Typing tool
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Typing tool
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Complete norovirus genomes
| LC646334 | GI.7 | |
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| GI.P9 |
ORF1: 1..5388
ORF2: 5372..6991
ORF3: 6991..7638
LOCUS LC646334 7638 bp RNA linear VRL 05-AUG-2021
DEFINITION Norovirus GI.7 Hu/GI.7[P7]/1177F/Tokyo/2020/Japan genomic RNA,
nearly complete genome.
ACCESSION LC646334
VERSION LC646334.1
KEYWORDS .
SOURCE Norovirus GI.7
ORGANISM Norovirus GI.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Chiba,T., Suzuki,J. and Sadamasu,K.
TITLE A Genetic Analysis of Norovirus Cases Detected in Tokyo(April
2020-March 2021)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7638)
AUTHORS Yaoita,Y., Hasegawa,M., Asakura,H., Nagano,M., Hayashi,Y.,
Negishi,A., Kumagai,R., Kawakami,M., Hayashi,M., Yamazaki,T.,
Kitamura,Y., Kaku,E., Fujiwara,T., Miyake,H., Nagashima,M.,
Chiba,T., Suzuki,J. and Sadamasu,K.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2021) Contact:Yuu Yaoita Tokyo Metropolitan
institute of public health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7638
/organism="Norovirus GI.7"
/mol_type="genomic RNA"
/strain="Hu/GI.7[P7]/1177F/Tokyo/2020/Japan"
/host="Homo sapiens"
/db_xref="taxon:647521"
/country="Japan:Tokyo"
/collection_date="2020-12"
gene <1..5388
/gene="POL"
CDS <1..5388
/gene="POL"
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BDA36038.1"
/translation="MASNDAITAADVSKKNANTNNENIGSRLMAKLKERISSQRGEGT
TKIKNTEMALELIRRSQTPSPTRPDPPPKSQRDRPPRTVSEVKQALGWGDSAHKDYGA
RAWCDLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCETLEQTNDNHPVRWNESTG
VNLGVGPLTTVAGPVWNMCPLPPIDSRNDGPANEPRIGDMIEFYEGHIFHYAIYLGQG
KTIGVHAPRAAFSIARITIHPITAWWRVCYEPTDHQRLSYDQLKELENEPWPYASITN
NCYEFCCRVMSLDDSWLQRKLVTSGRFNHPTQEWSRDTPDFHQDSKLEIVRDAILSAI
NGLVSQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLMAELFDIFWTPPDVSNFI
ASLLPDFHLQGPEDLAKDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLGQY
GLEIFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNILD
NEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTSRARPVVIMMCGPP
GIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKITED
CNKLQAIADTAPFTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRVDF
LVYCTAPEIEQTRRTHPGDTNAIKDLFKPDFSHLKMEIAPQGGFDNQGNTPFGRGTMK
PTTLNRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLSMAALGK
RLRSVNNMEGLRNALKGYKINECDIVWNNRTYTIKGDGSSVSITEKQVAASLQQQAVS
SVTLALSRLRAARALAYASCFQSAVVTILQMAGSAVVISRAVKRMFGTHTNQPALEGK
PKEHNCRVHRAEREGHGPIGHDGIIERYGLCESDQDEEKIVMEVPTADKEGKNKGKNK
KGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAG
GDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGAEIRKRKPIDWTPPKNDW
SEDTREVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPDVREVFGE
KLSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPLAVR
MGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHA
AATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQ
PLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRMPEPSLLEAAVETVTN
VLEQTMDTPVPWSYSDACMSLDKTTSSGFPHHKRKNDDWNGSAFVRELGEQAAHANNM
YELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEAIKP
HVIKLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMCKLT
ADPSLAAIVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEV
TGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPTKLTQVLREYGLKPTRPDKSEGPIIVK
HQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKIQL
ISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAIFRWMRFHDLSLWTGDRN
LLPDYVNDDGV"
gene 5372..6991
/gene="VP1"
CDS 5372..6991
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BDA36039.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAVA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLQLGPHLNPFLQHLSQMYNG
WVGNMRVRVMLAGNAFTAGKIIICCVPPGFSSQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLFHTNESRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPSPDFNFL
FLVPPSVEQKTRQLTVPNIPLNNLANSRVPAMINKMTISTDQSQVVQFQNGRCTLEGQ
LLGTTPVSASQVARIRGKVFSTASGKGLNLTELDGTPYHAFESPAPLGFPDIGACDWH
VSTFKVDQNLSGDPMSRLDIKQNAPFAPHLGSIEFTSDQEPTGDQLGTLAWVSPSTSG
ARVDPWKIPSYGSTVTESTHLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQVPCTLPQE
FVSHFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPING
VFVFSSWVSRYYQLKPVGTAGPARRLGVRRV"
gene 6991..7638
/gene="VP2"
CDS 6991..7638
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDA36040.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIVGAPVTKIVDWNG
VRIAAPMSTATTLRSGNFMSIPVTPRKESQNLSARSVGLTNPNYDSSTMISRTTQWVE
SQNSARNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSVPRFFNTERLPLFANNRK"
ORIGIN
1 atggcgtcta acgacgctat taccgctgct gatgtcagca aaaaaaatgc taacaccaac
61 aacgaaaata tcggttctcg cctcatggcg aaactgaagg agcgtataag ctcccaacgt
121 ggtgaaggca ccacaaagat taaaaacact gaaatggcat tggaattaat acgtaggtcc
181 caaacaccat ccccaacacg cccagatccc cctcctaaat cgcagcgtga tcgccctcca
241 agaactgtat cagaagttaa acaagcttta ggttggggtg attccgccca taaggactat
301 ggggcccgag cgtggtgtga cctaacagct gaggaaaaga aagagatctt ggacaacaat
361 gagcgcctct ttgatgctgg cggtgtgact ccatcaacag taccgagcac ttttgagagg
421 tgtgagacac ttgaacaaac caatgataac catcctgtta gatggaatga gtctacggga
481 gtgaatctag gtgttggccc tctaaccaca gttgcaggtc cagtatggaa tatgtgtcct
541 cttccaccga ttgactcgcg caatgatggc cctgcaaatg aaccacgtat tggggatatg
601 atagagtttt atgaagggca catatttcac tatgccatat accttggcca aggaaagacc
661 ataggggtcc acgccccccg agcagccttc tccatagcac gtatcaccat acaccctatc
721 acagcatggt ggcgtgtctg ctatgagccc acagaccatc aacgcctcag ctatgaccaa
781 ttgaaagagc ttgagaatga gccatggccc tatgcatcca taacaaacaa ttgctatgag
841 ttctgttgcc gcgttatgtc cctggacgac tcctggttgc agcgaaaact agtgacctct
901 ggcaggttta accaccctac tcaggaatgg tctagggaca caccggactt ccatcaagac
961 tcgaaattag aaatagtgag agatgcaatt ctatctgcta taaatggcct agtctctcaa
1021 cctttcaaaa acattctttc aaagatcaag ccactaaacc tgttatccct gttatcaaat
1081 tgtgactgga cttttatggg ggtcgtcgag ctggtggtgt tgatggctga actgtttgat
1141 atcttctgga ccccccctga tgtttccaac ttcatagcgt ctcttttgcc tgatttccac
1201 ctgcaaggac cagaggattt ggctaaagat ctggttccac tgatattggg gggtattggc
1261 ttggccattg gcttcaccag agataagata acaaaagtca tgaagagcgc cgttgatggc
1321 ttgcgatcag ccacacagct cggacaatat ggcctcgaga tattctcaat cattaaaaag
1381 tatttctttg gtggagatca aaccgagaaa acccttaagg gcatagaaaa tgctgtcata
1441 gacatggaag tcttgtcgag caccaatgtc acccagttgg tgcgcgataa aaagttggct
1501 aagacctaca tgaacatcct agataatgaa gaagagaaag caagaaaact ttcagtacgt
1561 agtgctgacc cacatgttgt aacaacggtc aacaatctca tttcgcgcat atccatggcg
1621 cgttcagctc tcgccaaagc ccaagctgaa atgactagtc gggcgcgccc agtagtcata
1681 atgatgtgtg gaccaccagg cataggaaaa accaaagctg ctgagcactt agccaaccgc
1741 ttagctggtg agataagacc agggggcaaa gtgggactag tgcctagaga atccattgac
1801 cattgggatg gctatcatgg ggaagaagtt ctattgtggg atgactatgg catgtctaag
1861 ataacagagg attgcaacaa attgcaggcc atagctgaca ctgccccgtt cacactcaac
1921 tgtgacagga tagagaacaa aggcatgcaa tttgtgtcgg atgcgataat aataacaaca
1981 aatgcccctg gaccagcccc cgttgacttt gtcaaccttg gtccagtgtg tcgacgtgtg
2041 gacttcctgg tgtactgcac cgcccccgaa attgaacaga ctaggagaac ccatcccgga
2101 gacaccaatg ctatcaaaga cctgttcaaa ccagactttt cccaccttaa aatggagata
2161 gcaccacaag gggggtttga caatcaaggt aataccccct ttgggagggg cactatgaag
2221 ccaaccacac ttaataggtt actcatacaa gctgttgcac taacaatgga aagacaagat
2281 gagttccaaa tgcaaggggc ggtatataat tttgatgagg accgggtgac agctttcacc
2341 agtttggccc gagccaatgg gctaggtctc ctgagtatgg cagcacttgg aaaaagacta
2401 cggagtgtca acaacatgga aggacttcgc aatgctctca aggggtacaa gatcaatgaa
2461 tgtgatattg tgtggaacaa tagaacttac accattaaag gggatggatc aagtgtgagt
2521 atcactgaga aacaggtggc agcctctctc cagcagcaag ccgtcagctc agtaaccctg
2581 gcgctttcta ggttgcgcgc cgcgcgagcg ctggcgtatg catcttgctt tcagagcgca
2641 gtggttacca tcctacaaat ggccgggtct gcagtggtga tcagtagggc agtcaaacgt
2701 atgttcggga cccacacaaa ccagccggcc ctggagggca agcccaagga acacaactgc
2761 agagtccacc gtgctgaaag ggaaggccat ggacctattg ggcatgacgg cattatagaa
2821 cgatacggcc tgtgtgagag cgaccaggat gaggagaaga tcgtgatgga agtgccaact
2881 gctgacaaag agggcaaaaa taaaggcaaa aacaagaagg ggcgaggtag gaagaacaac
2941 tacaacgcct tttctaggcg aggcctgagt gatgaggagt atgaagaata taaaaaggtt
3001 agagaagaaa agggtggcaa ctacagcatc caagagtacc ttgaggaccg tcagcgttac
3061 gaagaagaac tcgctgaggt ccaagctggt ggagatggcg ggatcggtga gacggaggca
3121 gagatccgcc atcgggtctt ctataaatcc aaaagtggta tgcgcaaaca gcgccaagag
3181 gagcgccgac aacttgggct ggtcacgggt gctgaaatta ggaaacgcaa acccatagac
3241 tggacaccgc caaagaatga ctggtcagaa gatactaggg aagtcaacta tgacgaacac
3301 atcagttttg aagccccacc ctctatttgg agtagggtcg taaaatttgg cagtggatgg
3361 ggcttttggg taagttcaac agttttcatt acaaccacac acgtcatacc accagatgtt
3421 agagaagttt ttggtgaaaa gctctcagac atagcaatac acagagttgg ggaattcaca
3481 caatttagat tctccaaaaa gatgagacct gacctcagtg gcatggtatt ggaagagggt
3541 tgcccagaag gaactgtatg cactataatg gtgaagagag actcaggtga actactacca
3601 ttggccgtgc gcatgggagc tgtcgcatcc atgaagatac aaggaaagct tatgcacggt
3661 caatctggca tgctgctaac tggtgcgaat gcaaagggaa tggatctagg caccattcct
3721 ggtgattgtg gagctccata tgtacacaaa agaggaaatg attgggtagt gtgtggagtg
3781 cacgcagccg caaccaagtc aggcaacact gttgtttgtg caatacagtc aggtgaaggt
3841 gaagccactc ttgagggggg tggacaaaac aaagggcatt atgcaggtca cccaatttta
3901 aggtatggta atgggccctc cctctctaca aaaaccaaat tttggaagtc aactccccaa
3961 cccctccccc ctgggaccta cgaaccagcc tacttgggcg ggcgtgaccc cagagtggaa
4021 ggcggaccat cactccaaca ggtcctacgt gatcagctca agccctttgc tgaaccccgt
4081 ggtaggatgc cagagccaag cttgctagaa gcagctgtgg agaccgtcac aaacgtctta
4141 gagcaaacca tggacacgcc tgtgccatgg agttacagcg acgcctgcat gtcgcttgac
4201 aagactacta gctcaggctt tccacaccac aaacgcaaga acgatgactg gaatggcagt
4261 gcgtttgtgc gtgagcttgg tgaacaggca gcccatgcca acaacatgta tgaattaggc
4321 aaatcagtca aaccagttta cactgcagca cttaaagatg aattggtgaa accagaaaaa
4381 gtgtatacaa agataaagaa aagactgctt tggggtgcag acctcggtac ggttattcga
4441 gctgctcgag cctttggccc attctgtgaa gctataaaac cacatgtgat aaaattgccg
4501 attaaagtcg gcatgaatgc aattgaagat ggccccctca tatatgctga acatgctaag
4561 tataaatatc actttgatgc agactacaca gcttgggatt caacacagaa cagggagatt
4621 atgttagaat ccttcaacat catgtgtaag cttacagctg atccatcact ggctgccatt
4681 gtcgcacagg acttgttgtc cccgtcggaa atggacgtgg gggactacgt gatcagtgtc
4741 aaggatggtc tcccctcagg attcccatgc acctcacaag tgaatagcat aaatcattgg
4801 atttataccc tgtgcgccct ttcggaagtc acaggtttgg cccctgatgt tctgcaatcc
4861 caatcttact tttccttcta tggggatgat gaaattgtat caactgatgt ggaatttgac
4921 ccaacaaaac tcacccaagt gcttagagag tatggcttga aacccacgcg gcctgacaaa
4981 tcagaagggc ctatcatagt gaagcatcaa atagatgggt tagtttttct gaggcgcact
5041 atatcaaaag atgctgctgg ctaccaaggg cgcttggacc gcaactccat tgaaagacaa
5101 ttatggtgga cccggggccc aaaccatgat gatccctttg agacattaat accccatcaa
5161 caaagaaaga ttcaattgat ttccttactt ggtgaggctg cgctccacgg agagaaattc
5221 tatagaaaga ttgccaacag agtcatacag gaagtcaaag aggggggcct tgagctctat
5281 ataccaggtt ggcaggccat attccgctgg atgcgtttcc atgacttgag cttgtggaca
5341 ggagatcgca atctcctgcc cgattatgta aatgatgatg gcgtctaagg acgccccctc
5401 aaacatggat ggcactagtg gtgccggtca gctggttcca gaggttaatg cagctgaacc
5461 cctacccctt gagccggtgg tgggtgccgc aactgcggtg gccactgctg ggcaagttaa
5521 tttaatagac ccctggatca tgaataattt tgtccaagcc cctgagggcg aattcactat
5581 ctcccctaac aatacccctg gagatatttt atttgatttg caattgggac cacatcttaa
5641 cccttttctt caacatctgt cccaaatgta taatggttgg gtgggaaaca tgagagttag
5701 agtcatgctc gcaggaaatg cgttcactgc tggtaaaatc ataatttgtt gtgtcccacc
5761 tggcttttca tcccaaaata tatcaattgg acaagccaca atgttcccac atgttatagc
5821 tgatgtgaga gtattagaac ctattgaaat cccccttgat gatgtacgca atgtcttgtt
5881 tcacaccaat gaaagccgcc caactatgcg attactctgt atgctgtaca cacccctccg
5941 cgctggaggc gcttcatcag gcacggaccc ttttgtcatt gcaggtcgtg tcctaacctg
6001 cccttcccct gatttcaatt ttttgttcct cgtacctcct agcgtggaac agaagactag
6061 gcaattgact gtacccaata tacccttgaa taatttggcc aactccagag tgcctgcaat
6121 gataaataag atgacaatct ccactgatca aagtcaggta gtccagttcc aaaatggtcg
6181 ttgcacactc gaggggcaac ttttgggcac aacccctgtc tcagctagtc aagtggcccg
6241 catacgcggt aaagttttct ccacagcatc tggaaaaggg ctcaatttaa ctgaattgga
6301 tgggaccccc tatcatgcat tcgagagccc agcccccctt ggttttcctg acataggggc
6361 ttgtgattgg catgtgtcaa ctttcaaggt ggatcaaaat ctttcagggg accccatgtc
6421 caggctagat ataaaacaaa atgccccgtt tgcaccacat cttggttcca ttgaatttac
6481 ctctgaccag gaaccaaccg gggatcaatt gggcacacta gcttgggtct ccccttccac
6541 tagtggagct agggtcgatc cttggaaaat tccatcatat ggttcaactg taactgagtc
6601 cactcacctg gcaccaccta tctttccgcc aggttttggt gaagccatag tctatttcat
6661 gtcagacttt cccattgtgt caggcaacac tgctcaagtt ccctgtacct tacctcaaga
6721 atttgtttca cactttgtgg aacaacaggc accaattcga ggtgaagctg ccctattgca
6781 ttatgtagac ccagacaccc accgtaattt gggagagttc aaattgtacc ctgatgggtt
6841 catcacctgt gtgccaaata caggcggtgg cccccaaaat cttcctataa atggggtctt
6901 tgtcttttct tcttgggttt ctagatatta tcaattaaag cctgtgggaa cagccggtcc
6961 ggccaggagg cttggtgtga gaagggtata atggctcaag ccattatagg agcaattgcc
7021 gccaccgctg ctggcagcgc agtgggggca ggtatccaag ctggcacaga agcagccctg
7081 caatatcaga gatttcaaca agatctcacc ctacaggaga actcttttaa acatgatgag
7141 agaatgttgg gtttacaaat tgagggatct aatgctttat tacaaaagaa tctttccact
7201 cgctataacc tattagttgg tgcaggtctt tcttcggctg atgctgcaag gtctattgtt
7261 ggggcccctg tgacaaaaat tgtggattgg aatggggtga ggattgccgc ccccatgtcc
7321 accgccacca ctctccgatc tggcaatttt atgagcatac cagtcacgcc gagaaaggag
7381 tcccaaaatc tgtcagcacg ttctgtaggt cttactaatc ccaattatga ttcatctact
7441 atgatctcta gaacaaccca gtgggtggag tcacaaaatt cagctagaaa tttatcacct
7501 tttcatagct cagccctaag gaccacatgg gtaactcctc ctggctctac ttctacttca
7561 actttttcta ctgtctcttc ggtgccacga ttctttaaca ccgagcgcct tcccttgttc
7621 gcaaacaata ggaagtag
//