Typing tool
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Typing tool
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Complete norovirus genomes
| LC646335 | GI.7 | |
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| GI.P7 |
ORF1: 1..5380
ORF2: 5364..6983
ORF3: 6983..7630
LOCUS LC646335 7630 bp RNA linear VRL 05-AUG-2021
DEFINITION Norovirus GI.7 Hu/GI.7[P7]/1250/Tokyo/2021/Japan genomic RNA,
nearly complete genome.
ACCESSION LC646335
VERSION LC646335.1
KEYWORDS .
SOURCE Norovirus GI.7
ORGANISM Norovirus GI.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Chiba,T., Suzuki,J. and Sadamasu,K.
TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo(April
2020-March 2021)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7630)
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Chiba,T., Suzuki,J. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2021) Contact:Yuu Yaoita Tokyo Metropolitan
institute of public health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7630
/organism="Norovirus GI.7"
/mol_type="genomic RNA"
/strain="Hu/GI.7[P7]/1250/Tokyo/2021/Japan"
/host="Homo sapiens"
/db_xref="taxon:647521"
/geo_loc_name="Japan:Tokyo"
/collection_date="2021-02"
gene <1..5380
/gene="POL"
CDS <1..5380
/gene="POL"
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BDA36041.1"
/translation="DAITAADVSKQNANTNNENIGSRLMARLKERISSQRGEGTTKIK
NTEMALDLIRRSQTPSPTRSDPPPKSQRDRPPRTVSEVKQVLGWDGPTGKDYGARAWC
DLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCETPERADGCHPVKWSESAGVDLG
VDSLTTVTGPVWNMCPLPPIDSRNNGPASEPHIGDMIEFYEGHIFHYAIYLGQGKTIG
VHSPQAAFSIARITIHPMAAWWRVCYEPTDQQRLSYDQLRELENEPWPYASITNNCYE
FCCRVMSLDDTWLQRKLVTSGRFNHPTQEWSKETPDFHQDSKLEIVRDAILSAINGLV
SQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLLAELFDIFWTPPDISNFIASLL
PDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEV
FSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNILDNEEE
KARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTNRARPVVIMMCGPPGIGK
TKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKL
QAIADTAPLTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYC
TAPEIEQTRRAHPGDTNALKNLFKTDFSHLKMEIAPQGGFDNQGNTPFGRGAMKSTTL
NRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLSMAALGKRLRS
VNNMEGLRNALKGYKITECDIVWNNRTYTIKGDGSNVSVIEKQVAATLQQQAISSVTL
ALSRLRAARALAYASCLQSAVTTILQMAGSAVVISRAVKRMFGTHTNQPALEGKPREH
SCRVHRAEREGHGPIGHDGIIERYGLCETDQEEEEKIEMEVPTADKEGKNKGKNKKGR
GRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGTEIRKRKPIDWTPPKNDWSED
TRQVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVVPPSAKEIFGEKLS
DIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGA
VASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAAT
KSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLP
PGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEAAVETVTNVLE
QTMDTPVPWSYSDACMSLDKTTSSGFPHHKRKNDDWNGSAFVRELGEQAAHANNMYEL
GKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVI
KLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMCKLTANP
SLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGL
APDVLQAQSYFSFYGDDEIVSTDVEFDPIKLTQVLKEYGLKPTRPDKSEGPIIVKQQI
DGLVFLRRTISKDAVGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKIQLISL
LGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSMWTGDRNLLP
DYVNDDGV"
gene 5364..6983
/gene="VP1"
CDS 5364..6983
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BDA36042.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAVA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLHLGPHLNPFLQHLSQMYNG
WVGNMRVRVMLAGNAFTAGKIIICCVPPGFASQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLYHTNENPPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL
FLVPPSVEQKTRQLTVPNIPLNNMANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ
LLGTTPVSASQVARIRGKVFSTASGKGLNLTELDGTPYHAFESPAPLGFPDIGACDWH
VSTFKVDQNLIGDPMSRLDIKQNAPFAPHLGSIEFTSDQDPTGDQLGTLAWVSPPTSG
TRVDPWKIPSYGSTVTESTHLAPPIFPPGFGEAIVYFMSDFPIVSGTITQVPCTLPQE
FVSHFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFVTCVPNTGGGPQNLPTNG
VFVFSSWVSRYYQLKPVGTAGPARRLGVRRV"
gene 6983..7630
/gene="VP2"
CDS 6983..7630
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDA36043.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIVGAPVTKIVDWNG
VRIAAPTSTATTLRSGNFMNIPVTLKKEPQNLPPRSTGFSNPNYDSSTMISRTTQWVE
SQNSIRNLSPFHNSALRTTWVTPPGSTSTSTFSTVSSAPRFFNTERLPLFANNRK"
ORIGIN
1 cgacgctatt accgctgctg atgtcagcaa acaaaatgct aacaccaaca acgagaacat
61 cggttctcgc cttatggcga gactgaaaga gcgtataagc tctcaacgtg gtgagggaac
121 cacgaaaatt aagaatactg aaatggcact ggacctaata cgcaggtccc aaacaccatc
181 gccaacgcgc tcggaccccc ctcctaagtc gcagcgcgat cgccctccga ggactgtatc
241 agaagtcaag caggttttag gttgggatgg ccctactggt aaggattatg gggcccgagc
301 atggtgcgac ttaacagctg aagaaaagaa ggaaatcctg gacaacaacg agcgcctttt
361 tgacgctggt ggtgtgactc cttcgacagt gccaagcact tttgagagat gtgaaacacc
421 tgagcgagct gacggctgcc atcctgtcaa atggagcgag tctgcgggag tggatttagg
481 cgtggattcc ctgaccactg tcacaggccc agtgtggaac atgtgtcccc ttccaccgat
541 tgattcacgt aacaatggcc ctgcaagtga gccacacatt ggagatatga tagaatttta
601 tgaagggcac atatttcatt atgccatata tcttggtcag gggaagacca taggagtcca
661 ctcccctcag gcagccttct ccatagctcg tataaccata caccctatgg cagcatggtg
721 gcgtgtctgc tatgagccaa cagaccagca acgcctcagc tatgaccaat taagggaact
781 tgagaatgaa ccgtggccct atgcatccat aacgaacaac tgttatgaat tctgctgccg
841 tgtcatgtcc ctggacgaca cctggttaca acgaaagttg gtaacatccg gtaggttcaa
901 ccaccccacc caggagtggt ccaaggaaac acctgatttc catcaagatt caaaattgga
961 aatagtgaga gacgcaatac tatccgccat aaacggcttg gtctctcaac ctttcaagaa
1021 tatcctctca aaaattaagc cattgaattt gttgtctttg ctgtcaaatt gtgactggac
1081 tttcatgggg gttgtcgagc tagtggtgct attggctgag ttgttcgaca tcttctggac
1141 cccacctgat atctccaact tcatagcatc tctcctacct gactttcacc tgcaagggcc
1201 agaggatttg gcaagagacc tggtcccatt gatattgggg ggtatcggcc tggctattgg
1261 ctttactaga gacaaaatta caaaagtcat gaagagtgcc gttgatggcc tgcgctcagc
1321 cacgcagctt ggacaatatg gccttgaagt gttctcgatc ataaagaaat atttctttgg
1381 tggagaccaa actgagaaaa ccctcaaggg catagagaat gcagttatag acatggaggt
1441 cctgtcgagt accaatgtca cacaactggt gcgcgacaag aaattggcca aaacatacat
1501 gaacatcctg gacaatgagg aggaaaaggc aaggaaactt tcagtgcgca gtgcagaccc
1561 acatgttgta acaacagtca acaacctcat ttcgcgcata tctatggcgc gatcagcact
1621 cgccaaggct caagctgaga tgactaaccg ggcacgcccc gtggtcataa tgatgtgtgg
1681 gccaccaggt ataggaaaga ccaaagctgc tgaacatctg gccaatcgtc tagctggtga
1741 gataagacct gggggaaaag tgggcttagt gcctagagaa tccattgacc attgggatgg
1801 ctaccatggg gaagaagtcc tgttgtggga tgactatggt atgtccaaga taacagagga
1861 ctgcaataaa ttacaagcta tagctgacac tgccccactc acactcaact gtgacaggat
1921 agagaacaag ggcatgcaat ttgtgtcaga tgcaataata ataacaacta atgcccctgg
1981 gccagctccc gtcgactttg ttaaccttgg tccagtttgt cgacgtgtag actttttggt
2041 gtattgcacc gcccccgaaa ttgaacagac caggagggcc caccctgggg acaccaatgc
2101 tctcaagaat ttgtttaaaa cagacttttc ccatttaaaa atggagatag caccgcaagg
2161 ggggtttgat aatcaaggaa acaccccttt cgggaggggt gctatgaaat caaccacact
2221 caataggcta ctcatacagg cagtcgcctt gacgatggaa agacaagatg agttccaaat
2281 gcagggggca gtgtacaatt ttgatgagga tcgggtcaca gctttcacta gcctggcccg
2341 agccaacgga ctggggcttt tgagcatggc tgcactcggt aaaaggttgc ggagcgtcaa
2401 caacatggag ggacttcgca acgccctcaa agggtacaag atcactgagt gtgacattgt
2461 gtggaacaac aggacttaca ccattaaagg agatggatca aatgtgagtg tcatagaaaa
2521 gcaggtagct gccactcttc agcaacaagc catcagttca gttactctgg cactttctag
2581 attgcgcgcc gcacgagcgc tggcgtatgc atcatgcctc cagagcgcag tgaccaccat
2641 cttgcaaatg gctgggtctg cagtggtgat cagcagggca gtcaaacgca tgtttgggac
2701 ccataccaac cagccagcac tggaaggcaa gcccagagaa cacagctgca gggtccaccg
2761 ggctgaaagg gaaggtcatg gccccattgg tcatgatggc atcatagaac ggtacggtct
2821 gtgtgagact gaccaagaag aagaagaaaa gatcgagatg gaagtaccga ctgcagacaa
2881 ggaaggtaag aacaaaggca agaacaagaa ggggcgaggt aggaagaaca actataacgc
2941 cttctctagg cgaggcctaa gtgatgagga gtatgaagaa tacaagaagg ttagagaaga
3001 gaagggtggt aactacagca tccaagaata cctcgaggac cgtcaacgat atgaagaaga
3061 attggctgag gtccaagcgg gtggagatgg cgggatcggt gaaacagagg cagagatccg
3121 ccatcgtgtt ttctacaaat ccaagagtgg catgcgaaag caacgtcaag aagaacgccg
3181 acagcttgga ttggttacag gcactgaaat cagaaaacgc aagcccatag attggacacc
3241 acccaagaat gactggtcag aagacaccag acaggttaac tatgatgagc acatcagctt
3301 tgaagcccca ccttctattt ggagtagggt ggtcaaattt ggcagtggat ggggtttttg
3361 ggtgagttca acagttttta tcacaaccac acacgttgta ccaccaagtg ctaaagaaat
3421 ttttggggaa aaactttcag atatagcaat acacagagtt ggggagttca cacaatttag
3481 attctctaag aaaatgagac ctgacctcag tggtatggtc cttgaggaag gttgcccgga
3541 gggaacggtg tgcactataa tggtgaagag agattcaggt gaattgttac ctctagctgt
3601 gcgcatggga gctgtcgcat ccatgaagat acaaggtaag ctcatgcatg ggcagtctgg
3661 tatgttgcta accggtgcaa atgcaaaggg aatggacctg ggcaccatcc ctggtgactg
3721 tggagctcca tacgtgcata agaggggaaa tgactgggtg gtgtgtggag tgcacgctgc
3781 cgcaaccaag tcaggcaaca ccgtagtgtg tgcaatacaa tcaggtgaag gtgaagctac
3841 ccttgaaggg ggtggtcaaa acaaagggca ttatgcaggc catccaattt taaggtatgg
3901 caatgggccc tccctctcca caaaaaccaa attctggaaa tcaacccccc aaccacttcc
3961 gcctggaact tatgaaccag cttacctagg tgggcgtgac cctagggtag atggaggtcc
4021 atcccttcaa caagtcctac gtgaccaact caagccattt gctgagcccc gtggtaggct
4081 gccagaaccg agcttgctcg aagcagctgt ggagactgtc acaaatgttt tagaacaaac
4141 aatggacaca cctgtgccat ggagctacag tgacgcctgt atgtcacttg ataagaccac
4201 cagctcgggc tttccacacc acaaacgcaa gaatgacgat tggaacggaa gtgcgtttgt
4261 gcgtgagctt ggagaacagg cggcccatgc caacaacatg tatgagttgg gtaaatcagt
4321 caagccggtt tataccgcag cactcaagga tgaactggtg aaacccgaga aagtgtacac
4381 aaaaataaag aagagactgc tttggggcgc agaccttggc acagtcattc gagccgcccg
4441 agcctttggc ccattctgtg aagccataaa accacatgtg ataaaactgc caattaaagt
4501 tggcatgaat gcaattgagg acggccccct catatatgct gaacatgcaa agtataaata
4561 ccactttgat gcagactaca cagcttggga ttcaacccaa aatagagaaa tcatgttaga
4621 atccttcaac atcatgtgca aactcacggc taatccgtca ctggctgccg tcgtggctca
4681 ggacctgtta tccccatcag aaatggacgt gggtgactac gtgatcagtg tcaaggatgg
4741 ccttccctca gggttcccat gcacctcaca ggtcaatagc ataaaccact ggatatacac
4801 tctgtgtgct ctgtcggaag tcacaggcct agcccctgac gttctgcagg cccaatccta
4861 cttctccttc tacggggacg atgaaattgt ctcaactgat gtggaatttg acccaataaa
4921 gctcacccaa gtgcttaagg aatatggctt gaagcccacc cggcctgaca aatcggaggg
4981 acccatcata gtgaaacaac agatagatgg gctagttttc ctgaggcgta ctatatcaaa
5041 agatgctgtc ggttaccaag gacgtctgga ccgtaactcc attgaaagac aattatggtg
5101 gactcggggc ccgaaccatg atgatccctt tgagacattg ataccccatc aacaaagaaa
5161 gatccaacta atttccctgc ttggtgaagc cgcacttcat ggagaaaaat tctataggaa
5221 gatcgccaac agagttatac aggaagtcaa ggaggggggg cttgagctct atataccggg
5281 ttggcaggcc atgttccgct ggatgcgatt ccatgacttg agtatgtgga caggagatcg
5341 caatctcttg cccgattatg taaatgatga tggcgtctaa ggacgccccc tcaaacatgg
5401 atggcactag tggtgccggt cagctggtcc cagaggttaa tgcagctgaa cctttacccc
5461 ttgaaccggt agtgggcgcc gcaactgcgg ttgccactgc tggacaagtt aatttaatag
5521 acccctggat tatgaataat tttgttcaag cccctgaggg tgagtttacc atctcaccta
5581 ataatacccc tggagatatt ctgtttgatt tgcatctagg accacacctt aatccctttt
5641 tgcagcattt gtcccaaatg tacaatggtt gggtgggcaa tatgagagtt agagttatgc
5701 ttgcagggaa tgcgttcact gccggtaaga tcataatttg ttgtgtccca cctggctttg
5761 catcccaaaa tatatcaatt ggccaggcca ctatgttccc acatgtcata gctgatgtga
5821 gagtgctgga gcctatagaa atccctcttg atgatgtgcg caatgtcttg taccacacca
5881 atgagaaccc ccctaccatg cggttgcttt gcatgctata cacacccctc cgtgctggtg
5941 gtgcttcatc gggcacggac ccctttgtca ttgcgggtcg tgtattaact tgcccagccc
6001 ctgattttaa ttttctgttc cttgtgcccc ctagtgtaga gcagaaaacc aggcagttga
6061 ctgtgcccaa catacccctg aacaatatgg ccaattccag agtgcccgca atgataaaca
6121 agatgacagt ttctgctgat caaaaccagg tggtccaatt ccagaatggc cgttgcacac
6181 ttgaaggaca gcttttgggc acaactccag tttcagctag ccaagtggcc cgcatacgtg
6241 gcaaagtctt ttccaccgca tctgggaaag gactcaatct gactgagtta gatggaactc
6301 cttaccacgc atttgagagt ccagcccccc ttggtttccc tgacatcgga gcctgtgatt
6361 ggcatgtgtc aacctttaaa gtggatcaga accttatagg agaccctatg tccaggttag
6421 atataaaaca aaatgccccg tttgcaccac accttggctc cattgaattc acatctgacc
6481 aggacccaac tggggatcaa ttgggaacat tggcctgggt ctcccctccc actagtggaa
6541 ctagggtaga cccctggaaa attccatcat acggttcaac agtgacagaa tccactcatc
6601 tggcaccacc catatttcca ccaggctttg gcgaggccat agtttacttt atgtcagatt
6661 ttcccattgt ctcaggcacc atcacccaag tcccctgcac cctgccccag gaatttgtct
6721 cacactttgt ggagcaacag gcaccgattc gaggagaagc tgccctgctt cattatgtgg
6781 acccagacac tcaccgtaat ctaggagagt tcaaattgta ccctgatggg tttgtcacct
6841 gtgtgccaaa cacaggtggt ggtcctcaaa atttacctac aaatggagtc tttgtctttt
6901 cttcctgggt ttctaggtat taccaattaa agcctgtggg aacagccggt ccggctagga
6961 ggcttggtgt cagaagggta taatggccca agccattata ggagctattg ccgccaccgc
7021 tgctggcagc gccgtggggg caggtatcca ggctgggaca gaagcagccc ttcaatacca
7081 gaggtttcaa caagatctta cactacagga gaattcattt aaacatgatg aaagaatgct
7141 aggtttgcag attgagggat ctaatgctct actacaaaag aacctttcta ctcgctataa
7201 tcttttggtt ggtgcaggtc tttcttcagc tgacgctgca agatccatcg ttggggcccc
7261 tgtgacaaaa attgtggact ggaacggggt gaggattgct gcccctacgt ccactgccac
7321 tacactccga tctggcaatt ttatgaatat accagtcaca ctcaaaaagg agcctcaaaa
7381 cttgccgcca cgctctacgg gcttttctaa tcctaattat gattcatcca caatgatttc
7441 taggacaact cagtgggtag agtcacaaaa ttcaatcagg aatttatcgc ctttccacaa
7501 ctcagccctg aggaccacct gggtgacccc tcctggttct acttctactt ctactttttc
7561 tactgtttct tctgcgccac ggttctttaa caccgagcgc ctccctctgt tcgcaaacaa
7621 taggaaatag
//