Typing tool
|
Complete norovirus genomes
LC699528 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7493LOCUS LC699528 7505 bp RNA linear VRL 12-MAR-2022 DEFINITION Norovirus GII.4 Hu/GII.4[P31]/2260/Tokyo/2020/Japan genomic RNA, nearly complete genome. ACCESSION LC699528 VERSION LC699528.1 KEYWORDS . SOURCE Norovirus GII.4 ORGANISM Norovirus GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Amino acid mutations in the P2 domain in norovirus GII.4 Sydney [P31] JOURNAL Unpublished REFERENCE 2 (bases 1 to 7505) AUTHORS Yaoita,Y., Asakura,H., Nagano,M., Hayashi,Y., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Suzuki,J. and Sadamasu,K. TITLE Direct Submission JOURNAL Submitted (10-MAR-2022) Contact:Yu Yaoita Tokyo Metropolitan Institute of Public Health, Department of Microbiology; Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..7505 /organism="Norovirus GII.4" /mol_type="genomic RNA" /strain="Hu/GII.4[P31]/2260/Tokyo/2020/Japan" /host="Homo sapiens" /db_xref="taxon:489821" /country="Japan:Tokyo" /collection_date="2020-01" gene <1..5084 /gene="POL" CDS <1..5084 /gene="POL" /note="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="BDG75388.1" /translation="DASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPK EIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAF SVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVEL APLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNI LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV PIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN ELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPD IVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAA SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP GQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE RLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQA LKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRY YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDIEEMANKDGCLKPKDD EEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR KRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITS THVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVAGMILEEGAPEGTVATLL IKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPK LSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR PNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRC ARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRD VLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSI AHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKP TRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPF ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" gene 5065..6687 /gene="VP1" CDS 5065..6687 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="BDG75389.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVLALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWINQFYTLAPMGNGAGRRRAL" gene 6687..7493 /gene="VP2" CDS 6687..7493 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="BDG75390.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSAARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 acgacgcttc cgctgccgct gttgccaaca gcaacaacga catcgcaaaa tcttcaagtg 61 acggtgtgtt ttctaacatg gctgtcactt ttaagcgggc cctcggggcg cggcctaaac 121 agccgccccc gaaggaaata ccacccagac ccccgcgacc acccacacca gaattggtca 181 aaaagatccc tcctccccca cccaacgggg aggatgaact agtggtctct tacaacgcca 241 aagatggcgt ttccggactg cctgagctca ccactgtcag acaaccggaa gaaaccaaca 301 cggcgttcag tgtcccccca ctcaaccaaa gggagagcag ggacgccaag gagccactaa 361 ctgggacaat cattgaaatg tgggatggag aaatctacca ttacggcctg tacgtggaac 421 gaggtcttat acttggtgtg cacaagccac cagcagccat cagcctcgct aaggtcgagc 481 tggcaccact ctctttgttc tggagacctg tatacacccc ccagtacctt atctctccag 541 acactcttag gagattacat ggagagtcat tcccctacac tgcatttgac aacaattgct 601 acgccttttg ttgttgggta ttagacctaa acgactcatg gctaagcagg agaatgattc 661 agagaacaac aggcttcttt aggccgtacc aggattggaa caggaaaccc ctccccacta 721 tggatgattc caaattaaag aaggtagcca acatattttt gtgcactttg tcttcactat 781 tcaccaggcc catcaaggac ataataggga agttgaaacc tctcaacatc cttaatattc 841 tggctacatg tgattggact ttcgcaggca tagtggaatc cttaatactc ttggcagaac 901 tctttggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc ttgctaggtg 961 attatgaact gcaaggaccc gaggaccttg cagtggaact ggtcccaata gtgatggggg 1021 ggataggttt ggttctagga tttaccaaag agaagatcgg aaagatgctg tcatcagctg 1081 catccacttt aagagcttgt aaagaccttg gtgcatacgg actggaaatt ttaaaattgg 1141 tcatgaagtg gttcttccca aagaaagagg aagcaaatga actggctatg gtgagatcca 1201 tcgaggatgc agtactagac ctcgaggcaa ttgaaaacaa ccacatgacc accctgctca 1261 aagacaaaga cagtttgaca acctacatga gaacccttga ccttgaggag gagaaagcca 1321 gaaaactctc aaccaaatct gcttcacccg atattgtggg cacaatcaac tctcttctgg 1381 caagaatcgc tgctgcacgc tccttagtgc atcgggcgaa agaagagctc tccagcaggc 1441 cgagacctgt cgttgtaatg atatcgggaa gaccagggat agggaaaact caccttgcca 1501 gggagctggc caagaagatc gcggcctccc tcacagggga ccagcgtgtg ggccttatcc 1561 cacgcaatgg tgtcgaccac tgggacgcat acaagggcga aagggtcgtc ctatgggacg 1621 actatggaat gagcaacccc atccatgacg cccttaggtt gcaggagctt gctgacactt 1681 gccccctcac actaaattgt gacagaattg agaacaaagg aaaagtcttt gacagtgacg 1741 ccataattat caccaccaac ctggccaacc cagcaccact ggattatgtc aactttgaag 1801 cgtgctcgag acgcattgat ttcctcgtgt acgcagaagc ccctgaggtg gagaaggcaa 1861 agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc tttcagtcct gacttctcac 1921 acataaaact gtcattggct ccacagggtg gttttgacaa gaacggcaac accccgcatg 1981 gaaaaggggt catgaagacc ctcaccactg gctccctcat cgcccgagca tcagggttac 2041 tccatgagag gctagatgaa tatgaattgc aaggcccagc cctcaccact ttcaactttg 2101 accgtaacaa gatacttgct tttagacagc tcgctgctga aaacaagtat gggctgatgg 2161 acacaatgag agttggaaaa cagctcaagg atgtcaagac tatgtcagac ctcaaacagg 2221 cactcaagaa catcgcgatc aagaagtgcc agatagtgta caatggtggc acctacacac 2281 ttgaggctga tggcaagggc agtgtgaaag ttgacaaagt gcaaagtgcc actgtgcaga 2341 ccaacaatga actagccggt gccctacacc acctaagatg cgctagaatc agatactatg 2401 ttaagtgcgt ccaggaggca ctgtattcca tcatccaaat cgctggggct gcattcgtca 2461 ccacgcgcat cgctaagcgc atgaatatac agaatctctg gtccaagcca caggtggaag 2521 acatagaaga gatggccaac aaagatggtt gcctaaaacc caaagatgat gaagagtttg 2581 tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg gaagaacaag tccggccgtg 2641 gcaagaagca cacagccttt tcaagtaaag ggctcagtga tgaggagtat gatgagtaca 2701 agagaatcag agaagaaagg aatggtaagt actccataga agagtacctt caggacagag 2761 acaggtacta cgaggaggtg gccattgcta gggcaaccga agaggacttc tgtgaggagg 2821 aggaggccaa aatccggcag aggattttca gaccaacgag gaaacaacgc aaagaagaga 2881 gggcttctct cggcttggtc acaggctctg aaatcaggaa gagaaaccca gaagacttca 2941 aacccaaggg aaagctgtgg gctgatgacg acagaagtgt tgactacaat gagaaactca 3001 actttgaggc cccaccaagc atctggtcgc ggatagtcaa ctttggttca ggctggggct 3061 tctgggtctc ccccagtctg tttataacat caacccatgt cataccccaa ggtgcaaagg 3121 agttcttcgg agtccctatc aagcaaatcc agatacacaa gtcaggtgaa ttctgccgat 3181 tgagattccc aaagccaatc agaaccgatg tggcgggcat gattctagaa gaaggtgcgc 3241 ccgaggggac cgtggccaca ctgctcatca agagaccaac tggagagctc atgcctctgg 3301 cagccagaat ggggacccat gcaaccatga aaattcaggg gcgcacagtt ggagggcaaa 3361 tgggtatgct cttgacagga tccaacgcca agagtatgga cctaggcaca acaccaggcg 3421 actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggtcata ggggtccata 3481 cggctgctgc ccgtggagga aacactgtca tatgtgccac ccagggaagt gagggagagg 3541 ccacacttga aggaggtgac agtaaaggga catactgtgg cgcaccaatc ttgggcccag 3601 ggagcgctcc gaagctcagc accaagacca agttttggag atcatccaca acaccactcc 3661 cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc aaaggtggcc 3721 cttcattgca acaagttatg agggaccagc tgaagccatt cacagaaccc agaggcaaac 3781 caccaagacc aaatgtgttg gaagctgcca agaaaaccat catcaatgtc cttgagcaaa 3841 caattgatcc accccaaaaa tggtcatttg cgcaagcttg cgcatccctt gacaaaacca 3901 cctccagcgg ccacccgcac cacatgcgga aaaacgactg ttggaatggg gagtccttca 3961 caggaaagtt ggctgaccaa gcctccaagg ccaacctaat gtttgaagag ggaaagaaca 4021 tgactccagt ctacacaggt gcacttaaag atgagttggt aaagaccgat aaagtttatg 4081 gtaaggtcaa gaagaggctt ctatggggtt cagatctggc gaccatgata cggtgcgccc 4141 gagcttttgg aggcctcatg gatgaactca aggcacactg tgttacactc cctgtcagag 4201 ttggtatgaa catgaatgag gatggcccca tcatcttcga gaagcactcc agatatagat 4261 atcattatga tgctgactac tcccggtggg actcaacaca acaaagggat gtgctagcag 4321 cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag atagttgcag 4381 aagacctcct ttcccctagc gtgatggatg tgggtgactt tcaaatatca ataagtgagg 4441 gtctcccctc tggggtgcct tgcacctccc agtggaattc catcgcccac tggctcctca 4501 ctctgtgtgc actctctgaa gtcacggacc tgtcccctga tatcattcag gccaactccc 4561 ttttctcctt ctatggtgat gatgagattg taagcacaga cataaagttg gacccagaga 4621 ggctaacagc aaaactcaag gagtacgggc tgaaaccaac ccgccccgac aaaactgaag 4681 gacccctcgt catctctgaa gacctggatg gtctgacatt cctccggaga actgtgaccc 4741 gtgatccagc tggctggttt ggaaaattgg aacaaagttc aattcttagg caaatgtact 4801 ggaccagggg tcccaaccat gaagacccat ttgaaacaat gataccacac tcccaaagac 4861 ccatacaatt gatgtccttg ttgggcgagg ctgcactcca cggcccggca ttctacagca 4921 aaatcagcaa attagtcatt gcagagttga aggaaggtgg catggatttt tacgtaccca 4981 gacaagagcc aatgttcagg tggatgagat tctcagatct gagcacgtgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgtcaa cccatctgat 5101 gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttttggctct ggagcccgtt 5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt 5221 agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca 5281 ggtgaaatac tatggagcgc gcccttgggc cctgatctaa atccctactt gtctcatttg 5341 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct cgcggggaac 5401 gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaatttccc aactgaaggc 5461 ttgagcccca gccaggttac tatgttcccc catatagtag tagatgttag gcaactagaa 5521 cctgtgttga ttcccttacc cgatgttagg aataatttct atcattataa tcaatcaaat 5581 gatcccacca ttaagttgat agcaatgttg tacacaccac ttagggctaa taatgctggg 5641 gatgatgtct tcacagtctc ttgccgagtt ctcacgagac catcccccga ttttgacttc 5701 atatttctag tgccacccac agttgagtca agaactaaac cattctctgt cccagtctta 5761 actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt gttcacgggt 5821 cccagcagtg cctttgttgt ccaaccacaa aacggtaggt gcacgactga tggcgtgctc 5881 ctaggcacca cccaactgtc tcctgtcaac atctgcacct ttagaggaga tgtcacccat 5941 atcacaggta gtcataacta tacaatgaat ttggcttctc aaaattggag taactacgac 6001 ccaacagaag aaatcccagc ccctctaggg actccagact ttgtggggaa gattcaaggc 6061 atgctcaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc cacagtgtat 6121 actgggagcg ccgactttgc tccaaaactg ggtagagttc agtttgaaac tgacacaaac 6181 aatgattttg aagctaacca aaacacaaag ttcaccccag ttggtgtcat ccaagatggt 6241 ggcaccaccc atcgaaatga accccaacag tgggtactcc caagttactc aggcaggaac 6301 actcctaatg tgcatctggc ccccgctgtg gcccccactt ttccgggtga gcaactcctt 6361 ttctttagat ccaccatgcc cggatgcagc gggtacccca acatggattt ggattgtctg 6421 ctcccccagg aatgggtgca gtacttctac caggaggcag ccccagcaca atctgatgtg 6481 gctctgctaa gatttgtgaa tccagacaca ggtagggttt tgtttgaatg taagcttcat 6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat 6601 ggttatttta ggtttgattc ctggatcaac cagttttaca cgcttgcccc catgggaaat 6661 ggagcggggc gtagacgtgc actataatgg ctggagcttt ctttgctgga ttggcatctg 6721 atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc atcaaccaaa 6781 aagttgagtt tgaaaataac agaaaattgc aacaagcatc cttccaattt agcagcaatc 6841 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggctacca 6901 aaaggttaca acaggaaatg atgaaagtta agcaggcaat gctcctagag ggtgggttct 6961 ctgagacaga tgcagcccgc ggggcaatca acgcccctat gacaaaagcc ttggactgga 7021 gcgggacaag gtactgggct cctgatgcta ggactacaac atacaatgca ggccgctttt 7081 ccacccccca accatcaggg gcgctgccag gaagagctaa ttttagggat gctgtccctg 7141 ctcggggttc ctctagtaag tcttctaatt cttctactgc tacttctgtg tattcaaatc 7201 aaactacttc aacgagactt ggttctacag ctggttctgg taccagtgtc tcaagcttcc 7261 cttcagctgc aaggactagg agctgggttg aggaccaaag taggaatttg tcacctttca 7321 tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcaggtcc tctagccaag 7381 gcacagtctc aaccgtgcct aaagagattt tggactcctg gactggcgct ttcaacacgc 7441 gcaggcagcc actcttcgct cacattcgta agcgagggga gtcacgggtg taacgtgaaa 7501 agaca //