Typing tool
|
Complete norovirus genomes
LC646335 | GI.7 | ||
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GI.P7 |
ORF1: 1..5380 ORF2: 5364..6983 ORF3: 6983..7630LOCUS LC646335 7630 bp RNA linear VRL 05-AUG-2021 DEFINITION Norovirus GI.7 Hu/GI.7[P7]/1250/Tokyo/2021/Japan genomic RNA, nearly complete genome. ACCESSION LC646335 VERSION LC646335.1 KEYWORDS . SOURCE Norovirus GI.7 ORGANISM Norovirus GI.7 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Chiba,T., Suzuki,J. and Sadamasu,K. TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo(April 2020-March 2021) JOURNAL Unpublished REFERENCE 2 (bases 1 to 7630) AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y., Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T., Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M., Chiba,T., Suzuki,J. and Sadamasu,K. TITLE Direct Submission JOURNAL Submitted (02-AUG-2021) Contact:Yuu Yaoita Tokyo Metropolitan institute of public health, Department of Microbiology; Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..7630 /organism="Norovirus GI.7" /mol_type="genomic RNA" /strain="Hu/GI.7[P7]/1250/Tokyo/2021/Japan" /host="Homo sapiens" /db_xref="taxon:647521" /country="Japan:Tokyo" /collection_date="2021-02" gene <1..5380 /gene="POL" CDS <1..5380 /gene="POL" /note="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BDA36041.1" /translation="DAITAADVSKQNANTNNENIGSRLMARLKERISSQRGEGTTKIK NTEMALDLIRRSQTPSPTRSDPPPKSQRDRPPRTVSEVKQVLGWDGPTGKDYGARAWC DLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCETPERADGCHPVKWSESAGVDLG VDSLTTVTGPVWNMCPLPPIDSRNNGPASEPHIGDMIEFYEGHIFHYAIYLGQGKTIG VHSPQAAFSIARITIHPMAAWWRVCYEPTDQQRLSYDQLRELENEPWPYASITNNCYE FCCRVMSLDDTWLQRKLVTSGRFNHPTQEWSKETPDFHQDSKLEIVRDAILSAINGLV SQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLLAELFDIFWTPPDISNFIASLL PDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEV FSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNILDNEEE KARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTNRARPVVIMMCGPPGIGK TKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKL QAIADTAPLTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYC TAPEIEQTRRAHPGDTNALKNLFKTDFSHLKMEIAPQGGFDNQGNTPFGRGAMKSTTL NRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLSMAALGKRLRS VNNMEGLRNALKGYKITECDIVWNNRTYTIKGDGSNVSVIEKQVAATLQQQAISSVTL ALSRLRAARALAYASCLQSAVTTILQMAGSAVVISRAVKRMFGTHTNQPALEGKPREH SCRVHRAEREGHGPIGHDGIIERYGLCETDQEEEEKIEMEVPTADKEGKNKGKNKKGR GRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG GIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGTEIRKRKPIDWTPPKNDWSED TRQVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVVPPSAKEIFGEKLS DIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGA VASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAAT KSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLP PGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEAAVETVTNVLE QTMDTPVPWSYSDACMSLDKTTSSGFPHHKRKNDDWNGSAFVRELGEQAAHANNMYEL GKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVI KLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMCKLTANP SLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGL APDVLQAQSYFSFYGDDEIVSTDVEFDPIKLTQVLKEYGLKPTRPDKSEGPIIVKQQI DGLVFLRRTISKDAVGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKIQLISL LGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSMWTGDRNLLP DYVNDDGV" gene 5364..6983 /gene="VP1" CDS 5364..6983 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="BDA36042.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAVA TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLHLGPHLNPFLQHLSQMYNG WVGNMRVRVMLAGNAFTAGKIIICCVPPGFASQNISIGQATMFPHVIADVRVLEPIEI PLDDVRNVLYHTNENPPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL FLVPPSVEQKTRQLTVPNIPLNNMANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ LLGTTPVSASQVARIRGKVFSTASGKGLNLTELDGTPYHAFESPAPLGFPDIGACDWH VSTFKVDQNLIGDPMSRLDIKQNAPFAPHLGSIEFTSDQDPTGDQLGTLAWVSPPTSG TRVDPWKIPSYGSTVTESTHLAPPIFPPGFGEAIVYFMSDFPIVSGTITQVPCTLPQE FVSHFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFVTCVPNTGGGPQNLPTNG VFVFSSWVSRYYQLKPVGTAGPARRLGVRRV" gene 6983..7630 /gene="VP2" CDS 6983..7630 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="BDA36043.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIVGAPVTKIVDWNG VRIAAPTSTATTLRSGNFMNIPVTLKKEPQNLPPRSTGFSNPNYDSSTMISRTTQWVE SQNSIRNLSPFHNSALRTTWVTPPGSTSTSTFSTVSSAPRFFNTERLPLFANNRK" ORIGIN 1 cgacgctatt accgctgctg atgtcagcaa acaaaatgct aacaccaaca acgagaacat 61 cggttctcgc cttatggcga gactgaaaga gcgtataagc tctcaacgtg gtgagggaac 121 cacgaaaatt aagaatactg aaatggcact ggacctaata cgcaggtccc aaacaccatc 181 gccaacgcgc tcggaccccc ctcctaagtc gcagcgcgat cgccctccga ggactgtatc 241 agaagtcaag caggttttag gttgggatgg ccctactggt aaggattatg gggcccgagc 301 atggtgcgac ttaacagctg aagaaaagaa ggaaatcctg gacaacaacg agcgcctttt 361 tgacgctggt ggtgtgactc cttcgacagt gccaagcact tttgagagat gtgaaacacc 421 tgagcgagct gacggctgcc atcctgtcaa atggagcgag tctgcgggag tggatttagg 481 cgtggattcc ctgaccactg tcacaggccc agtgtggaac atgtgtcccc ttccaccgat 541 tgattcacgt aacaatggcc ctgcaagtga gccacacatt ggagatatga tagaatttta 601 tgaagggcac atatttcatt atgccatata tcttggtcag gggaagacca taggagtcca 661 ctcccctcag gcagccttct ccatagctcg tataaccata caccctatgg cagcatggtg 721 gcgtgtctgc tatgagccaa cagaccagca acgcctcagc tatgaccaat taagggaact 781 tgagaatgaa ccgtggccct atgcatccat aacgaacaac tgttatgaat tctgctgccg 841 tgtcatgtcc ctggacgaca cctggttaca acgaaagttg gtaacatccg gtaggttcaa 901 ccaccccacc caggagtggt ccaaggaaac acctgatttc catcaagatt caaaattgga 961 aatagtgaga gacgcaatac tatccgccat aaacggcttg gtctctcaac ctttcaagaa 1021 tatcctctca aaaattaagc cattgaattt gttgtctttg ctgtcaaatt gtgactggac 1081 tttcatgggg gttgtcgagc tagtggtgct attggctgag ttgttcgaca tcttctggac 1141 cccacctgat atctccaact tcatagcatc tctcctacct gactttcacc tgcaagggcc 1201 agaggatttg gcaagagacc tggtcccatt gatattgggg ggtatcggcc tggctattgg 1261 ctttactaga gacaaaatta caaaagtcat gaagagtgcc gttgatggcc tgcgctcagc 1321 cacgcagctt ggacaatatg gccttgaagt gttctcgatc ataaagaaat atttctttgg 1381 tggagaccaa actgagaaaa ccctcaaggg catagagaat gcagttatag acatggaggt 1441 cctgtcgagt accaatgtca cacaactggt gcgcgacaag aaattggcca aaacatacat 1501 gaacatcctg gacaatgagg aggaaaaggc aaggaaactt tcagtgcgca gtgcagaccc 1561 acatgttgta acaacagtca acaacctcat ttcgcgcata tctatggcgc gatcagcact 1621 cgccaaggct caagctgaga tgactaaccg ggcacgcccc gtggtcataa tgatgtgtgg 1681 gccaccaggt ataggaaaga ccaaagctgc tgaacatctg gccaatcgtc tagctggtga 1741 gataagacct gggggaaaag tgggcttagt gcctagagaa tccattgacc attgggatgg 1801 ctaccatggg gaagaagtcc tgttgtggga tgactatggt atgtccaaga taacagagga 1861 ctgcaataaa ttacaagcta tagctgacac tgccccactc acactcaact gtgacaggat 1921 agagaacaag ggcatgcaat ttgtgtcaga tgcaataata ataacaacta atgcccctgg 1981 gccagctccc gtcgactttg ttaaccttgg tccagtttgt cgacgtgtag actttttggt 2041 gtattgcacc gcccccgaaa ttgaacagac caggagggcc caccctgggg acaccaatgc 2101 tctcaagaat ttgtttaaaa cagacttttc ccatttaaaa atggagatag caccgcaagg 2161 ggggtttgat aatcaaggaa acaccccttt cgggaggggt gctatgaaat caaccacact 2221 caataggcta ctcatacagg cagtcgcctt gacgatggaa agacaagatg agttccaaat 2281 gcagggggca gtgtacaatt ttgatgagga tcgggtcaca gctttcacta gcctggcccg 2341 agccaacgga ctggggcttt tgagcatggc tgcactcggt aaaaggttgc ggagcgtcaa 2401 caacatggag ggacttcgca acgccctcaa agggtacaag atcactgagt gtgacattgt 2461 gtggaacaac aggacttaca ccattaaagg agatggatca aatgtgagtg tcatagaaaa 2521 gcaggtagct gccactcttc agcaacaagc catcagttca gttactctgg cactttctag 2581 attgcgcgcc gcacgagcgc tggcgtatgc atcatgcctc cagagcgcag tgaccaccat 2641 cttgcaaatg gctgggtctg cagtggtgat cagcagggca gtcaaacgca tgtttgggac 2701 ccataccaac cagccagcac tggaaggcaa gcccagagaa cacagctgca gggtccaccg 2761 ggctgaaagg gaaggtcatg gccccattgg tcatgatggc atcatagaac ggtacggtct 2821 gtgtgagact gaccaagaag aagaagaaaa gatcgagatg gaagtaccga ctgcagacaa 2881 ggaaggtaag aacaaaggca agaacaagaa ggggcgaggt aggaagaaca actataacgc 2941 cttctctagg cgaggcctaa gtgatgagga gtatgaagaa tacaagaagg ttagagaaga 3001 gaagggtggt aactacagca tccaagaata cctcgaggac cgtcaacgat atgaagaaga 3061 attggctgag gtccaagcgg gtggagatgg cgggatcggt gaaacagagg cagagatccg 3121 ccatcgtgtt ttctacaaat ccaagagtgg catgcgaaag caacgtcaag aagaacgccg 3181 acagcttgga ttggttacag gcactgaaat cagaaaacgc aagcccatag attggacacc 3241 acccaagaat gactggtcag aagacaccag acaggttaac tatgatgagc acatcagctt 3301 tgaagcccca ccttctattt ggagtagggt ggtcaaattt ggcagtggat ggggtttttg 3361 ggtgagttca acagttttta tcacaaccac acacgttgta ccaccaagtg ctaaagaaat 3421 ttttggggaa aaactttcag atatagcaat acacagagtt ggggagttca cacaatttag 3481 attctctaag aaaatgagac ctgacctcag tggtatggtc cttgaggaag gttgcccgga 3541 gggaacggtg tgcactataa tggtgaagag agattcaggt gaattgttac ctctagctgt 3601 gcgcatggga gctgtcgcat ccatgaagat acaaggtaag ctcatgcatg ggcagtctgg 3661 tatgttgcta accggtgcaa atgcaaaggg aatggacctg ggcaccatcc ctggtgactg 3721 tggagctcca tacgtgcata agaggggaaa tgactgggtg gtgtgtggag tgcacgctgc 3781 cgcaaccaag tcaggcaaca ccgtagtgtg tgcaatacaa tcaggtgaag gtgaagctac 3841 ccttgaaggg ggtggtcaaa acaaagggca ttatgcaggc catccaattt taaggtatgg 3901 caatgggccc tccctctcca caaaaaccaa attctggaaa tcaacccccc aaccacttcc 3961 gcctggaact tatgaaccag cttacctagg tgggcgtgac cctagggtag atggaggtcc 4021 atcccttcaa caagtcctac gtgaccaact caagccattt gctgagcccc gtggtaggct 4081 gccagaaccg agcttgctcg aagcagctgt ggagactgtc acaaatgttt tagaacaaac 4141 aatggacaca cctgtgccat ggagctacag tgacgcctgt atgtcacttg ataagaccac 4201 cagctcgggc tttccacacc acaaacgcaa gaatgacgat tggaacggaa gtgcgtttgt 4261 gcgtgagctt ggagaacagg cggcccatgc caacaacatg tatgagttgg gtaaatcagt 4321 caagccggtt tataccgcag cactcaagga tgaactggtg aaacccgaga aagtgtacac 4381 aaaaataaag aagagactgc tttggggcgc agaccttggc acagtcattc gagccgcccg 4441 agcctttggc ccattctgtg aagccataaa accacatgtg ataaaactgc caattaaagt 4501 tggcatgaat gcaattgagg acggccccct catatatgct gaacatgcaa agtataaata 4561 ccactttgat gcagactaca cagcttggga ttcaacccaa aatagagaaa tcatgttaga 4621 atccttcaac atcatgtgca aactcacggc taatccgtca ctggctgccg tcgtggctca 4681 ggacctgtta tccccatcag aaatggacgt gggtgactac gtgatcagtg tcaaggatgg 4741 ccttccctca gggttcccat gcacctcaca ggtcaatagc ataaaccact ggatatacac 4801 tctgtgtgct ctgtcggaag tcacaggcct agcccctgac gttctgcagg cccaatccta 4861 cttctccttc tacggggacg atgaaattgt ctcaactgat gtggaatttg acccaataaa 4921 gctcacccaa gtgcttaagg aatatggctt gaagcccacc cggcctgaca aatcggaggg 4981 acccatcata gtgaaacaac agatagatgg gctagttttc ctgaggcgta ctatatcaaa 5041 agatgctgtc ggttaccaag gacgtctgga ccgtaactcc attgaaagac aattatggtg 5101 gactcggggc ccgaaccatg atgatccctt tgagacattg ataccccatc aacaaagaaa 5161 gatccaacta atttccctgc ttggtgaagc cgcacttcat ggagaaaaat tctataggaa 5221 gatcgccaac agagttatac aggaagtcaa ggaggggggg cttgagctct atataccggg 5281 ttggcaggcc atgttccgct ggatgcgatt ccatgacttg agtatgtgga caggagatcg 5341 caatctcttg cccgattatg taaatgatga tggcgtctaa ggacgccccc tcaaacatgg 5401 atggcactag tggtgccggt cagctggtcc cagaggttaa tgcagctgaa cctttacccc 5461 ttgaaccggt agtgggcgcc gcaactgcgg ttgccactgc tggacaagtt aatttaatag 5521 acccctggat tatgaataat tttgttcaag cccctgaggg tgagtttacc atctcaccta 5581 ataatacccc tggagatatt ctgtttgatt tgcatctagg accacacctt aatccctttt 5641 tgcagcattt gtcccaaatg tacaatggtt gggtgggcaa tatgagagtt agagttatgc 5701 ttgcagggaa tgcgttcact gccggtaaga tcataatttg ttgtgtccca cctggctttg 5761 catcccaaaa tatatcaatt ggccaggcca ctatgttccc acatgtcata gctgatgtga 5821 gagtgctgga gcctatagaa atccctcttg atgatgtgcg caatgtcttg taccacacca 5881 atgagaaccc ccctaccatg cggttgcttt gcatgctata cacacccctc cgtgctggtg 5941 gtgcttcatc gggcacggac ccctttgtca ttgcgggtcg tgtattaact tgcccagccc 6001 ctgattttaa ttttctgttc cttgtgcccc ctagtgtaga gcagaaaacc aggcagttga 6061 ctgtgcccaa catacccctg aacaatatgg ccaattccag agtgcccgca atgataaaca 6121 agatgacagt ttctgctgat caaaaccagg tggtccaatt ccagaatggc cgttgcacac 6181 ttgaaggaca gcttttgggc acaactccag tttcagctag ccaagtggcc cgcatacgtg 6241 gcaaagtctt ttccaccgca tctgggaaag gactcaatct gactgagtta gatggaactc 6301 cttaccacgc atttgagagt ccagcccccc ttggtttccc tgacatcgga gcctgtgatt 6361 ggcatgtgtc aacctttaaa gtggatcaga accttatagg agaccctatg tccaggttag 6421 atataaaaca aaatgccccg tttgcaccac accttggctc cattgaattc acatctgacc 6481 aggacccaac tggggatcaa ttgggaacat tggcctgggt ctcccctccc actagtggaa 6541 ctagggtaga cccctggaaa attccatcat acggttcaac agtgacagaa tccactcatc 6601 tggcaccacc catatttcca ccaggctttg gcgaggccat agtttacttt atgtcagatt 6661 ttcccattgt ctcaggcacc atcacccaag tcccctgcac cctgccccag gaatttgtct 6721 cacactttgt ggagcaacag gcaccgattc gaggagaagc tgccctgctt cattatgtgg 6781 acccagacac tcaccgtaat ctaggagagt tcaaattgta ccctgatggg tttgtcacct 6841 gtgtgccaaa cacaggtggt ggtcctcaaa atttacctac aaatggagtc tttgtctttt 6901 cttcctgggt ttctaggtat taccaattaa agcctgtggg aacagccggt ccggctagga 6961 ggcttggtgt cagaagggta taatggccca agccattata ggagctattg ccgccaccgc 7021 tgctggcagc gccgtggggg caggtatcca ggctgggaca gaagcagccc ttcaatacca 7081 gaggtttcaa caagatctta cactacagga gaattcattt aaacatgatg aaagaatgct 7141 aggtttgcag attgagggat ctaatgctct actacaaaag aacctttcta ctcgctataa 7201 tcttttggtt ggtgcaggtc tttcttcagc tgacgctgca agatccatcg ttggggcccc 7261 tgtgacaaaa attgtggact ggaacggggt gaggattgct gcccctacgt ccactgccac 7321 tacactccga tctggcaatt ttatgaatat accagtcaca ctcaaaaagg agcctcaaaa 7381 cttgccgcca cgctctacgg gcttttctaa tcctaattat gattcatcca caatgatttc 7441 taggacaact cagtgggtag agtcacaaaa ttcaatcagg aatttatcgc ctttccacaa 7501 ctcagccctg aggaccacct gggtgacccc tcctggttct acttctactt ctactttttc 7561 tactgtttct tctgcgccac ggttctttaa caccgagcgc ctccctctgt tcgcaaacaa 7621 taggaaatag //