Typing tool
|
Complete norovirus genomes
LC699537 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5085 ORF2: 5066..6688 ORF3: 6688..7491LOCUS LC699537 7534 bp RNA linear VRL 12-MAR-2022 DEFINITION Norovirus GII.4 Hu/GII.4[P31]/414/Tokyo/2021/Japan genomic RNA, nearly complete genome. ACCESSION LC699537 VERSION LC699537.1 KEYWORDS . SOURCE Norovirus GII.4 ORGANISM Norovirus GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Amino acid mutations in the P2 domain in norovirus GII.4 Sydney [P31] JOURNAL Unpublished REFERENCE 2 (bases 1 to 7534) AUTHORS Yaoita,Y., Asakura,H., Nagano,M., Hayashi,Y., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Direct Submission JOURNAL Submitted (10-MAR-2022) Contact:Yu Yaoita Tokyo Metropolitan Institute of Public Health, Department of Microbiology; Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..7534 /organism="Norovirus GII.4" /mol_type="genomic RNA" /strain="Hu/GII.4[P31]/414/Tokyo/2021/Japan" /host="Homo sapiens" /db_xref="taxon:489821" /country="Japan:Tokyo" /collection_date="2021-06" gene <1..5085 /gene="POL" CDS <1..5085 /gene="POL" /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="BDG75415.1" /translation="NDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPP KEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVFGLPELTTVRQPEETNTA FSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVE LAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRR MIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLN ILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVEL VPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA NELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASP DIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIA ASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLN CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF PGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH ERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQ ALKNIAIKKCQIVYNGGTYTLEADGKGNVKVDKVQSATVQTNNELAGALHHLRCARIR YYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKD DEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE EYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEI RKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFIT STHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATL LIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY IYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAP KLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPP RPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESF TGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGRVKKRLLWGSDLATMIR CARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR DVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNS IAHWLLTLCALSEITDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLK PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP FETMIPHSQRPIQLMSLLGEAALHGPAFYSKVSKLVIAELKEGGMDFYVPRQEPMFRW MRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5066..6688 /gene="VP1" CDS 5066..6688 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="BDG75416.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICAFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRKRAL" gene 6688..7491 /gene="VP2" CDS 6688..7491 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="BDG75417.1" /translation="MAGTFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSAATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRMSPFMRGAHNIS FVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 aacgacgctt ccgctgccgc tgttgccaac agcaacaacg acatcgcaaa atcttcaagt 61 gacggtgtgt tttctaacat ggctgtcact tttaagcggg ccctcggggc gcggcctaaa 121 cagccgcccc cgaaggaaat accacccaga cccccgcgac cacccacacc agaattggtc 181 aaaaagatcc ctcctccccc acccaacggg gaggatgaac tagtggtctc ttacagcgcc 241 aaagatggcg ttttcggact gcctgagctc accactgtca gacaaccgga agaaaccaac 301 acggcgttta gtgtcccccc actcaaccaa agagagagca gagacgccaa ggagccatta 361 actggaacaa tcattgaaat gtgggatgga gaaatctacc attacggcct gtacgtggag 421 cgaggtctta tacttggtgt gcacaagcca ccagcagcca tcagcctcgc caaggtcgag 481 ctggcaccgc tctctttgtt ctggagacct gtatacactc cccagtacct catctctcca 541 gacactctta ggagattaca tggagagtca ttcccctaca ctgcatttga caacaattgc 601 tacgcctttt gttgttgggt gttagaccta aacgactcgt ggctaagcag gagaatgatt 661 cagagaacaa caggcttctt caggccgtac caggattgga acaggaaacc cctccctact 721 atggatgatt ccaaattaaa gaaggtagcc aacatattct tgtgcacttt gtcttcacta 781 ttcaccagac ccattaagga tataataggg aagttgaaac ctctcaacat ccttaatatc 841 ctggctacat gtgattggac cttcgcaggc atagtggaat ccttaatact cttggcagaa 901 ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc cttgctaggt 961 gattatgaac tgcaaggacc cgaggacctt gcagtggaac tggtcccaat agtgatgggg 1021 gggataggtt tggtgctagg atttaccaaa gagaaaatcg gaaagatgct gtcatccgct 1081 gcatccactt taagagcttg caaagacctt ggtgcatacg gactggaaat cttaaaattg 1141 gtcatgaagt ggttcttccc aaagaaagag gaagcaaatg aactggctat ggtgagatcc 1201 atcgaggatg cagtgctaga cctcgaggca attgaaaaca accacatgac cactctgctc 1261 aaagacaaag acagcttgac aacctacatg agaacccttg accttgagga ggagaaagcc 1321 agaaaactct caaccaaatc tgcttcaccc gatattgtgg gcacaattaa ctctcttctg 1381 gcaagaatcg ctgctgcacg ctccctagtg catcgggcga aagaagagct ctccagcagg 1441 ccgagacctg tcgttgtaat gatatcggga agaccaggga tagggaaaac tcatcttgcc 1501 agggagctgg ccaagaagat cgcggcctcc ctcacagggg accagcgtgt gggcctcatc 1561 ccacgcaatg gtgtcgacca ctgggacgca tacaagggcg aaagagttgt cctatgggac 1621 gactatggaa tgagcaaccc catccatgat gccctcaggt tgcaggagct tgctgacact 1681 tgtcccctca cgctaaattg tgacagaatt gagaacaagg gaaaagtctt tgacagtgat 1741 gccataatta tcaccaccaa cctggccaac ccagcaccac tggattatgt caactttgaa 1801 gcgtgctcga gacgcattga tttcctcgtg tacgcagaag cccctgaggt ggagaaggca 1861 aagcgcgact tcccaggtca acctgacatg tggaagaacg ctttcagtcc tgacttctca 1921 cacataaaac tgtcattggc tccacagggt ggttttgaca agaacggcaa caccccgcat 1981 ggaaaagggg tcatgaagac cctcaccact ggctccctca tcgcccgagc atcagggtta 2041 ctccatgaga ggctagatga atatgaattg caaggcccag ccctcaccac tttcaacttt 2101 gaccgcaaca aggtacttgc ttttagacag cttgctgctg aaaacaagta tgggctgatg 2161 gacacaatga gagttggaaa acagctcaag gatgtcaaga ctatgtcaga cctcaaacaa 2221 gcacttaaga acatcgcgat caagaagtgc cagatagtgt acaatggtgg cacctacaca 2281 cttgaggctg atggcaaggg caatgtgaaa gttgacaaag tgcaaagtgc cactgtgcag 2341 accaacaatg aactagccgg tgccctacac cacctaagat gcgctagaat cagatactat 2401 gttaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc tgcattcgtc 2461 accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc acaggtggaa 2521 gacacagaag agatggccaa caaagatggt tgcctaaaac ccaaagatga tgaagagttt 2581 gtcgtttcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa gtccggccgt 2641 ggcaagaagc acacagcctt ttcaagtaaa gggctcagtg atgaggagta cgatgagtac 2701 aaaagaatca gagaagaaag gaatggtaag tactccatag aagagtacct tcaggacaga 2761 gacaggtact acgaggaagt ggccattgcc agggcaaccg aagaggactt ctgtgaagaa 2821 gaagaggcca aaatccggca gaggattttc agaccaacaa ggaaacaacg caaagaagag 2881 agggcctccc tcggcttggt cacaggatct gaaatcagga agagaaaccc agaagacttc 2941 aaacccaagg gaaagctgtg ggctgatgat gacagaagtg ttgactataa tgagaaactc 3001 aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc aggctggggc 3061 ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca aggtgcaaaa 3121 gaattcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga attctgccga 3181 ttgagattcc caaagccaat cagaactgat gtgacgggca tgattctaga agaaggtgcg 3241 cccgagggga ccgtggccac actgctcatc aagagaccaa ctggagagct catgcctctg 3301 gcagccagaa tggggaccca tgcaactatg aaaattcagg ggcgcacagt tggagggcaa 3361 atgggtatgc tcctgacagg atccaacgcc aagagtatgg acctaggcac aacaccaggc 3421 gactgcggct gcccctacat ctacaagagg gggaatgact acgtggtcat aggggtccat 3481 acggccgctg cccgtggagg aaacactgtc atatgtgcca cccagggaag tgagggagag 3541 gccacacttg aaggaggtga cagtaaaggg acatactgtg gcgcgccaat cttgggccca 3601 gggagcgctc cgaagctcag caccaagact aagttttgga gatcatccac aacaccactc 3661 ccacctggca cctacgaacc agcctacctc ggtggcaaag accctagagt caaaggtggc 3721 ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc cagaggcaaa 3781 ccaccaaggc caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt ccttgagcaa 3841 acaattgatc caccccaaaa atggtcattt gcacaagctt gcgcatccct tgacaaaacc 3901 acctccagcg gccacccgca ccacatgcgg aaaaacgact gttggaatgg ggagtctttc 3961 acaggaaaat tggctgacca agcctccaag gccaacctaa tgtttgaaga gggaaagaac 4021 atgactccag tctacacagg tgcacttaaa gatgagttgg taaagaccga caaagtttat 4081 ggtagggtca agaagaggct tctgtggggt tcagatctgg cgaccatgat acggtgcgcc 4141 cgagctttcg gaggcctcat ggatgaactc aaggcacact gtgtcacact ccctgtcaga 4201 gttggtatga acatgaatga ggatggcccc atcatcttcg agaagcactc cagatataga 4261 taccactatg atgctgacta ttcccggtgg gactcaacac aacaaaggga tgtgctagca 4321 gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca gatagttgca 4381 gaagacctcc tctcccccag cgtgatggat gtgggtgact ttcaaatatc aataagtgag 4441 ggtctcccct ctggggtgcc ttgtacctcc cagtggaatt ccatcgccca ctggctcctc 4501 actctatgtg cactctctga aatcacggac ctgtcccctg atatcattca ggccaactcc 4561 cttttctcct tctatggtga tgatgagatt gtaagcacag acataaagtt ggacccagag 4621 aggctgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga caaaactgaa 4681 ggacctcttg ttatctctga agacctggat ggtctgacat tcctccggag aactgtgacc 4741 cgtgacccag ctggctggtt tggaaaattg gaacaaagtt caattcttag gcaaatgtac 4801 tggaccaggg gtcccaacca tgaagaccca tttgaaacaa tgataccaca ttcccaaaga 4861 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc attctacagc 4921 aaagttagta aattagttat tgcagagttg aaggaaggag gcatggattt ttacgtaccc 4981 agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat 5041 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca acccatctga 5101 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt 5161 tgttggtgcc gccattgcgg cacctgtagc aggccaacaa aatgtaattg acccctggat 5221 tagaaacaat tttgtacaag cccctggtgg agagtttaca gtgtccccta gaaacgctcc 5281 aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctact tatctcattt 5341 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa 5401 cgcgttcacc gcagggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg 5461 cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta ggcaactaga 5521 acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca atcaatcaaa 5581 tgaccccact attaagttga tagcaatgtt gtatacacca cttagggcta ataatgctgg 5641 ggatgatgtc ttcacagtct cttgccgagt tctcacgagg ccatcccccg attttgactt 5701 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt 5761 gactgttgag gagatgacca attcaagatt ccccatccct ttggaaaagt tgttcacggg 5821 tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg atggcgtgct 5881 cctaggcacc acccaactgt ctcctgtcaa catctgtgcc ttcagaggag atgtcaccca 5941 catcacaggt agtcataact acacaatgaa tttggcttct caaaattgga gcaattacga 6001 cccaacagaa gaaattccag cccctctagg gactccagac tttgtgggga agattcaagg 6061 catgcttacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag ccacagtgta 6121 cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaaa 6181 caatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg 6241 tggcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact caggcaggaa 6301 cactcctaat gtgcatctgg cccccgctgt agcccccact tttccgggtg agcaactcct 6361 cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggattgtct 6421 gctccctcag gaatgggtgc agtacttcta ccaagaggca gccccagcac aatctgatgt 6481 ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat gtaagcttca 6541 taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta tcccccccaa 6601 tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa 6661 cggagcgggg cgtaaacgtg cactataatg gctggaactt tctttgctgg attggcatct 6721 gatgtccttg gctctggact tggctccctt atcaatgctg gggctggggc catcaaccaa 6781 aaagttgagt ttgaaaataa tagaaaattg caacaagcat ccttccaatt tagcagcaat 6841 ctacagcagg cttccttcca acatgacaaa gagatgctcc aagcacaaat tgaggctacc 6901 aaaaggttac aacaggaaat gatgaaagtt aagcaggcaa tgctcttaga gggtgggttc 6961 tctgagacag atgcagcccg cggggcaatc aacgccccta tgacaaaagc tttggactgg 7021 agcgggacaa ggtactgggc tcctgatgct aggactacaa catacaatgc aggccgcttc 7081 tccacccccc aaccatcggg ggcgctgcca ggaagagcta accttaggga tgctgtccct 7141 gctcggggtt cctctagtaa gtcttctaat tcttctgctg ctacttctgt gtactcaaat 7201 caaactattt caacgagact tggttctaca gctggttctg gtaccagtgt ctcgagcttc 7261 ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggatgtc acctttcatg 7321 aggggggccc acaacatatc gtttgttacc ccaccatcta gcagatcctc tagccaaggc 7381 acagtctcaa ccgtgcctaa agagattttg gactcctgga ctggcgcttt taacacgcgc 7441 aggcagccac tcttcgctca cattcgtaag cgaggggagt cacgggtgta atgtgaaaag 7501 gcaaaattga tcatctttct tttctttagt gtct //