Typing tool
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Typing tool
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Complete norovirus genomes
| LC597126 | GII.13 | |
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| GII.P16 |
ORF1: 1..5091
ORF2: 5072..6700
ORF3: 6700..7431
LOCUS LC597126 7510 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2016/GII.13[P16]/STM95 RNA, nearly comlete
genome.
ACCESSION LC597126
VERSION LC597126.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7510)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7510
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2016/GII.13[P16]/STM95"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2016"
CDS 1..5091
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BCN97289.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
AKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTVTTFNFDRNRIAAFRQLAAENKYGLVDTMRVGNQLKGVKTME
ELKQAIKNVIIKRCRIIYGGSTYDLESDGKGRVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSILQIAGAAFVTTRIVRRMNIQELWSKPPLDQNESEAEKEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERVTLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRSDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKTHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5072..6700
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97290.1"
/translation="MKMASNDAAPSNDGAASLVPEAINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANSGDNWDQNLLQLTYPSGASYDPTDEVPAPLGTQDFSGILYG
VLTQDNVSEGTGEAKNAKGVYISTTSGRFTPKIGTIGLHSITENVHPNQQSRFTPVGV
AQNENTPFQQWVLPHYAGALALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLRGQDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGTYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6700..7431
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97291.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRAQVKSPSNSSQRTAAPSSIRSLSTQSTSLGSTS
SGGSSTTSSSSRTADWVQQQRALSPYMQGALQTAYVTPPSSRASSMSSVSTVPKGVLD
SWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa
61 tcttcaggtg aaggcttatt cacaaacatg tcttccacct taaagaaagc cctcggggcc
121 cggcccaaac agcctgcccc gagggacaac tcacaaaaac ccccaagacc accaactccc
181 gagttggtca agaggatacc ccctccccca cctaatggag aagaagaaga accagtcatt
241 aggtatgagg ttaagagtgg aatctctggc ctgcccgagc tcacaacagt ccctcaaccg
301 gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa cagggaggcc
361 aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata ccactatggt
421 ctgtacgtgg agaaaggcct agtgttgggt gtgcacaaac cacctgcagc tataagcatg
481 gcaaaagtgg agctgacgcc gttgtcattg tactggcgtg tggtctacac cccccaatac
541 ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta cactgccttt
601 gacaacaact gctatgcctt ttgctgttgg gtattagacc tcaatgactc atggcttaac
661 aggaggatgg tgcaaagaac aacaggcttc ttcagacctt atcaagagtg gaacagaaaa
721 cccctgccca ctatggatga ctccaaaatc aagaaggtgg caaacatatt cctgtgttca
781 ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa gccattaaac
841 atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga gtctctgata
901 ttacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc tatgatcgct
961 cctttacttg gagactacga gttgcaaggg ccagaagacc ttgccgttga gctcgtacct
1021 gtagtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat tggaaaaatg
1081 ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta tggcttagag
1141 atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aagaggccaa cgagctagcc
1201 atggtgagag ctatagagga tgctgtactg gatcttgagg caatagaaaa taatcacatg
1261 acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaacact agacatggag
1321 gaggaaaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt tgggacgatc
1381 aacgccctgc tggctcgaat agcagcggct aggtcactag tccacagggc caaggaggag
1441 ttatctagca ggataagacc agtggttgtt atgatatctg gtaaaccagg gataggcaaa
1501 actcatctgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg ggatcaaaga
1561 gtcgggctca taccgagaaa cggtgtggac cattgggatg catacaaagg tgagagagtc
1621 gtgctgtggg acgactatgg catgagcaac cccattcatg atgctctgcg catacaagaa
1681 ttggctgata cgtgccccct taccttaaat tgtgacagaa tcgaaaataa gggaaaagtt
1741 tttgacagtg aagtcataat aatcacaaca aaccttgcca atccagctcc acttgattat
1801 gtcaactttg aggcctgttc caggagaatt gacttcctgg tgtacgccga ggcaccagaa
1861 gtagaaaagg cgaaacgaga ctttcctggt caaccagata tgtggaagga cgccttcaag
1921 tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga caagaatggc
1981 aacaccccac atgggaaagg agtgatgaaa accctcacca ccggttccct gatcgcccgt
2041 gcatcaggct tactgcatga gagaatggat gaatttgaac tccaaggccc cacagtcacc
2101 accttcaatt ttgaccggaa cagaatcgct gcattcagac aattggctgc agaaaacaag
2161 tatggattgg tggacaccat gagagttggc aatcaattaa aaggggtgaa aaccatggaa
2221 gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat ctacggcggc
2281 tccacgtatg accttgaatc tgatggcaag ggcagagttc tggtggaaaa ggtcaagaac
2341 acctctgtac agaccaacaa cgagttggcc ggagccctgc atcacctcaa acatgcccga
2401 atcaggtact atgtcaaatg tgtgcaagaa gcagtctact ctattttaca aatcgccggc
2461 gctgcgtttg tcaccacacg catagtacgc cgcatgaaca tacaagagct ttggtcgaag
2521 ccaccattag accaaaatga atcagaggct gagaaagagg cccccaagtc agaagatgac
2581 gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa aaacaaaact
2641 ggccgtggca agaaacatac tgcattctct agcaagggct tgagcgatga ggagtatgac
2701 gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga gtatcttcaa
2761 gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga agacttctgt
2821 gaggaggagg agatcaaaat ccgtcagagg atcttccgtc ccaccaggaa gcaaaggaag
2881 gaagagaggg tcacactagg gctagtaact ggttcagaaa tcagaaaaag aaaccctgat
2941 gacttcaaac ctaaagggaa actgtgggct gatgacaaca gaagtgttga ctacaatgag
3001 aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagttt tggttctggt
3061 tggggcttct gggtgtcacc aagcctgttc ataacatcaa ctcacgtaat ccctgcaggc
3121 ataacagagg catttggagt ccccatcaaa caaatccagg tccacaaatc aggtgaattt
3181 tgtcggttca gattcccaaa accaattaga tcagatgtga caggaatgat cttggaggaa
3241 ggtgcgcctg agggcaccgt ggcaaccgtg ctcattaaac gccctaccgg agagctcatg
3301 ccccttgcag ccagaatggg aacacacgca accatgaaaa ttcagggccg catggttggc
3361 gggcagatgg gtatgttgct cactggttca aatgctaaag gaatggattt gggaacaact
3421 cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat agtcattggg
3481 gtgcacacag cagcagcccg tggtggaaac accgtcatct gtgccacaca gggaagtgag
3541 ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggggc acccattcta
3601 ggccctgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc atcgaacacg
3661 cctcttccac cagggacgta tgagcctgcc tacctcggtg gccgcgaccc gcgtgttaag
3721 ggtgggccct ccttgcagca ggtaatgaga gaccagttga agccatttac cgagcccagg
3781 ggtaaacctc caagaccaag tgtgttggaa gcagctaaac aaaccatcat caatgtcctc
3841 gaacaaaccc tggaccctcc acaaaaatgg acatacgcac aggcgtgtgc ttcacttgac
3901 aaaaccacct ccagcgggca tccccaccac gtccgaaaga atgaattctg gaatggtgag
3961 accttcactg gtaaattggc agaccaagca tcaaaagcaa atttaatgtt tgaggaaggg
4021 aaacacatga caccagtgta tacagcagcc ctcaaggatg agctggtcaa gacagacaaa
4081 gtctatggaa agatcaagaa gagactgctc tggggctctg acttgtccac catgatccgg
4141 tgcgccaggt cttttggtgg gctcatggat gagatgaaaa cacactgcat atcactccca
4201 gtccgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagaa gcactccaga
4261 tacaagtatc actatgatgc agattactcc cgctgggatt caacacaaca gagggcagta
4321 ctagcagcag ccttggagat catggtcagg ttctctgcag agccacaatt ggcacaaata
4381 gtcgctgagg atctgctggc ccccagtgtg gtagatgtag gagactttaa aatttcaata
4441 aatgaagggc tcccctctgg tgtaccatgc acttctcaat ggaattccat cgcacactgg
4501 ctgctaaccc tctgcgcctt gtctgaagtc accaaactgt cccctgacat tgtacaggca
4561 aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat aaaattggac
4621 cctgaaaagt taaccaccaa attgaaggag tacggcctga aaccaactcg cccagacaaa
4681 accgaaggac ccctgatcat cagtgaggat ttgaacggac tcactttcct ccggaggacg
4741 gtgactcgtg acccagctgg ctggtttgga aagttggacc aaagctcaat attgaggcag
4801 atgtactgga ctagaggacc aaatcatgaa gaccccaatg agacaatgat accccactct
4861 caaagaccca tacagctcat ggcactactt ggtgaggcct cccttcacgg accctctttc
4921 tacagcaaaa ttagtaagtt ggtcataact gaactcaaag aaggtgggat ggacttttac
4981 gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgacttgag cacgtgggag
5041 ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg acgccgctcc
5101 atcgaatgat ggtgcagcta gtctcgtacc agaggccatt aatgagacta tgccattgga
5161 acccgttgct ggcgcatcta ttgctgcccc agtggcggga caaactaaca taattgaccc
5221 ctggataaga acaaattttg tgcaagcccc taatggagag tttacagtgt caccgagaaa
5281 ttcccctgga gagattttat taaatttaga gttaggacca gatttgaatc cttatttggc
5341 ccatctatca aggatgtaca atggatatgc tggaggtgtt gaggtgcaag tgcttcttgc
5401 tgggaacgcg ttcacagcag gaaagatatt atttgcagca atcccaccca actttcctgt
5461 agatatgatc agcccagctc aaattactat gcttccccat ttgattgtag atgttaggac
5521 attggaacct attatgatac ccttacctga tgttaggaat gtgttctatc attttaataa
5581 tcaaccccaa cctaggatga gattagtggc tatgctctat accccattga gatctaatgg
5641 ttcaggagat gatgtcttta ctgtgtcttg tagagtgttg actaggccaa cccctgactt
5701 tgaattcatt tacctagtgc ctccctctgt agagtccaaa actaaaccat tcacacttcc
5761 aatattgacc atttctgaac taaccaactc ccggtttccc atcccaattg agcaactgta
5821 cacggcccca aatgagaata atgttgtaca gtgtcaaaat ggaaggtgca ccttggatgg
5881 agagcttcag ggcaccaccc agctattatc aagtgcagtc tgctcgtaca ggggcaggac
5941 tgtggctaac agtggggaca attgggacca gaatttgctc cagctgacct acccaagcgg
6001 tgcaagctat gaccccactg atgaagtacc agcacccttg ggcacccagg atttcagtgg
6061 gatattgtat ggggtgttaa cccaagataa tgtgagtgag ggtacagggg aggccaaaaa
6121 tgctaaggga gtatacatat ccaccaccag tggaagattc accccaaaaa ttgggacaat
6181 tggattgcat tcaataactg aaaatgtgca ccccaatcag caatcacggt tcacccccgt
6241 tggagtcgct cagaatgaaa acaccccctt ccagcaatgg gttctaccac actacgcagg
6301 tgctcttgct ctaaatacca atttggcacc cgctgttgcc ccgactttcc ctggcgagca
6361 attactgttc ttcaggtccc gtgttccatg tgttcaaggt ctgcgggggc aggatgcttt
6421 catagattgt cttctacctc aagagtgggt gaaccatttt tatcaagagg ctgctccctc
6481 ccaagcagac gttgccctca tcaggtatgt caaccctgat actggtcgca cgttgtttga
6541 ggccaaattg cacaggtcag gtttcattac tgtatcacac actggtacct accctcttgt
6601 ggtcccccca aatggtcatt tcaggtttga ttcttgggtt aaccaattct actcactcgc
6661 ccccatggga actggcaatg ggcgtagaag agttcaataa tggcaggagc attcatagct
6721 ggtctagccg gtgacatgct gacttctgct gttggttcac tgacctctgc aggagccaat
6781 gccatcaatc agaaattgaa ttttgattac aataaacaac tccaaaatgc atcctttcaa
6841 catgataagg aaatgttgca ggcccaaatt gatgctacaa agaagctcca gtcagagatg
6901 attgcaatta agcatggggt tctgaccgcg ggcggctttt ccccagctga tgcagccaga
6961 ggggcagtca acgccccaat gactcgagtg ttggattggt cagggacacg ctactacgct
7021 ccaaattctg tgcaaaccac cagttattct gggcaattca ccccctcgcc tgtccatcgg
7081 gcgcaggtga agtccccttc caattcgtct cagcggactg cagctccaag cagtatccgc
7141 agcctgtcaa cccaatcaac ttctttaggc tctacctcct caggggggtc ctctacaacc
7201 tcctccagtt cgaggacagc agactgggtg caacaacaaa gggctcttag cccgtacatg
7261 cagggagccc tgcagacggc atacgtcaca ccgccgtcta gtagggcttc cagtatgagc
7321 tctgtctcaa cagtgcccaa aggggttttg gactcctgga cacctgtgtt taacacacgc
7381 aggcagccgc tgtttgcaca cctcaggaag aggggggagt cacaggctta gtgaaaagga
7441 taatcagctt ttaaatgtga ttttattttc cttttaaaaa aaaaaaaaaa aaaaaaaaaa
7501 aaaaaaaaaa
//