggctaa taacatcagg tagattccac catccttccc
901 agtcttggtc acaacagacc cctgaatttc agcaggacag taaactggag ctggttaggg
961 atgctatatt ggccgcagtg aatggccttg tttcacaacc cttcaagaac ttcttgggca
1021 agctcaagcc tcttaatgta ttaaacatcc tatctaactg tgactggact tttatggggg
1081 tggtagagat ggttatacta ctccttgagc tctttggcgt gttctggaac ccgcccgatg
1141 tgtctaattt tatagcatct ctcctccctg acttccacct ccagggacca gaagacctgg
1201 cccgggattt ggtgccagtc attcttggtg gcataggact agccattgga tttaccagag
1261 ataaagtcac caaggtcatg aagagtgctg tggatggact ccgggccgct acacagctgg
1321 ggcaatacgg gttggaaata ttctcactcc tcaagaagta tttctttggt ggggatcaga
1381 ccgaacgaac cctcaaaggc attgaaacag cagtcataga catggaggtt ttgtcctcca
1441 catcagtgac acaattggtg agagacaagc aggcagctaa agcttacatg aacatcctgg
1501 ataatgaaga ggaaaaagct agaaaactct ctgctaagaa tgctgacccc catgtgatat
1561 cctcaacaaa tgccctaata tcacgtatag ccatggcgcg atccgctctg gctaaggctc
1621 aggctgagat gaccagccga atgaggccag ttgtcatcat gatgtgtgga ccccctggaa
1681 ttggtaagac taaagcagcg gagcacttgg caaaacgcct agctaatgag atcaggcctg
1741 gcggtaaagt gggactggta ccacgtgagg ctgttgacca ctgggatggc taccatggtg
1801 aggaagtgat gctatgggat gactatggta tgacaaagat acaagatgac tgcaacaagc
1861 tccaggctat tgctgactct gccccactca ctctcaattg tgataggatt gaaaataaag
1921 ggatgcagtt tgtgtcagat gcaatagtca tcaccaccaa cgctccaggg cctgcccctg
1981 tggactttgt caaccttggc ccagtgtgta gacgggttga cttcctggtc tactgttccg
2041 ccccagaggt agagcagata aggagagtca gccctggaga cacgtcggca cttaaagact
2101 gcttcaagtc agatttctcc cacctgaaga tggagttagc tcctcaaggg gggtttgaca
2161 accagggaaa cacaccattc ggcaagggtg tcatgaaacc aacaaccatc aacaggctcc
2221 tcatacaagc tgtggctctc accatggaga gacaggatga gttccgtctc caagggaaga
2281 tgtatgattt tgatgatgat agggtgtcag cctttaccac catggcacgc gataacggat
2341 tgggcatcct gagtatggcg agcctaggta agaagctgcg cggtgtcaca tcgatggatg
2401 gcctgaagaa tgctttgaaa gggtataaaa ttggtgcgtg cacaatcaag tggcaggcca
2461 aggtgtattc actagagtca gatggcaaca gtgttaacat cagggaggag aagaatgtct
2521 tgactcaaca acagcagtcg gtgtgcgctg cctctattgc actcacccgt ctgcgggccg
2581 cacgcgcggt ggcgtatgcg tcatgcattc agtcagccat aacctccata ctacaaattg
2641 ccgcctctgc cctagtggtc aacagggccg tgaaaagaat gtttggcaca cgcactgctg
2701 ctttgtctct agagggcccc cccaaagaac acaaatgcag agtccaccag gctaaagccg
2761 caggaaaagg gcccattggc catgatgaca tggttgataa atatggccta tgcgagactg
2821 aggaggatga agaagtagtc cacactgaga taccatctgc caccatggaa ggtaagaaca
2881 aaggaaagaa caagaaaggg cgcggccgaa agaacaacta caacgccttt tcccgtaggg
2941 ggctcaatga cgaagagtac gaggagtaca agaaaatacg ggaagagaag ggtggaaatt
3001 acagcattca ggagtaccta gaggatagac aaagatatga agaggagctt gctgaggttc
3061 aagcaggtgg agatggagga atcggtgaaa ctgaaatgga aatccgccac agagtgttct
3121 acaagtctaa gagcaagaag caccaccagg aagaacgacg ccaactgggg ttagtcacag
3181 gttctgacat ccggaaaaga aaaccaattg actggacccc ccctaagtca gcatgggcag
3241 atgatgagcg tgaagtggac tacaatgaga ggatcgactt tgaggcgccc cccaccttgt
3301 ggagccgggt cacaaagttt ggatctgggt ggggcttctg ggtcagtccc acagtcttca
3361 taaccacaac gcacgttata ccaaccagtg caaaagagtt ctttggtgaa ccccttgcca
3421 gcatagccat ccatagagcc ggagaattca ctctcttcag gttctctaag aaaatcaggc
3481 ccgatctcac gggtatgatt cttgaggaag gttgcccaga gggtacggtg tgctcagtat
3541 taataaaaag ggactccggt gagctactac cactggctgt aagaatgggc gcaatagcat
3601 caatgcgcat acagggtcgc cttgtccatg gccagtctgg tatgttgctc actggggcga
3661 atgctaaagg catggacctc ggaactattc caggggattg tggagctccc tatgtctata
3721 agagagcaaa tgactgggtg gtttgtggtg tgcacgctgc tgccactaaa tcaggcaaca
3781 cggtagtgtg cgccgtccag gctagtgaag gggaaaccac acttgagggg ggtgataaag
3841 gtcactatgc cggacatgag ataatcaagc atggatgtgg gccagccctg tcaaccaaaa
3901 caaagttctg gaaatcgtcc cctgaaccac tgccccctgg agtctatgaa cctgcatacc
3961 tcggtggtcg ggatccaaga gtgagtggtg gcccctcgct tcaacaggta ttacgggatc
4021 agttaaaacc atttgctgag ccacgtgggc gtatgccgga accaggtctc ctggaggccg
4081 cagttgagac tgtgacctca tcactggagc aggttatgga taccccagtg ccgtggagtt
4141 acagcgatgc atgtcaatcc ctagataaaa ctactagctc tggttttccc catcacaaga
4201 agaagaatga tgattggaac ggcaccgcct tcattagaga gttgggagag caggcagcgc
4261 acgccaataa catgtacgaa caagctaaga gcatgaagcc catgtacacg gcggcgctta
4321 aggatgaatt agtgaaacca gaaaaagtgt accaaaaagt gaagaagcgc ttgctttggg
4381 gagcagatct aggaacagtg atccgggccg cacgggcctt tggcccattc tgtgatgcca
4441 taaagtccca cacaattaaa ttacctatca aagttggaat gaattcaatt gaggatgggc
4501 cattaattta tgcagagcat tcaaaatata aatatcactt tgatgcagac tatacagctt
4561 gggactcaac acaaaatagg caaattatga ctgaatcatt ctcaatcatg tgtcggctaa
4621 ctgcttctcc agaattggcc tcagtggtgg cacaagatct tcttgcaccc tcagaaatgg
4681 acgttggtga ctacgtcata agagtgaagg aaggcctccc atctggcttc ccatgcacat
4741 cacaggtcaa tagcataaac cattggttga taacattgtg cgccctctct gaggtgactg
4801 gcctgtcacc agatgttatc cagtccatgt catacttttc tttttatggt gatgatgaaa
4861 tagtttctac tgacatagaa tttgacccag caaagctgac acaagtcctt aaagagtatg
4921 gcctcaaacc cacccgccct gacaagagtg aaggtccaat aattgtgagg aagagtgtgg
4981 atggcctggt cttcctacgt cgcaccattt cccgcgacgc cgcggggttc caggggcgac
5041 tggaccgagc atccattgaa aggcagatct actggaccag agggcccaat cactcagacc
5101 cctttgaaac cttggtgccc caccagcaaa gaaaaatcca gctggtatca ctgttaggtg
5161 aggcctcatt gcatggtgaa aaattctaca ggaagatctc aagcaaagtc atccaagaga
5221 ttaagacagg gggtcttgaa atgtatgtgc cagggtggca agccatgttc cgctggatgc
5281 ggttccacga ccttggcctg tggacaggag atcgcaatct cctgcccgaa ttcgtaaatg
5341 atgatggcgt ctaaggacgc cccaacatcc cctgatggcg ccagtggcgc cggccagctg
5401 gtaccggagg ctaatacagc tgagcaaatt tcaatggacc ctgttgcggg tgcttcaaca
5461 gcagtcgcga cagctgggca agttaacatg attgacccat ggattttcaa taactttgtc
5521 caggcacctc aaggagaatt cactatttcc cctaataata cccccggtga tattttgttt
5581 gatttacaac taggacccca ccttaaccca tttctagccc atctctcaca gatgtacaat
5641 ggttgggtcg gcaatatgcg tgtgcgcata ctgttggccg ggaatgcctt tacagctgga
5701 aagataatca tttgctgtgt cccccctggt tttgatgcca gagtactcac aatagctcaa
5761 gcaactctct tcccacactt aattgctgat gtaaggaccc ttgagcctgt ggagcttcct
5821 ttggaggatg tgcgcaatgt tctcttccac aacagtagcc aaccgcagcc aacaatgcgg
5881 ctggttgcta tgttgtacac tcccctccgc actggtggtg gttccggagg cactgatgcc
5941 tttgtggtgg cgggtagggt gcttacgtgc cccgcccccg actttagttt tctgtttcta
6001 gtcccccctt ccgttgaaca aaagaccaga gttttcagtg tccccaatat acccctgaag
6061 gacctctcaa attcccgtgt ccctgtgcca gtgcagggca tgtttatgtc cccagatgtt
6121 aatcagtcag tccagtttca gaatggacgc tgccaaattg atggccaact ccaaggcacc
6181 accccagtct cgctcagcca actctgcaag attaggggta aaacttctag caatgctagg
6241 gtgctcaact taagtgaggt agatggcaca cccttcatcc cacttgaatc accagcgcca
6301 gttggttttc ccgacttggg aggttgtgat tggcatgtaa atttcacttt ccaggctcaa
6361 aatcaggacc catctcaaag tgtaaccttt gcaactaatg atgctagctt tgtcccctat
6421 ctaggtagta tctctcctca caatggggga gattttcatg caggtgacat cataggtagc
6481 cttggttgga tttcagcccc gtctgataat tcacaactta atgtttggac aattccaaag
6541 tatggatcta gtctcccaga tgtcactcat cttgcccctg ctgtgttccc cccaggcttt
6601 ggggaggtga tcttgtactt ctattctacc ttcccaggtt ctggacaatc cagccaactt
6661 caagtcccat gcttgttgcc tcaggagttt atcacccact tttgtaacga acaggctccc
6721 atcgctgggg aggctgccct cctccactac gtggaccctg atacggggcg aaacttggga
6781 gaatttaaac tttaccctga tgggtttatg acctgtgtcc ccaatagtgt tagtagtggc
6841 cctcaaactc tccctatcaa tggagtcttt gtctttgttt catgggtatc tagattctat
6901 caactcaagc ctgtgggaac agcctcagcg gctagaaggc ttggattgcg gcgcatataa
6961 tggcccaagc tgtcatcggt gccatagccg catctgccgc tggtagcata ctaggggcag
7021 gcatacaggc tggtgctgag gctggtctcc aggctcaacg gtatcagcag gatctgcagt
7081 tgcaacaaaa ttcttttaag catgataagg aaatgttagg ttaccaagtt caggctagta
7141 atgctctttt agctaagaat cttaacacta gatatgctct tctgcaggca gggggtctat
7201 ctagcgctga tgctgctcgg gcagtggctg gtgctcctgt cacccgtata gtggactgga
7261 atggcacgcg cattgcagcg cccacttcaa gcaccactac actcagatct ggtggtttta
7321 tggctgtccc tataccattg tcttcaaaga ccaagcaacc agtgatgtct gggcaggata
7381 atccaaatta tgctgcttct tctatctcta gaactgcttc atgggtgcaa tctcaaaatt
7441 ctatgaggtc tgtttctcct tttcacagtg atgctttgag aaccgtttgg gttacaccac
7501 ccggttcatc atcaacttca tctgtgcaat ctagtttcta tggtgttttt aatacagata
7561 gattgcctct gttcgcaaac agaaggtaat aaaattttgt aataggatgc cagtgggcac
7621 catattcaga tttggtttta attggattgt tttaattaaa atttggc
//