Typing tool
|
Complete norovirus genomes
LC699532 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5085 ORF2: 5066..6688 ORF3: 6688..7494LOCUS LC699532 7544 bp RNA linear VRL 12-MAR-2022 DEFINITION Norovirus GII.4 Hu/GII.4[P31]/2597/Tokyo/2020/Japan genomic RNA, nearly complete genome. ACCESSION LC699532 VERSION LC699532.1 KEYWORDS . SOURCE Norovirus GII.4 ORGANISM Norovirus GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Amino acid mutations in the P2 domain in norovirus GII.4 Sydney [P31] JOURNAL Unpublished REFERENCE 2 (bases 1 to 7544) AUTHORS Yaoita,Y., Asakura,H., Nagano,M., Hayashi,Y., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Direct Submission JOURNAL Submitted (10-MAR-2022) Contact:Yu Yaoita Tokyo Metropolitan Institute of Public Health, Department of Microbiology; Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..7544 /organism="Norovirus GII.4" /mol_type="genomic RNA" /strain="Hu/GII.4[P31]/2597/Tokyo/2020/Japan" /host="Homo sapiens" /db_xref="taxon:489821" /country="Japan:Tokyo" /collection_date="2020-02" gene <1..5085 /gene="POL" CDS <1..5085 /gene="POL" /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="BDG75400.1" /translation="NDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPP KEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTA FSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVE LAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRR MIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLN ILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVEL VPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA NELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASP DIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIA ASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLN CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF PGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH ERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQ ALKNIAIKKCQIVYNGGTYTLEADGKGNVKVDKVQSATVQTNNELAGALHHLRCARIR YYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKD DEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE EYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEI RKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFIT STHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATL LIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY IYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAP KLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPP RPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESF TGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIR CARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR DVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNS IAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLK PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP FETMIPHSQRPIQLMSLLGEAALHGPAFYSKVSKLVIAELKEGGMDFYVPRQEPMFRW MRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5066..6688 /gene="VP1" CDS 5066..6688 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="BDG75401.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICAFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6688..7494 /gene="VP2" CDS 6688..7494 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="BDG75402.1" /translation="MAGTFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGAVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 aacgacgctt ccgctgccgc tgttgccaac agcaacaacg acatcgcaaa atcttcaagt 61 gacggtgtgt tttctaacat ggctgtcact tttaagcggg ccctcggggc gcggcctaaa 121 cagccgcccc cgaaggaaat accacccaga cccccgcgac cacccacacc agaattggtc 181 aaaaagatcc ctcctccccc acccaacggg gaggatgaac tagtggtctc ttacagcgcc 241 aaagatggcg tttccggact gcctgagctc accactgtca gacaaccgga agaaaccaac 301 acggcgttca gtgtcccccc actcaaccaa agagagagca gggacgccaa ggagccatta 361 actggaacaa tcattgaaat gtgggatgga gaaatctacc attacggcct gtacgtggaa 421 cgaggtctta tacttggtgt gcacaagcca ccagcagcca tcagcctcgc caaggtcgag 481 ctggcaccgc tctctttgtt ctggagacct gtatacaccc cccagtacct catctctcca 541 gacactctta ggagattaca tggagagtca ttcccctaca ctgcatttga caacaattgc 601 tacgcctttt gttgttgggt attagaccta aacgactcat ggctaagcag gagaatgatt 661 cagagaacaa caggcttctt caggccgtac caggattgga acaggaaacc cctccccact 721 atggatgatt ccaaattaaa gaaggtagcc aacatattct tgtgcacttt gtcttcacta 781 ttcaccagac ccattaagga cataataggg aagttgaaac ctctcaacat ccttaatatt 841 ctggctacat gtgattggac cttcgcaggc atagtggaat ccttaatact cttggcagaa 901 ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc cttgctaggt 961 gattatgaac tgcaaggacc cgaggacctt gcagtggaac tggtcccaat agtgatgggg 1021 gggataggtt tggtgctagg atttaccaaa gagaaaatcg gaaagatgct gtcatccgct 1081 gcatccactt taagagcttg taaagacctt ggtgcatacg gactggaaat cttaaaattg 1141 gtcatgaagt ggttcttccc aaagaaagag gaagcaaatg aactggctat ggtgagatcc 1201 atcgaggatg cagtactaga cctcgaggca attgaaaaca accacatgac caccctgctc 1261 aaagacaaag acagcttgac aacctacatg agaacccttg accttgagga ggagaaagcc 1321 agaaaactct caaccaaatc tgcttcaccc gatattgtgg gcacaatcaa ctctcttctg 1381 gcaagaatcg ctgctgcacg ctccctagtg catcgggcga aagaagagct ctccagcagg 1441 ccgagacctg tcgttgtaat gatatcggga agaccaggga tagggaaaac tcaccttgcc 1501 agggagctgg ccaagaagat agcggcctcc ctcacagggg accagcgtgt gggccttatc 1561 ccacgcaatg gtgtcgacca ctgggacgca tacaagggcg aaagagttgt cctatgggac 1621 gactatggaa tgagcaaccc catccatgat gccctcaggt tgcaggagct tgctgacact 1681 tgtcccctca cgctaaattg tgacagaatt gagaacaagg gaaaagtctt tgacagtgat 1741 gccataatta tcaccaccaa cctggccaac ccagcaccac tggattatgt caactttgaa 1801 gcgtgctcga gacgcattga tttcctcgtg tacgcagaag cccctgaggt ggagaaggca 1861 aagcgcgact tcccaggtca acctgacatg tggaagaacg ctttcagtcc tgacttctca 1921 cacataaaac tgtcattggc tccacagggt ggttttgaca agaacggcaa caccccgcat 1981 ggaaaagggg tcatgaagac cctcaccact ggctccctca tcgcccgagc atcagggtta 2041 ctccatgaga ggctagatga atatgaattg caaggcccag ccctcaccac tttcaacttt 2101 gaccgcaaca agatacttgc ttttagacag cttgctgctg aaaacaagta tgggctgatg 2161 gacacaatga gagttggaaa acagctcaag gatgtcaaga ctatgtcaga cctcaaacaa 2221 gcacttaaga acatcgcgat caagaagtgc cagatagtgt acaatggtgg cacctacaca 2281 cttgaggctg atggcaaggg caatgtgaaa gttgacaaag tgcaaagtgc cactgtgcag 2341 accaacaatg aactagccgg tgccctacac cacctaagat gcgctagaat cagatactat 2401 gttaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc tgcattcgtc 2461 accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc acaggtggaa 2521 gacacagaag agatggccaa caaagatggt tgcctaaaac ccaaagatga tgaagagttt 2581 gtcgtttcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa gtccggccgt 2641 ggcaagaagc acacagcctt ttcaagtaaa gggctcagtg atgaggagta cgatgagtac 2701 aaaagaatca gagaagaaag gaatggtaag tactccatag aagagtacct tcaggacaga 2761 gacaggtact acgaggaagt ggccattgcc agggcaaccg aagaggactt ctgtgaagaa 2821 gaagaggcca aaatccggca gaggattttc agaccaacaa ggaaacaacg caaagaagag 2881 agggcctctc tcggcttggt cacaggatct gaaatcagga agagaaaccc agaagacttc 2941 aaacccaagg gaaagctgtg ggctgatgat gacagaagtg ttgactacaa tgagaaactc 3001 aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc aggctggggc 3061 ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca aggtgcaaaa 3121 gaattcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga attctgccga 3181 ttgagattcc caaagccaat cagaactgat gtgacgggca tgattctaga agaaggtgcg 3241 cccgagggga ccgtggccac actgctcatc aagagaccaa ctggagagct catgcctctg 3301 gcagccagaa tggggaccca tgcaaccatg aaaattcagg ggcgcacagt tggagggcaa 3361 atgggtatgc tcctgacagg atccaacgcc aagagtatgg acctaggcac aacaccaggc 3421 gactgcggct gcccctacat ctacaagagg gggaatgact atgtggtcat aggggtccat 3481 acggccgctg cccgtggagg aaacactgtc atatgtgcca cccagggaag tgagggagag 3541 gccacacttg aaggaggtga cagtaaaggg acatactgtg gcgcgccaat cttgggccca 3601 gggagcgctc cgaagctcag caccaagact aagttttgga gatcatccac aacaccactc 3661 ccacctggca cctacgaacc agcctacctc ggtggcaaag accctagagt caaaggtggc 3721 ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc cagaggcaaa 3781 ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt ccttgagcaa 3841 acaattgatc caccccaaaa atggtcattt gcgcaagctt gcgcatccct tgacaaaacc 3901 acctccagcg gccacccgca ccacatgcgg aaaaacgact gttggaatgg ggagtctttc 3961 acaggaaaat tggctgacca agcctccaag gccaacctaa tgtttgaaga gggaaagaac 4021 atgactccag tctacacagg tgcacttaaa gatgagttgg taaagaccga taaagtttat 4081 ggtaaggtca agaagaggct tctgtggggt tcagatctgg cgaccatgat acggtgcgcc 4141 cgagctttcg gaggcctcat ggatgaactc aaggcacact gtgtcacact ccctgtcaga 4201 gttggtatga acatgaatga ggatggcccc atcatcttcg agaagcactc cagatataga 4261 taccactatg atgctgacta ttcccggtgg gactcaacac aacaaaggga tgtgctagca 4321 gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca gatagttgca 4381 gaagacctcc tctcccccag cgtgatggat gtgggtgact ttcaaatatc aataagtgag 4441 ggtctcccct ctggggtgcc ttgtacctcc cagtggaatt ccatcgccca ctggctcctc 4501 actctatgtg cactctctga agtcacggac ctgtcccctg atatcattca ggccaactcc 4561 cttttctcct tctatggtga tgatgagatt gtaagcacag acataaagtt ggacccagag 4621 aggctgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga caaaactgaa 4681 ggaccccttg ttatctctga agacctggat ggtctgacat tcctccggag aactgtgacc 4741 cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattcttag gcaaatgtac 4801 tggaccaggg gtcccaacca tgaagatcca tttgaaacaa tgataccaca ttcccaaaga 4861 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc attctacagc 4921 aaagttagca aattagttat tgcagagttg aaggaaggag gcatggattt ttacgtaccc 4981 agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat 5041 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca acccatctga 5101 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt 5161 tgttggtgcc gccatagcgg cacctgtagc gggccaacaa aatgtaattg acccctggat 5221 tagaaacaat tttgtacaag cccctggtgg agagtttaca gtgtccccta gaaacgctcc 5281 aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctact tatctcattt 5341 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa 5401 cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg 5461 cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta ggcaactaga 5521 acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca atcagtcaaa 5581 tgaccccact attaagttga tagcaatgtt gtatacacca cttagggcta ataatgctgg 5641 ggatgatgtc ttcacagttt cttgccgagt tctcacgagg ccatcccccg attttgactt 5701 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt 5761 gactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt tgttcacggg 5821 tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg atggcgtgct 5881 cctaggcacc acccaactgt ctcctgtcaa catctgcgcc ttcagaggag atgtcaccca 5941 catcacaggt agtcataact acacaatgaa tttggcttct caaaattgga gcaattacga 6001 cccaacagaa gaaattccag cccctctagg gactccagac tttgtgggga agattcaagg 6061 catgcttacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag ccacagtgta 6121 cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaaa 6181 caatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg 6241 tggcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact caggcaggaa 6301 cactcctaat gtgcatctgg cccccgctgt agcccccact tttccgggtg agcaactcct 6361 cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggattgtct 6421 gctcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac aatctgatgt 6481 ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat gtaagcttca 6541 taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta tcccccccaa 6601 tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa 6661 tggagcgggg cgtagacgtg cactataatg gctggaactt tctttgctgg attggcatct 6721 gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc catcaaccaa 6781 aaagttgagt ttgaaaataa tagaaaattg caacaagcat ccttccaatt tagcagcaat 6841 ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat tgaggctacc 6901 aaaaggttac aacaggaaat gatgaaagtt aagcaggcaa tgctcttgga gggtgggttc 6961 tctgagacag atgcagcccg cggggcaatc aacgccccta tgacaaaagc tttggactgg 7021 agcgggacaa ggtactgggc tcctgatgct aggactacaa catacaatgc aggccgcttt 7081 tccacccccc aaccatcggg ggcgctgcca ggaagagcta atcttaggga tgctgtcccc 7141 gctcggggtt cctctagtaa gtcttctaat tcttctactg ctacttctgt gtactcaaat 7201 caaactattt caacgagact tggttctaca gctggttctg gtaccagtgt ctcgagcttc 7261 ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggaattt gtcacctttt 7321 atgagggggg cccacaacat atcgtttgtc accccaccat ctagcagatc ctctagccaa 7381 ggcgcagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc tttcaacacg 7441 cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggt gtaatgtgaa 7501 aagacaaaat tgatcatctt tcttttcttt agtgtctttt aaaa //