Typing tool
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Typing tool
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Complete norovirus genomes
| LC597125 | GII.3 | |
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| GII.P12 |
ORF1: 1..5090
ORF2: 5071..6717
ORF3: 6717..7481
LOCUS LC597125 7526 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2016/GII.3[P12]/STM92 RNA, comlete genome.
ACCESSION LC597125
VERSION LC597125.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7526)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7526
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2016/GII.3[P12]/STM92"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2016"
CDS <1..5090
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BCN97286.1"
/translation="SNDASAAAAANSNNDNAKSSSDGVLSSMAVTFKRALGARQKQPP
PREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDETNT
AFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKV
ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCR
RMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPL
NILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTIGSLIARASGLL
HERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMSELK
QALKNVAIKSCQIVYGGCTYRLESDGKGDVRVDRVQNATVQTNNELAGALHHLRCARI
RYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQ
DGEEFVISSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRP
PKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKATSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMI
RCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKILINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5071..6717
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97287.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
IRFTPVGIGVDNETDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
CDS 6717..7481
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97288.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKNLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFDLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 cgtctaacga cgcttccgct gccgctgctg ctaatagcaa caacgacaac gcaaaatctt
61 caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc ggggcgcggc
121 aaaaacagcc tcccccgagg gaaataccac aaaggcctcc acggccaccc accccagaac
181 tggtcaaaaa gatccctcct cccccaccca acggggagga tgagctagtg gtctcttata
241 gcgccaaaga tggcgtttct ggtttgcctg aactcaccac tgtctggcaa ccggatgaga
301 ccaacacggc attcagtgtt ccccctctca accaaaggga gaacagggac gccaaggagc
361 cgctgaccgg aacaatcctg gaaatgtggg acggggagat ctatcattac ggtctgtatg
421 tggagcgagg ccttgtactt ggtgtgcaca aaccaccagc tgctatcagc ctcgccaagg
481 ttgaactagc accactctct ctgttttgga ggccagtgta cacaccacag tatctcatct
541 ctccagacac tcttaggaga ctgcatggag agtcgttccc ctacacagcc tttgacaaca
601 actgctatgc cttctgttgt tgggttctgg acctaaacga ctcgtggttg tgcaggagaa
661 tgatccagag aacaactggc ttcttcagac cttaccaaga atggaacagg aaacccctcc
721 ccaccatgga tgactctaaa ttgaaaaagg tagccaacat attcttgtgt gcgctatctt
781 cgctattcac taggcccatc aaagacataa taggaaaggt gagaccgctc aacatcctta
841 acatcctggc ctcatgtgat tggacttttg caggcatagt ggaatctttg atcctcttgg
901 cagagctctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc gcccccttac
961 taggtgacta cgaactgcag gggcctgagg accttgcagt ggaactcgta ccagtagtga
1021 tgggagggat tggtttggtg ttaggattca ccaaagaaaa gatcggaaaa atgttgtcat
1081 ccgctgcttc caccttaaga gcttgtaaag accttggtgc atacggactg gaaatcctaa
1141 aattggtcat gaaatggttc ttcccaaaga aagaggaagc aaatgagcta gctatggtga
1201 ggtccatcga ggatgcggtg ctagacctcg aagcaattga gaacaaccac atgactgccc
1261 tcctcaaaga caaagacagc ttggcaacct acatgaggac ccttgacctc gaggaggaga
1321 aagccaggaa gctttcaacc aagtctgctt cacctgacat cgtgggcaca atcaacgctc
1381 ttctggcgag aatcgccgct gcacgttccc tggtgcatcg ggcgaaagag gagctctcca
1441 gcagaccaag acctgttgtt gttatgatat caggtaggcc agggataggg aaaactcacc
1501 ttgccaggga gctagctaag aagatcgcag cttcactcac aggggaccag cgcgtgggtc
1561 tcatccctcg caatggcgtt gaccactggg atgcatacaa gggagaaaga gtcgtcctat
1621 gggacgatta tggaatgagc aatcccatcc acgacgccct caggttacag gaacttgctg
1681 acacctgccc ccttacgcta aactgtgaca ggattgagaa caaaggaaag gtctttgaca
1741 gtgatgccat aatcatcacc actaatctag ccaacccagc accattggac tatgtcaact
1801 ttgaagcatg ctcgaggcgc attgacttcc tcgtgtacgc agaagcccct gaggtcgaga
1861 aagcaaagcg tgatttccca ggtcaacctg acatgtggaa gaacgcattt agctctgact
1921 tctcgcacat aaaactggcg ctggctccgc aaggtggttt cgacaagaac ggaaacaccc
1981 cacacgggaa aggcgtcatg aaaaccctca ccattggttc cctcatcgcc cgagcatcag
2041 ggctactcca tgagaggttg gatgagtacg agctgcaggg cccaactccc accaccttta
2101 attttgaccg caacaaggtg cttgcgttca gacaacttgc tgccgaaaac aagtatggat
2161 tgctggacac aatgagagtt ggaaaacagc tcaaggatgt taagaccatg tcagagctca
2221 aacaggcact caagaatgtc gcaatcaaga gttgtcagat agtgtatggt ggctgcacct
2281 acaggcttga gtctgatggc aagggtgatg taagagttga cagagttcag aacgccactg
2341 tacagaccaa caatgagctt gccggcgcac tacaccatct taggtgcgcc agaatcagat
2401 attatgtcaa gtgtgttcag gaggccctgt attccatcat ccaaatcgct ggggctgcat
2461 ttgttaccac gcgcattgtc aagcgcatga acatacaaga tctctggtcc aagccacagg
2521 tggaggatac agaggaaatc gctagcaagg atgggtgccc aaaaccccag gatggtgaag
2581 agtttgtcat ctcatccgac gacatcaaaa ccgagggcaa gaaagggaag aacaagtctg
2641 gccgtggcaa gaagcacaca gcattttcaa gtaaaggtct cagtgatgaa gagtacgatg
2701 agtacaaaag aattagagaa gaaagaaatg gcaaatactc catagaggaa tacctccagg
2761 acagagacag gtattatgag gaggtggcca tcgccagggc aaccgaagag gacttctgtg
2821 aagaagaaga ggccaagatc cgacagagga tcttcaggcc aacaaggaaa caacgcaaag
2881 aggagagagc ctctctcggt ctggtcacag gttctgaaat caggaagagg aacccagacg
2941 acttcaagcc taaaggaaag ctgtgggctg atgatgacag gagtgttgac tacaatgaga
3001 gactcaattt tgaagcccca ccaagcatct ggtcgaggat agtcaacttt ggctcaggtt
3061 ggggcttttg ggtttccccc agcctgttca taacatcaac tcatgtcata ccccagggcg
3121 cacaggagtt ctttggtgta cccatcaaac aaatccagat acacaaatca ggtgaattct
3181 gccgcttgag gtttccaaag ccgatcagaa ctgacgtgac aggcatgatc ttagaagaag
3241 gtgcacccga agggaccgtg gtcacattac tcatcaaaag accaactgga gagctcatgc
3301 ccctggcagc cagaatggga acccacgcaa ccatgaagat acaagggcgc actgtcggag
3361 gtcaaatggg catgctccta acaggatcca acgccaagag tatggacctg ggcaccacac
3421 caggtgactg tggctgcccc tacatttaca agagggggaa tgactacgtg gtcattgggg
3481 tccatacagc tgccgcccgt ggaggaaaca ctgtcatttg tgccacccag gggagcgagg
3541 gagaagccac acttgaaggc ggtgatagca aggggaccta ctgcggtgca ccaatcttag
3601 gtccaggaag tgccccaaaa ctcagcacca agaccaagtt ctggaggtca tccacggcac
3661 cactcccacc tggtacctat gaaccagctt acctcggtgg caaggacccc agagttaagg
3721 gtggcccttc actgcaacaa gttatgaggg atcaactgaa accattcact gagcctaggg
3781 gtaggccacc aaaaccaagt gtgctagaag ctgccaagaa aaccatcgtc aatgtcctag
3841 aacagacaat tgacccacct caaaaatggt cgtttgcgca ggcatgcgca tcccttgaca
3901 aggccacttc tagcggtcat ccgcaccaca tgcggaagaa tgactgctgg aacggggagt
3961 ccttcacagg aaaattggca gaccaggctt ccaaggccaa cctgatgttt gaggagggaa
4021 agaacatgac cccagtttac acgggtgcgc ttaaggacga gctggtcaag actgacaaga
4081 tttatggtaa gatcaaaaag aggcttctct ggggttcgga cctggcgacc atgattcggt
4141 gcgctcgagc attcgggggt ctgatggagg aactcaaagc acattgtgtc accctacctg
4201 ttagggtggg tatgaatatg aatgaggatg gccctatcat ctttgagaga cactccagat
4261 ataaatatca ttatgatgct gactactccc ggtgggattc aacacaacaa agagccgtgt
4321 tggcagcagc cttagaaatc atggtcaagt tttccccaga gccacacctg gcccagaagg
4381 ttgcagaaga ccttctttct cccagcgtga tggacgtggg tgatttcaaa atattaatca
4441 atgagggtct cccctccgga gtgccctgca cctcccaatg gaattccatc gcccactggc
4501 tcctcactct ctgtgcactc tccgaggtta caaacctgtc ccctgacatt attcaggcta
4561 actctctctt ttctttctac ggtgatgatg aaattgtgag tacagacata aaattggacc
4621 cagaaaaact gacagcaaaa ctcaaggaat acgggttgaa accgacccgc cctgacaaaa
4681 ctgaagggcc tctcgtcatt tccgaagacc tgaatggcct aaccttcctg cggaggaccg
4741 tgactcgcga cccagcaggc tggtttggaa agttggaaca gagctcaata ctcaggcaaa
4801 tgtactggac taggggcccc aaccatgaag atccatctga aacaatgata ccacactccc
4861 agaggcccat acaattgatg tccttgttgg gtgaggcagc actccacggc ccagcattct
4921 acagcaaaat cagtaaactg gtcattgcag agttgaagga gggtggcatg gatttttacg
4981 tgccaagaca agagccaatg ttcagatgga tgagattctc ggatctgagc acgtgggagg
5041 gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga cgccactcca
5101 tctaatgatg gtgccgccgg cctcgtccca gagatcaaca atgaggcaat ggcgctagaa
5161 ccagtggcgg gtgcagcgat agcagcgccc ctcactggcc agcaaaatat aattgatccc
5221 tggattatga ataattttgt gcaagcacct ggtggtgagt tcacagtgtc tcctaggaat
5281 tcccctggtg aagtgctcct caatttggaa ttgggcccag agataaaccc ctatctggcc
5341 catcttgcta gaatgtataa tggttatgca ggtgggtttg aagtgcaggt ggtcctggct
5401 ggaaatgcgt ttacagcagg aaagataatc tttgcagcta taccccctaa cttcccaatt
5461 gacaatctaa gtgcagcaca gatcacaatg tgcccacatg tgattgtgga tgtcaggcag
5521 ttggaaccgg tcaacctccc gatgcctgac gttcgcaaca acttcttcca ctacaaccaa
5581 gggtctgatt cgagattgcg cttggttgca atgctgtata cacctcttag ggcaaataac
5641 tctggggatg atgttttcac tgtgtcttgt agagtgctga ctagacctag tcctgaattt
5701 tcatttaact tccttgtgcc ccccactgtg gagtcaaaga caaaaccctt taccctccca
5761 attctgacta tctctgaaat gtctaattct aggtttccag tgccgattga ttctctgcac
5821 accagcccaa ctgagaatat tgttgtccag tgtcaaaatg gacgcgtcac tcttgatggt
5881 gagttgatgg gcaccactca gctcttacct agtcaaatct gtgctttcag gggcgtgctc
5941 actagatcaa caagcagggc tagtgaccag gccgacacgg caacccctag attgtttaat
6001 tattattggc acatacaatt ggataatcta aatgggactc cttatgatcc tgcagaagac
6061 ataccaggcc ccctagggac accagatttc cggggcaaag tctttggcgt ggccagccaa
6121 agaaaccccg acagtacaac tagagcacat gaagcaaagg tggacacaac agctggtcgc
6181 ttcaccccaa aactaggctc attagagata tccactgaat ctggtgactt tgaccaaaac
6241 caaccaataa gattcacccc agttggcatt ggggttgaca acgagacaga cttccaacaa
6301 tggtccttac cagactactc tggccagttc actcacaaca tgaacttagc cccagctgtt
6361 gctcccaact tccctggtga gcagctcctt ttcttccgct cacagttacc atcttctggt
6421 gggcgatcca atgggattct agactgcctg gtcccccaag aatgggtcca gcacttctac
6481 caagaatcag cccccgccca aacccaggtg gctctggtta gatatgtcaa ccctgacact
6541 ggtagagtgt tgtttgaggc caagctgcac aaattaggtt tcatgactat agctaagaat
6601 ggtgactctc caataactgt ccccccaaat ggatacttta ggtttgaatc ttgggtgaac
6661 ccattttata cacttgcccc catgggaact gggaatgggc gtagaagagt tcaataatgg
6721 ctggtgcttt tatagcagga ttagctggtg atatattcac aaatactgta gggtctctag
6781 ttaatgcagg ggctaatgct attaatcaaa aagttgattt tgaaaataat aaaaacttgc
6841 aaaatgcttc cttcaatcat gataaggaaa tgttaaatgc acagattgag gcaacaaaga
6901 ggttacaggc tgacatgatt gctatcaaac aaggggtttt gaccgctggc ggcttttccc
6961 ccactgatgc agctcgcggg gcaattaacg cccccatgac aaaagtccta gattggaatg
7021 gaacaaggta ctgggcacca agtgccacct ctacaacctc gatgtcgggt ggcttcacaa
7081 accaggctgt gcacagaacc acgccaaatt ttaaaatgaa ccaggccccc agatccacac
7141 ccagcagtgg gtcttcagtg aggtcactct caacccaagt cactagtctg agctcacact
7201 cgtccgggtc gtctcgatct agcgggtcta cagttgctag ctcattacca tcctctaaca
7261 ggactaggga ctgggtcaat cagcaaaatt tcgatttgga accacacatg cctgggtcgc
7321 ttaggacggc ttttgtcact ccaccatcta gtacagcctc tagttcaggc actgtctcaa
7381 ccgtgcccaa aaatgttttg gactcctgga catctgcgtt taacacgcgc agacagccgc
7441 tattcgcaca ccttcgtaga aggggggagt caaatgttta gtgaaaaggt tgttttaaat
7501 ttgatttaaa ttgaatttga tttgga
//