Typing tool
|
Complete norovirus genomes
LC699535 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5089 ORF2: 5070..6692 ORF3: 6692..7495LOCUS LC699535 7527 bp RNA linear VRL 12-MAR-2022 DEFINITION Norovirus GII.4 Hu/GII.4[P31]/211/Tokyo/2021/Japan genomic RNA, nearly complete genome. ACCESSION LC699535 VERSION LC699535.1 KEYWORDS . SOURCE Norovirus GII.4 ORGANISM Norovirus GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Amino acid mutations in the P2 domain in norovirus GII.4 Sydney [P31] JOURNAL Unpublished REFERENCE 2 (bases 1 to 7527) AUTHORS Yaoita,Y., Asakura,H., Nagano,M., Hayashi,Y., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Direct Submission JOURNAL Submitted (10-MAR-2022) Contact:Yu Yaoita Tokyo Metropolitan Institute of Public Health, Department of Microbiology; Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..7527 /organism="Norovirus GII.4" /mol_type="genomic RNA" /strain="Hu/GII.4[P31]/211/Tokyo/2021/Japan" /host="Homo sapiens" /db_xref="taxon:489821" /country="Japan:Tokyo" /collection_date="2021-06" gene <1..5089 /gene="POL" CDS <1..5089 /gene="POL" /note="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BDG75409.1" /translation="SNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPP PKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVFGLPELTTVRQPEETNT AFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKV ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSR RMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPL NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE LVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE ANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSAS PDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD FPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL HERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLK QALKNIAIKKCQIVYNGGTYTLEADGKGNVKVDKVQSATVQTNNELAGALHHLRCARI RYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPK DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE IRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI TSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVAT LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP PRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGRVKKRLLWGSDLATMI RCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ RDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWN SIAHWLLTLCALSEITDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGL KPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED PFETMIPHSQRPIQLMSLLGEAALHGPAFYSKVSKLVIAELKEGGMDFYVPRQEPMFR WMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5070..6692 /gene="VP1" CDS 5070..6692 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="BDG75410.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICAFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRKRAL" gene 6692..7495 /gene="VP2" CDS 6692..7495 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="BDG75411.1" /translation="MAGTFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGVIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSAATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRMSPFMRGAHNIS FVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtctaacgac gcttccgctg ccgctgttgc caacagcaac aacgacatcg caaaatcttc 61 aagtgacggt gtgttttcta acatggctgt cacttttaag cgggccctcg gggcgcggcc 121 taaacagccg cccccgaagg aaataccacc cagacccccg cgaccaccca caccagaatt 181 ggtcaaaaag atccctcctc ccccacccaa cggggaggat gaactagtgg tctcttacag 241 cgccaaagat ggcgttttcg gactgcctga gctcaccact gtcagacaac cggaagaaac 301 caacacggcg tttagtgtcc ccccactcaa ccaaagagag agcagagacg ccaaggagcc 361 attaactgga acaatcattg aaatgtggga tggagaaatc taccattacg gcctgtacgt 421 ggagcgaggt cttatacttg gtgtgcacaa gccaccagca gccatcagcc tcgccaaggt 481 cgagctggca ccgctctctt tgttctggag acctgtatac actccccagt acctcatctc 541 tccagacact cttaggagat tacatggaga gtcattcccc tacactgcat ttgacaacaa 601 ttgctacgcc ttttgttgtt gggtgttaga cctaaacgac tcgtggctaa gcaggagaat 661 gattcagaga acaacaggct tcttcaggcc gtaccaggat tggaacagga aacccctccc 721 tactatggat gattccaaat taaagaaggt agccaacata ttcttgtgca ctttgtcttc 781 actattcacc agacccatta aggatataat agggaagttg aaacctctca acatccttaa 841 tatcctggct acatgtgatt ggaccttcgc aggcatagtg gaatccttaa tactcttggc 901 agaactcttt ggagttttct ggacaccccc agatgtgtct gcgatgatcg cccccttgct 961 aggtgattat gaactgcaag gacccgagga ccttgcagtg gaactggtcc caatagtgat 1021 gggggggata ggtttggtgc taggatttac caaagagaaa atcggaaaga tgctgtcatc 1081 cgctgcatcc actttaagag cttgtaaaga ccttggtgca tacggactgg aaatcttaaa 1141 attggtcatg aagtggttct tcccaaagaa agaggaagca aatgaactgg ctatggtgag 1201 atccatcgag gatgcagtgc tagacctcga ggcaattgaa aacaaccaca tgaccactct 1261 gctcaaagac aaagacagct tgacaaccta catgagaacc cttgaccttg aggaggagaa 1321 agccagaaaa ctctcaacca aatctgcttc acccgatatt gtgggcacaa ttaactctct 1381 tctggcaaga atcgctgctg cacgctccct agtgcatcgg gcgaaagaag agctctccag 1441 caggccgaga cctgtcgttg taatgatatc gggaagacca gggataggga aaactcatct 1501 tgccagggag ctggccaaga agatcgcggc ctccctcaca ggggaccagc gtgtgggcct 1561 tatcccacgc aatggtgtcg accactggga cgcatacaag ggcgaaagag ttgtcctatg 1621 ggacgactat ggaatgagca accccatcca tgatgccctc aggttgcagg agcttgctga 1681 cacttgtccc ctcacgctaa attgtgacag aattgagaac aagggaaaag tctttgacag 1741 tgatgccata attatcacca ccaacctggc caacccagca ccactggatt atgtcaactt 1801 tgaagcgtgc tcgagacgca ttgatttcct cgtgtacgca gaagcccctg aggtggagaa 1861 ggcaaagcgc gacttcccag gtcaacctga catgtggaag aacgctttca gtcctgactt 1921 ctcacacata aaactgtcat tggctccaca gggtggtttt gacaagaacg gcaacacccc 1981 gcatggaaaa ggggtcatga agaccctcac cactggctcc ctcatcgccc gagcatcagg 2041 gttactccat gagaggctag atgaatatga attgcaaggc ccagccctca ccaccttcaa 2101 ctttgaccgc aacaaggtac ttgcttttag acagcttgct gctgaaaaca agtatgggct 2161 gatggacaca atgagagttg gaaaacagct caaggatgtc aagactatgt cagacctcaa 2221 acaagcactt aagaacatcg cgatcaagaa gtgccagata gtgtacaatg gtggcaccta 2281 cacacttgag gctgatggca agggcaatgt gaaagttgac aaagtgcaaa gtgccactgt 2341 gcagaccaac aatgaactag ccggtgccct acaccaccta agatgcgcta gaatcagata 2401 ctatgttaag tgcgtccagg aggcactgta ttccatcatc caaatcgctg gggctgcatt 2461 cgtcaccacg cgcatcgcta agcgcatgaa tatacagaat ctctggtcca agccacaggt 2521 ggaagacaca gaagagatgg ccaacaaaga tggttgccta aaacccaaag atgatgaaga 2581 gtttgtcgtt tcatccgacg acatcaaaac tgagggcaag aaagggaaga acaagtccgg 2641 ccgtggcaag aagcacacag ccttttcaag taaagggctc agtgatgagg agtacgatga 2701 gtacaaaaga atcagagaag aaaggaatgg taagtactcc atagaagagt accttcagga 2761 cagagacagg tactacgagg aagtggccat tgccagggca accgaagagg acttctgtga 2821 agaagaagag gccaaaatcc ggcagaggat tttcagacca acaaggaaac aacgcaaaga 2881 agagagggcc tccctcggct tggtcacagg atctgaaatc aggaagagaa acccagaaga 2941 cttcaaaccc aagggaaagc tgtgggctga tgatgacaga agtgttgact ataatgagaa 3001 actcaacttt gaggccccac caagcatctg gtcgcggata gtcaactttg gttcaggctg 3061 gggcttctgg gtctccccca gtctgtttat aacatcaacc catgtcatac cccaaggtgc 3121 aaaagaattc ttcggagtcc ctatcaagca aatccagata cacaagtcag gtgaattctg 3181 ccgattgaga ttcccaaagc caatcagaac tgatgtgacg ggcatgattc tagaagaagg 3241 tgcgcccgag gggaccgtgg ccacactgct catcaagaga ccaactggag agctcatgcc 3301 tctggcagcc agaatgggga cccatgcaac catgaaaatt caggggcgca cagttggagg 3361 gcaaatgggt atgctcctga caggatccaa cgccaagagt atggacctag gcacaacacc 3421 aggcgactgc ggctgcccct acatctacaa gagggggaat gactacgtgg tcataggggt 3481 ccatacggcc gctgcccgtg gaggaaacac tgtcatatgt gccacccagg gaagtgaggg 3541 agaggccaca cttgaaggag gtgacagtaa agggacatac tgtggcgcgc caatcttggg 3601 cccagggagc gctccgaagc tcagcaccaa gactaagttt tggagatcat ccacaacacc 3661 actcccacct ggcacctacg aaccagccta cctcggtggc aaagacccta gagtcaaagg 3721 tggcccttca ttgcaacaag ttatgaggga ccagctgaag ccattcacag aacccagagg 3781 caaaccacca aggccaaatg tgttggaagc tgccaagaaa accatcatca atgtccttga 3841 gcaaacaatt gatccacccc aaaaatggtc atttgcacaa gcttgcgcat cccttgacaa 3901 aaccacctcc agcggccacc cgcaccacat gcggaaaaac gactgttgga atggggagtc 3961 tttcacagga aaattagctg accaagcctc caaggccaac ctaatgtttg aagagggaaa 4021 gaacatgact ccagtctaca caggtgcact taaagatgag ttggtaaaga ccgacaaagt 4081 ttatggtagg gtcaagaaga ggcttctgtg gggttcagat ctggcgacca tgatacggtg 4141 cgcccgagct ttcggaggcc tcatggatga actcaaggca cactgtgtca cactccctgt 4201 cagagttggt atgaacatga atgaggatgg ccccatcatc ttcgagaagc actccagata 4261 tagataccac tatgatgctg actattcccg gtgggactca acacaacaaa gggatgtgct 4321 agcagcagca ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt 4381 tgcagaagac ctcctctccc ccagcgtgat ggatgtgggt gactttcaaa tatcaataag 4441 tgagggtctc ccctctgggg tgccttgtac ctcccagtgg aattccatcg cccactggct 4501 cctcactcta tgtgcactct ctgaaatcac ggacctgtcc cctgatatca ttcaggccaa 4561 ctcccttttc tccttctatg gtgatgatga gattgtaagc acagacataa agttggaccc 4621 agagaggctg acagcaaaac tcaaggagta cgggctaaaa ccaacccgcc ccgacaaaac 4681 tgaaggacct cttgttatct ctgaagacct ggatggtctg acattcctcc ggagaactgt 4741 gacccgtgac ccagctggct ggtttggaaa attggaacaa agttcaattc ttaggcaaat 4801 gtactggacc aggggtccca accatgaaga cccatttgaa acaatgatac cacattccca 4861 aagacccata caattgatgt ccttgctggg cgaggctgca ctccacggcc cggcattcta 4921 cagcaaagtt agtaaattag ttattgcaga gttgaaggaa ggaggcatgg atttttacgt 4981 acccagacaa gagccaatgt tcagatggat gagattctca gatctgagca cgtgggaggg 5041 cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgagtgac gccaacccat 5101 ctgatgggtc cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctctggagc 5161 ccgttgttgg tgccgccatt gcggcacctg tagcgggcca acaaaatgta attgacccct 5221 ggattagaaa caattttgta caagcccctg gtggagagtt tacagtgtcc cctagaaacg 5281 ctccaggtga aatactatgg agcgcgccct tgggccctga tctaaatccc tacttatctc 5341 atttggccag aatgtacaat ggttatgcag gtggttttga agtgcaggta attctcgcgg 5401 ggaacgcgtt caccgcaggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg 5461 aaggcttgag ccccagccag gtcactatgt tcccccatat agtagtagat gttaggcaac 5521 tagaacctgt gttgattccc ttacccgatg ttaggaataa tttctatcat tacaatcaat 5581 caaatgaccc cactattaag ttgatagcaa tgttgtatac accacttagg gctaataatg 5641 ctggggatga tgtcttcaca gtctcttgcc gagttctcac gaggccatcc cccgattttg 5701 acttcatatt tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag 5761 ttttgactgt cgaggagatg accaattcaa gattccccat ccctttggaa aagttgttca 5821 cgggtcccag cagtgccttt gttgtccaac cacaaaacgg taggtgcacg actgatggcg 5881 tgctcctagg caccacccaa ctgtctcctg tcaacatctg tgccttcaga ggagatgtca 5941 cccacatcac aggtagtcat aactacacaa tgaatttggc ttctcaaaat tggagcaatt 6001 acgacccaac agaagaaatt ccagcccctc tagggactcc agactttgtg gggaagattc 6061 aaggcatgct tacccaaacc acaaggacag atggctcaac acgcggccac aaagccacag 6121 tgtacactgg gagcgccgac tttgctccaa aactgggtag agttcaattt gaaactgaca 6181 caaacaatga ttttgaagct aaccaaaaca caaagttcac cccagttggt gtcatccaag 6241 atggtggcac cacccaccga aatgaacccc aacagtgggt gctcccaagt tactcaggca 6301 ggaacactcc taatgtgcat ctggcccccg ctgtagcccc cacttttccg ggtgagcaac 6361 tcctcttctt cagatccacc atgcccggat gcagcgggta ccccaacatg gatttggatt 6421 gtctgctccc tcaggaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg 6481 atgtggctct gctaagattt gtgaatccag acacaggtag ggttttgttt gaatgtaagc 6541 ttcataaatc aggctatgtt acagtggctc acactggcca acatgatttg gttatccccc 6601 ccaatggtta ttttaggttt gattcctggg tcaaccagtt ttacacgctt gcccccatgg 6661 gaaacggagc ggggcgtaaa cgtgcactat aatggctgga actttctttg ctggattggc 6721 atctgatgtc cttggctctg gacttggctc ccttatcaat gctggggctg gggccatcaa 6781 ccaaaaagtt gagtttgaaa ataatagaaa attgcaacaa gcatccttcc aatttagcag 6841 caatctacag caggcttcct tccaacatga caaagagatg ctccaagcac aaattgaggc 6901 taccaaaagg ttacaacagg aaatgatgaa agttaagcag gcaatgctct tagagggtgg 6961 gttctctgag acagatgcag cccgcggggt aatcaacgcc cctatgacaa aagctttgga 7021 ctggagcggg acaaggtact gggctcctga tgctaggact acaacataca atgcaggccg 7081 cttctccacc ccccaaccat cgggggcgct gccaggaaga gctaacctta gggatgctgt 7141 ccctgctcgg ggttcctcta gtaagtcttc taattcttct gctgctactt ctgtgtactc 7201 aaatcaaact atttcaacga gacttggttc tacagctggt tctggtacca gtgtctcgag 7261 cttcccgtca actgcaagga ctaggagctg ggttgaggat caaagtagga tgtcaccttt 7321 catgaggggg gcccacaaca tatcgtttgt caccccacca tctagcagat cctctagcca 7381 aggcacagtc tcaaccgtgc ctaaagagat tttggactcc tggactggcg cttttaacac 7441 gcgcaggcag ccactcttcg ctcacattcg taagcgaggg gagtcacggg tgtaatgtga 7501 aaagacaaaa ttgatcatct ttctttt //