Typing tool
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Typing tool
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Complete norovirus genomes
| LC597134 | GII.3 | |
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| GII.P16 |
ORF1: 1..2961
ORF2: 2942..4588
ORF3: 4588..4940
LOCUS LC597134 4940 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/2016/GII.3[P16]/STM271 genes for nonstructural
polyprotein, VP1, VP2, partial and complete cds.
ACCESSION LC597134
VERSION LC597134.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 4940)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..4940
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/2016/GII.3[P16]/STM271"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2016"
CDS <1..2961
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BCN97312.1"
/translation="AFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAIRNVTIKRC
RIIYGGSTYDLESDGKGKVLVEKVNNTSVQTNNELAGALHHLKHARIRYYVKCVQEAV
YSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKPEDDEFVISSKDIK
EEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEE
LAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKG
KLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEA
FGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPL
AARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIG
VHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSS
NTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTI
INVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFTGKLADQASKAN
LMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEM
KAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVR
FSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALS
EVTKLSPDIIQANSMFSFYGDDEIVSTDVKLDPEQLTAKLKEYGLKPTRPDKTEGPLI
ISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPI
QLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGD
RNLAPNFVNEDGVE"
CDS 2942..4588
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97313.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALDPVVGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPTDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADAATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDNEADFQQWTLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 4588..>4940
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97314.1"
/translation="MAGAFIAGLAGDMLTNTVGSLINAGAGAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWSG
TRYWAPNATSTTSMSG"
ORIGIN
1 gcattcagac aattggctgc agaaaacaag tatggattgg tggataccat gaaagttggc
61 aatcaattaa aaggagtgaa aaccatggaa gaactcaaac aagcaatcag gaatgtgacc
121 atcaagaggt gccggatcat ctacggtggc tccacatatg accttgaatc tgatggcaag
181 ggcaaagttt tggtggaaaa ggtcaacaac acctctgtac agaccaacaa cgagttggcc
241 ggggccctgc accatctcaa acacgcccga atcaggtact acgttaaatg tgtgcaagaa
301 gcagtctatt ctatcataca aattgctggc gctgcgtttg tcaccacgcg cattgcacgc
361 cgcatgaaca tacaagaact ctggtcgaag ccacaattag atcaaaatga atcagagact
421 aaggaagagg cccccaagcc agaagatgac gagttcgtca tatcttctaa ggacatcaag
481 gaggaaggaa agaagggcaa aaataaaact ggccgtggca agaaacacac tgcattctcc
541 agcaagggct tgagcgatga ggagtatgac gagtacaaga ggataagaga agagagaaat
601 gggaagtact ctatagagga gtatcttcaa gacagagaca ggtactatga ggagctcgcc
661 attgccaagg ccacggaaga agacttctgt gaagaggagg agatcaaaat ccgtcagaga
721 attttccgtc ccaccaggaa acaaagaaag gaagagagag ccacattagg gttagtaaca
781 ggttcagaaa tcagaaaaag aaaccctgat gacttcaaac ccaaagggaa gctgtgggcc
841 gatgacaaca gaagtgttga ctacaatgag aaactggact ttgaggcccc cccaagcata
901 tggtctagga ttgtgagctt tggttctggc tggggcttct gggtatcacc aagcctgttc
961 ataacatcaa ctcatgtaat ccccgcaggc ataacagaag catttggagt tcccatcaaa
1021 caaattcaga ttcacaaatc aggtgaattt tgccgattca gattcccaaa accaattaga
1081 ccagatgtga caggaatgat cttggaagaa ggtgcgcctg agggcaccgt ggcaactgtg
1141 ctcatcaaac gccccaccgg agagctcatg cctcttgcag ccagaatggg aacacacgca
1201 accatgaaaa ttcaaggccg catggttggc ggacaaatgg gtatgttgct cactggatca
1261 aatgctaaag gaatggattt gggaacaact cctggtgact gtggctgtcc ttacatctat
1321 aaaaggggca atgactatat agtcattggg gtgcacaccg cagcagcccg tggtggaaac
1381 accgtcatct gtgccacaca gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac
1441 aaaggaacat actgtggggc acccattcta ggccctgggg gtgcaccaaa attgagcacc
1501 aaaaccaaat tttggaggtc atcgaacacg ccccttccac cagggacata tgagcctgcc
1561 tacctcggcg gccgtgatcc gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga
1621 gatcagttga agccattcac tgaacccagg ggcaaacctc caagaccaag tgtattggaa
1681 gcagccaaac aaaccatcat caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg
1741 acatacgcac aggcgtgtgc ctcacttgac aaaaccacct ccagcgggca cccccatcac
1801 gcccgaaaga atgaattctg gaatggtgag accttcactg gcaaattggc agatcaagca
1861 tcaaaagcaa acctaatgtt tgaggagggg aaacacatga caccagtgta tacagcagca
1921 ctcaaggacg agctagtcaa gactgagaaa atctatggaa agatcaagaa gagactgctc
1981 tggggctctg acttgtccac catgatccgg tgcgctaggt catttggtgg gctcatggac
2041 gagatgaagg cacactgcat atcactccca gtccgagttg gcatgaatat gaatgaagat
2101 ggcccaataa tatttgagaa acattccaga tacaaatacc actatgatgc agactactct
2161 cgttgggatt caacacaaca gagggcagta ctggcagcag ccttagaaat catggtcaga
2221 ttctctgcag aaccacaatt ggcacaaata gtcgctgagg atctgctggc ccctagtgta
2281 gtagatgtag gagactttaa aatcacaata aatgaagggc tcccctctgg tgtgccatgc
2341 acttctcaat ggaactccat cgcacactgg ctgctaactc tctgtgcctt gtctgaagtc
2401 accaaactgt cccctgacat tatacaggca aattccatgt tctcatttta cggtgatgac
2461 gagattgtca gcaccgacgt aaaattggac cctgaacagt taaccgccaa attgaaggag
2521 tacggcctga aaccaacccg cccagacaaa accgaggggc ccctgatcat cagtgaagat
2581 ctgaacggac tcactttcct ccgaaggacg gtgactcgtg acccagctgg ctggtttgga
2641 aaactggacc aaagctcaat tttgaggcag atgtactgga ctagaggacc aaatcatgaa
2701 gaccccaatg agacaatgat accccattct caaagaccca tacagctcat ggcactgctt
2761 ggtgaagcct ctcttcacgg accctctttc tacagtaaaa tcagtaaatt ggtcataact
2821 gaactcaaag aaggtgggat ggacttttac gtaccaaggc aggaacccat gttcaggtgg
2881 atgaggtttt ctgacttgag cacgtgggag ggcgatcgca atctggctcc caattttgtg
2941 aatgaagatg gcgtcgaatg acgctgctcc atctaatgat ggtgccgccg gcctcgtacc
3001 agagatcaac aatgaggcaa tggcgctaga tccagtggtg ggtgcagcga tagcagcacc
3061 ccttactggc cagcaaaaca taatagatcc ctggattatg aataactttg tgcaagcacc
3121 tggtggtgaa tttacagtgt cacctaggaa ctcccctggt gaagtgcttc taaatttaga
3181 attaggccca gaaataaatc cctatctggc tcaccttgct aggatgtaca atggttatgc
3241 aggtgggttt gaggtgcagg tggtcctggc tggaaatgcg tttacagcgg ggaaagtgat
3301 ctttgcagct atacccccca atttcccaac cgacaatttg agtgcagcac aaattacaat
3361 gtgtccccat gtgattgtgg atgtcaggca gctagagcca atcaacctcc cgatgcctga
3421 tgtccgcaac aacttcttcc attacaatca aggttctgat tcgaggttgc gcttaattgc
3481 aatgttgtat acacccctta gggcaaataa ttctggagat gatgttttca ctgtgtcatg
3541 tagggtattg actagaccca gccctgattt ctcatttaat ttcctcgtcc cgcccactgt
3601 ggaatcaaag acaaaacttt tcaccctccc tatcttgact atctctgaga tgtctaattc
3661 tagatttcca gtgccaattg attctctgca taccagtcca actgacaaca ttgttgtcca
3721 gtgccaaaac gggcgcgtca cccttgacgg tgagctaatg ggcaccaccc agctcttgcc
3781 gagtcagata tgtgctttta ggggtgtgct caccagatca acaagcaggg ccagtgacca
3841 agctgacgca gcaaccccca gactcttcaa ctactactgg catatacagc tagacaacct
3901 aaatgggacc ccgtatgatc ctgcagagga cataccagct cctcttggga cgccagattt
3961 tcggggtaaa gtctttggcg tggccagcca gagaaaccct gacagtacaa caagggcaca
4021 tgaggcaaaa gtggacacaa catctggccg cttcacccca aaattgggct ccctagaaat
4081 atccactgaa tctggtgatt ttgatcaaaa ccaaccaaca agattcaccc cagttggcat
4141 tggagttgat aatgaggcag actttcaaca atggacctta cctgactatt ctggtcagtt
4201 cactcacaac atgaatctgg ccccagctgt cgcccccaat ttccctggtg aacagcttct
4261 tttcttccgc tcacagttgc catcctctgg tgggcggtcc aatggtatcc tagactgcct
4321 ggtcccccag gaatgggtcc agcatttcta tcaggaatcc gcccctgccc aaacgcaggt
4381 ggctctggtc aggtatgtca accctgacac tggtagggtg ttatttgagg ctaagctgca
4441 taagctgggc tacatgacca tagctaagag tggtgattct ccaataactg tgcccccaaa
4501 tggatacttt aggtttgaat cttgggtgaa tcccttttac acactagccc ccatgggaac
4561 tgggaatggg cgtagaagga ttcaataatg gctggagcct ttatagcagg attggctggt
4621 gacatgctca caaacactgt agggtctttg attaatgcag gggctggtgc tattaatcaa
4681 aaagttgatt ttgaaaataa taaatattta caaaatgcat cctttaatca tgataaggag
4741 atgttaaatg cacaaattga ggcaacaaag aggctacaag ctgacatgat tgctatcaaa
4801 cagggggctt tgaccgctgg cggcttctcc cccactgatg cagcccgcgg ggctattaac
4861 gcccccatga caaaagttct ggattggagt gggaccaggt actgggcacc aaatgccacc
4921 tccacaactt caatgtcagg
//