Typing tool
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Typing tool
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Complete norovirus genomes
| LC726059 | GII.6 | |
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| GII.P7 |
ORF1: 1..5084
ORF2: 5065..6708
ORF3: 6708..7484
LOCUS LC726059 7505 bp RNA linear VRL 26-AUG-2022
DEFINITION Norovirus GII.6 Hu/GII.6[P7]/178F/Tokyo/2021/Japan POL, VP1, VP2
genes for nonstructural polyprotein, capsid protein VP1, capsid
protein VP2, partial and complete cds.
ACCESSION LC726059
VERSION LC726059.1
KEYWORDS .
SOURCE Norovirus GII.6
ORGANISM Norovirus GII.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Suzuki,J. and Sadamasu,K.
TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo April
2021-March 2022
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7505)
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kawakami,M., Hayashi,M., Yamazaki,T., Kuroki,K.,
Kitamura,Y., Kaku,E., Isogai,M., Fujiwara,T., Miyake,H.,
Nagashima,M., Suzuki,J. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2022) Contact:Yu Yaoita Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7505
/organism="Norovirus GII.6"
/mol_type="genomic RNA"
/strain="Hu/GII.6[P7]/178F/Tokyo/2021/Japan"
/host="Homo sapiens"
/db_xref="taxon:499193"
/country="Japan:Tokyo"
/collection_date="2021-05"
gene <1..5084
/gene="POL"
CDS <1..5084
/gene="POL"
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BDQ32302.1"
/translation="SNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLGA
VPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKLETVRGLPDLTTVQNE
HENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAIS
LATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDT
WLSRRSISRTTGFFKPHQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGK
LKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGPED
LAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFP
KKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLST
KSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHL
AKSVANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTC
PVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEK
VKRDFPGQPDMWKDHFKPDFSHIKLSLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARV
AGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTL
EDLKAALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLR
QARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTEIQETSESEKEVAQ
GRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEE
YLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIR
KRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITT
THVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSIL
VKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYI
YKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPK
LSTKTKFWRSSPDALPPGTYEPAYLGGRDPRVEKGPSLQQVMRDQLKPFTEPRGKPPR
PAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFT
GPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRC
ARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRS
ILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSI
AHWILTLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVP
TRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPY
ESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWM
RFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5065..6708
/gene="VP1"
CDS 5065..6708
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BDQ32303.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRARNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
QPTRFTPIGMGADDWRQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRIQ"
gene 6708..7484
/gene="VP2"
CDS 6708..7484
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDQ32304.1"
/translation="MAGVFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLSRSESPKIKVNSDSASVYSSASTVPSQST
HSTVLTAGSSSSRTASSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 cgtctaacga cgctaccact gcctttggca gccaaaactc tgtcaatgac agtatcaaca
61 ctgccccttc taataaagaa gaggttggtg cattctccaa catcaaagtt ggttttaaga
121 aaatgctggg tgccgttccc aaggggacca aagcacccag tagtgatcaa cattgcccct
181 cagttaagat cgggaccaag acattaacag ttcctcctga gcccccaaat ggtgaagaca
241 ccgtgcagtt tgatgcgaag ttggaaactg tgcgcgggtt accagacttg acaacggtgc
301 agaacgaaca cgaaaacaca ccatacactg tccccccatt gagtgaaagg gagcacagac
361 cagctaccga accgcttcct ggcacaatac tggagatgtg ggatggtgaa ttctaccatt
421 actctgtgta cgtcagcggt ggcaaagccc taggggtaca caagccccct gcagcgataa
481 gcctcgcgac gatagagctc acacccatat cactttattg gaggcccgtt tacaccccca
541 actatctggt ctgtccagac acgttgaagg gccttgctgg tgagaagttc ccctacacgg
601 ccttcagcaa caactgttac aacttctgtt gctgggtgct tgagctcaat gacacgtggc
661 tgagcaggag aagcatttct aggaccaccg gcttcttcaa accacaccag tcttggaata
721 ggaaacccct tccaaccgtt gatgatggaa agatcaaaaa ggtggccaac gcaatcctct
781 gtgcacttgg atcactgttt tcaaaaccaa tcaaggacct attgggcaaa cttaaaccat
841 tgaacttgct gcacttgctc gcatcatgtg actggacgtt tgcaggtata gtagaaacag
901 tcatcctaat ggcggaactt ttcggcatct tttggacacc gccagatgtt tccagtttca
961 tagcctccct gataggtgat tttgaattgc aagggccgga ggacctggct gtggagcttg
1021 tacccgtggt catgggtggc ataggaatgg ttctcggctt tactgctgag aagattggcc
1081 gcatgctatc gtccgctgca tcaacactac gggcgtgcaa agacttgggg aattatgctc
1141 ttgacatatt gaaactggtt atgaagtggt tcttcccaaa gaaagaagag aaagccgaga
1201 tggaaaccct aagggcgatt gaggatgccg tcctggacat ggaagctata ggaaataacc
1261 atctcacaac cctcctcaag gataaggata gcctcacggc tttcatgaag actctagatc
1321 tagaagaaga gaaggcgaga aagctgtcca ccaaatcatc ctcgccggac attgtcggca
1381 ccattaatgc catactggct agaatagctg ctgccaggtc cctcttgcac aaggctaaag
1441 aagaaatgtt cagcaggatc agacccgtgg ttgtcatgat ctcaggtaga cctggcattg
1501 gcaaaaccca catggcgaga cacttggcca agagtgtcgc caacaccatg agcggcgacc
1561 agagagtggg gctcgtccca cgcaacgggg ttgatcattg ggacgcctac aggggagaga
1621 gggtggtttt atgggatgat tatggcatgg gaaaccctgt caaagatgcc ttaacactac
1681 aagagctggc cgacacctgc ccagtgactc taaactgtga taggattgag aacaagggga
1741 agatgtttga cagtgatgtc attataatca cgaccaattt ggtcaaccca gcgcccctcg
1801 attatgtaaa cttcgaggcg tgctccagaa gggtcgactt tctggtctat gcagagtcgc
1861 cagaaattga gaaggttaag agagacttcc ccggtcaacc tgacatgtgg aaggaccatt
1921 tcaagccaga cttttcccac ataaaactgt ctctagcccc acaaggtgga tttgacaaga
1981 atggcaacac cccgcatggt aagggcacca tgcgatccct aacccagggg tccctgactg
2041 caagggttgc aggtcttgtt catgagagga gagacgagtt tcagctccag gggaacgacc
2101 tccaaacata taactttgat accaacagag tctctgcatt taggaagttg gccgcagaca
2161 acaagtatgg gatcatggag actatgagag tgggcacggc gcttaagagc gtcaagacct
2221 tggaagatct gaaagctgca ctgagggatg tgaagttcaa tgagtgtgag ataatttaca
2281 aaaactccaa ataccgagtc tcttccaatg gtaaaggttc tgtctctgtt gacaaagttg
2341 aggaccaaac atcccagacc gcaaacgaag tgggtgcagc actccttaga ctcagacagg
2401 caagagccag gtactatgtc agctgcttcc aagacctcgt ttacacccta atacaggtcg
2461 ccggagcatc attcgttgtc aacagaatct ctaaaaggtt ctgctgggag agatgggtca
2521 aaccaaccga gatccaggaa acgagtgaat ccgaaaagga agtggcccaa ggcagatggg
2581 agattgagcc caaggacaca gaaccagaag gtaagaaggg taagaacaag aaaggaagag
2641 gcaagaaaca cacagctttc tccagtaaag gcctgagtga tgaggagtat gacgagttca
2701 agagaattag agaagaaagg aacgggaaat actccattga ggaatacctg caagaccggg
2761 atcgctacta tgaggaagtg gcagttgccc gggcgacaga ggaggacttc tgtgaagagg
2821 aagaggccaa gataaggcaa agaatctttc gccccacaaa gaaacagagg aaggaagaaa
2881 ggggggtgct tggtttggtt actggctcag acatcaggaa gagaagacca gacgattttc
2941 aaccgaaggg caacctgtgg gcggacgaca ccaggagtgt ggactacaac gagagacttg
3001 atttcgaggc ccccccgagt gtctggtcaa gaatagtccc attgggcact ggctggggct
3061 tctgggtctc atcaaacctt ctgatcacaa caacgcacgt cctacctaag gggattaatg
3121 aactctttgg agttgagatc aaacagattc agattcataa gtctggagag ttctgcaggt
3181 tcagattccc aagaccaatt agaccggatg tcacagggct cgtgttggag gaaggcgctc
3241 cagaaggcac tgtctgctcc atacttgtga agagacccac aggtgagatg atccccctag
3301 cagtgaggat gggtacgcat gcatccatga agatacaggg taggaccgtc ggtggccaga
3361 tggggatgct ccttacgggg gcaaatgcga agaacatgga ccttggcacc ggtcctggtg
3421 attgcggttg cccttacatc tacaaacgtg gcaatgatat agttgtcgcg ggtgtccaca
3481 ccgcagcagc ccggggaggc aacactgtca tatgtgccac tcaagggcaa gatggggaag
3541 cagtccttga gggaaatgag aaccttggca cttactgtgg tgctccaatc ttgggtccag
3601 gcaaggcgcc caaacttagc acgaagacca agttctggcg ttcatcacca gacgctttgc
3661 cgccaggcac ttacgagcct gcctacttgg gaggtaggga ccctagagtg gaaaaaggac
3721 catccctgca gcaagtcatg agggaccagc taaaaccttt cacagaaccc aggggcaagc
3781 cacctagacc tgcagtctta gaagaagcca aaaagacagt gatgaatgtt ctagagcaaa
3841 ccattgaccc tgctaaacca tggacctatt cccaagcatg cgcctcactg gacaagacca
3901 cttccagtgg tagcccccat catgtcagga aaaatgacca ttggaatggg gaatccttca
3961 ctggccccct cgcagaccaa gcgtccaaag ccaacctcat gtacgagcag gccaagcatg
4021 tgcagcccgt gtacacggcc gcacttaaag atgaactagt caaaactgat aagatctaca
4081 agaagataaa gaaaaggctc ttatgggggt cggatcttgg tacaatgatt aggtgtgcca
4141 gggcctttgg cggtctcatg gatagcatga aggcaagctg tatagccctc ccatgtaggg
4201 taggaatgaa catgaatgaa gatggcccca tcatatttga caagcattct aagtataggt
4261 accattatga tgctgactat tccaggtggg actcaaccca gcaaaggagc attctctcgg
4321 ccgctatgga agtgatggtg cggttctctg ctgaaccaga gctggcacaa gtggttgcag
4381 aggacctcct ggcacccagc caactagatg ttggcgattt cgtcatctca gtccaggagg
4441 gtctgccatc aggggtccca tgcacatcac aatggaactc aatagcacac tggatcctaa
4501 ccttgagtgc aatggcagaa gtatcgggtc tctcaccaga tgttattcaa gcccactcct
4561 gtttctcatt ctacggtgat gatgagatcg tcagtactga catcaacctt gaccccatga
4621 agttgacaca gaagctcaga gagtatggcc tggtccccac ccgacctgac aaaactgagg
4681 gtcccctcgt aataactgaa gatctcaccg gcctaacgtt cctgcgtagg tcaattgcac
4741 gggacccagc tgggtggttt ggaaaattgg accaagactc aatcctcaga cagttgtact
4801 ggacaagggg ccccaaccat gagaacccat atgagagcat ggtccctcat tcccagcggg
4861 ccacacaact tatggccctc ctcggtgagg cttcactgca tggtcctcag ttttacaaga
4921 aagttagcaa gatggttatt aatgagatca aaagtggtgg tctggaattc tatgtgccca
4981 gacaagaggc catgttcaga tggatgagat tctctgacct cagcacatgg gagggcgatc
5041 gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgctgc tccatcgaat
5101 gatggtgctg ccaacctcgt accagaggcc accaatgagg ttatggcact tgagccggtg
5161 gtgggagctt caattgctgc tcctgtcgtc ggccaacaaa atataattga cccctggatt
5221 agagaaaatt ttgttcaggc accacagggt gagtttactg tatcaccaag gaactcacct
5281 ggtgagatgc ttctaaatct tgaattaggc cctgagctca acccttatct gagtcacttg
5341 tcccgcatgt ataacggcta tgctggtggt atgcaggttc aggtggtcct agctgggaat
5401 gcgttcacag ctggtaaaat catctttgcc gccgtcccac cacatttccc tgttgagaac
5461 attagtgcag cccaaatcac aatgtgcccc catgtaattg ttgatgtaag acagcttgag
5521 ccagtgcttt tgcccctccc tgacataagg aatagattct ttcattataa tcaggaagat
5581 accccccgga tgagacttgt ggctatgttg tatacacccc ttagagcaaa ttctggtgag
5641 gatgtgttta cggtgtcttg cagagttctg acccgccctg cccccgactt tgagttcacg
5701 tttttggtgc caccaactgt ggagtcaaag actaagccct ttacactccc cattctgact
5761 cttggagagc tgtctaactc cagattcccc gctccgatag acatgttgta cactgatccc
5821 aatgaggcaa ttgtggtgca accacaaaat ggcaggtgca ctctagatgg aacacttcaa
5881 gggaccaccc aactggtacc cacccagatt tgctccttca ggggcacact aattagtcag
5941 acgtcgaggt ccgcagattc aacagattca gccccacggg cgaggaacca ccctctccac
6001 gttcagctga agaacctcga tgggacacca tatgacccaa cagatgaggt gccagcagtt
6061 ttaggtgcca tagatttcaa aggaactgtg tttggggtcg ctagccaaag aaacaccaca
6121 gggaactcta taggagcaac ccgcgcccat gaagtacaca tagacaccac aaaccctaga
6181 tacaccccaa aacttggctc tgtgttgatg cattctgaat ctactgattt tgatgatgga
6241 caacccaccc gcttcacccc cattggtatg ggagccgatg attggcgcca atgggaattg
6301 cccgaatatt ctggtcacct cactcttaat atgaacttgg cccctgcagt cgcccctgct
6361 ttccctggtg agcgcattct cttcttcaga tcagtggtgc cgtctgctgg gggctatgga
6421 tcaggccaca tagattgcct catcccacag gagtgggttc agcatttcta tcaggaggcc
6481 gctccatcac aatctgcggt ggctcttatc agatatgtca accctgacac tggaagaaac
6541 atctttgagg caaaactgca tagagaaggg ttcatcactg tggcaaattc tggaaacaac
6601 cccatagttg tgcccccaaa tggttacttc aggtttgagg cctgggtcaa tcaattctac
6661 acactcaccc ccatgggaac tgggcagggg cgcagaagaa ttcaataatg gcaggagttt
6721 tcttagctgg attggcaggt gacgccataa caagtggtgt cgggtcccta attaatgctg
6781 gggccaatgc aattaaccaa aaggtagaat atgactttaa taaacagctc caattggcat
6841 ccttcaaaca tgacaaagag atgttgcaat cacaagtact ggccactaaa cagctccagc
6901 aggagatgat gaacataagg caaggggtct tgtccgctgg cggcttttcc cctacagatg
6961 ccgcgagagg tgctgtgaac gcgccgatga caaaaatttt ggattggaat ggaacaaggt
7021 actttgcccc aaacagtatg aagacaacca gttattcggg ccagttctcc agcaaccccg
7081 tgcataggca gcccactctg tcccgttctg aatccccaaa aattaaggtt aatagtgatt
7141 ctgctagtgt gtatagttct gcatctactg ttccttcaca atcaactcac tcaacggttt
7201 tgactgcggg gtctagctca tctaggacag catcctcttc tgcagcagct tccaccctat
7261 ctaggactag tgactgggtg agaggacaaa atgaaaggct tagcccgttt atggatggtg
7321 ctctccaaac aacttttgtc acaccaccat cgagcaaagc ttcatcatat gggtcggtct
7381 caaccgttcc caaagctgtt ttggactcct ggactcctat gttcaatacc cataggcagc
7441 ctctcttcgc tcatgtgcgc aggcgagggg agtcacagat ttagtgaaaa gattgattag
7501 gtttt
//