Typing tool
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Typing tool
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Complete norovirus genomes
| LC597124 | GII.6 | |
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| GII.P7 |
ORF1: 3..5090
ORF2: 5071..6714
ORF3: 6714..7490
LOCUS LC597124 7508 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2015/GII.6[P7]/STM78 RNA, nearly comlete
genome.
ACCESSION LC597124
VERSION LC597124.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7508)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7508
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2015/GII.6[P7]/STM78"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2015"
CDS 3..5090
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BCN97283.1"
/translation="MASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKML
GAVPKGTTAPSTDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQ
NEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAA
ISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELN
DTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLL
GKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGP
EDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF
FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLAAFMKTLDLEEEKARKL
STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGKPGIGKTHMAR
HLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELAD
TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESPEI
EKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTA
RVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKGVK
TLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLR
LRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEV
AHGRWEVEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSI
EEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSD
IRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLI
TTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCS
ILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCP
YIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKA
PKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKP
PRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGES
FTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMI
RCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQ
RSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWN
SIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGL
VPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHEN
PYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFR
WMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5071..6714
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97284.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 6714..7490
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97285.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKTKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 agatggcgtc taacgacgct accactgcct ttggcagcca aaactctgtc aatgacagta
61 tcaacaccgc cccttctaat aaagaagagg ttggtgcatt ctccaacatc aaagttggat
121 ttaagaaaat gctgggtgcc gttcccaagg ggaccacagc acccagtacc gatcagcact
181 gcccctcagt taagatcggg accaagacat taacagtccc ccctgagccc ccaaatggtg
241 aagacaccgt gcagtttgat gcgaagtcgg aaactgtgcg cgggttacca gacttgacaa
301 cggtgcagaa tgaacacgaa aacacaccat acactgtccc cccattgagt gaaagggagc
361 atagaccagc tactgaaccg cttcctggca caatactgga gatgtgggat ggtgaattct
421 accattactc tgtgtacgtc agcggtggta aagccctagg ggttcacaag ccccctgcag
481 cgataagcct cgcgacgata gagctcacac ccatatctct ttattggagg cccgtttaca
541 cccccaacta tctggtttgc ccagatacgt tgaagggcct tgctggtgag aagttcccct
601 acacggcctt cagcaacaac tgttacaact tctgttgctg ggtgcttgag ctcaatgaca
661 cgtggcttag caggagaagc atctccagga ccactggctt cttcaaacca taccagtctt
721 ggaataggaa accccttcca accgttgacg atggaaagat caagaaggtg gccaacgcaa
781 ttctctgtgc acttggatca ctgttttcaa aaccaatcaa ggacctattg ggcaaactta
841 aaccattgaa cttgctgcac ttgctcgcat catgtgactg gacgtttgcg ggtatagtag
901 agacagtcat cctaatggcg gaacttttcg gcatcttttg gacaccgcca gatgtttcta
961 gtttcatagc ctccctgata ggtgattttg aattgcaagg gcctgaggac ctggctgtgg
1021 agcttgtacc cgtggtcatg ggtggcatag gaatggttct cggctttact gctgagaaga
1081 taggccgcat gctatcgtcc gctgcgtcaa cactacgggc gtgcaaagac ttggggaatt
1141 atgctcttga catattgaaa ctggttatga agtggttctt cccaaagaaa gaagagaaag
1201 ccgagatgga aaccctaagg gcgattgagg atgccgtcct ggacatggaa gctataggaa
1261 ataaccatct cacaaccctc cttaaggaca aggatagcct cgcggctttc atgaagactc
1321 tagacctaga agaagagaag gcaaggaagc tgtccaccaa atcatcctcg ccagacattg
1381 tcggcaccat taatgccata ttggctagga tagctgctgc caggtccctc ttgcacaagg
1441 ctaaagaaga aatgttcagc aggatcagac ccgtggttgt catgatctcg ggtaaacctg
1501 gcattggcaa gacccacatg gcaagacact tggctaagag tatcgccaac accatgagcg
1561 gcgaccagag agtggggctc gtcccacgca acggggttga tcattgggac gcctacaggg
1621 gagagagggt ggttttatgg gatgattatg gcatgggaaa ccctgtcaaa gatgccctaa
1681 cactgcaaga gctggccgac acctgcccag taactctaaa ctgtgatagg attgagaaca
1741 aggggaagat gtttgacagt gatgtcatca taatcacgac caatttagtc aacccagcac
1801 ccctcgatta tgtaaacttc gaggcgtgct ccagaaggat cgactttctg gtctatgcag
1861 agtcaccaga aattgagaag gttaagagag acttccccgg ccaacctgat atgtggaaag
1921 accacttcaa gcctgacttt tcccacataa aattgactct agccccacag ggtggatttg
1981 acaagaatgg caacaccccg catggtaagg gcaccatgcg atccctaacc caggggtccc
2041 tgactgcaag ggttgcaggt cttgttcatg agaggagaga cgagtttcag ctccagggga
2101 acgaccttca aacatataat ttcgatacta acagagtctc tgcatttagg aagctggccg
2161 cagacaacaa gtatgggatc atggagacta tgagagtggg cacagcgctc aagggtgtca
2221 agaccttgga agatctgaaa gttgcactga gggatgtgaa gttcaatgag tgtgagataa
2281 tttacagaaa ctccaaatac cgagtctctt ccaatggtaa aggttctgtc tctgttgaca
2341 aagttgagga ccaaacatcc cagaccgcaa acgaagtggg tgcagcactc cttagactca
2401 gacaggcaag agccagatac tatgtcagct gcttccaaga cctcgtttac actctaatac
2461 aggtcgccgg agcatcattc gttgtcaaca ggatctctaa aaggttctgc tgggagagat
2521 gggtcaaacc aaccgagacc caggaaacga gtgaatccga aaaggaagtg gcccatggca
2581 gatgggaggt tgagcccaag gacacagaac cagaaggtaa gaagggtaag aacaagaaag
2641 gaagaggcaa gaaacacaca gctttctcca gtaaaggcct gagtgatgag gagtatgacg
2701 agttcaagag aatcagagaa gaaaggaacg gaaaatactc cattgaggaa tacctgcaag
2761 accgggatcg ctactatgag gaagtggcag ttgcccgggc gacagaggag gacttctgtg
2821 aagaggagga ggccaagata agacagagaa tctttcgccc cacaaagaag cagaggaagg
2881 aagaaagggg ggtgcttggt ttggttactg gctcggacat caggaagaga agaccagacg
2941 attttcaacc gaagggcaac ctgtgggcag acgacaccag gagtgtggac tacaacgaga
3001 gacttgattt cgaggctccc ccgagtgtct ggtcaagaat agtcccattg ggcactggct
3061 ggggcttctg ggtctcatca aacctcctga tcacaacaac gcacgtccta cctaagggga
3121 ttaatgaact ctttggagtt gagatcaaac agattcagat tcataagtct ggagagttct
3181 gcaggttcag attcccaaga ccaattagac cagatgtcac agggctcgtg ttggaggaag
3241 gcgctccaga aggcactgtc tgctccatac tcgtaaagag acctacaggt gagatgatcc
3301 ccctggcagt gaggatgggc acgcatgcat ccatgaaaat acagggcagg accgtcggtg
3361 gccagatggg aatgctcctc acaggggcaa atgcgaagaa catggatctt ggcaccggtc
3421 ctggtgactg cggttgccct tacatctaca aacgtggcaa tgatatagtt gtcgcgggtg
3481 tccacaccgc agcagcccgg ggaggcaaca ctgtcatatg tgccactcaa gggcaagatg
3541 gggaagcagt ccttgaggga aatgagaatc ttggcactta ctgcggtgct ccaatcttgg
3601 gtccaggcaa ggcgcccaaa cttagtacga agaccaagtt ctggcgttca tcaccagacg
3661 ctttgccgcc aggcacttat gagcctgcct acttgggagg taaagaccct agagtggaaa
3721 aaggaccatc cctgcagcaa gtcatgaggg accagctaaa acctttcaca gaacccaggg
3781 gcaagccacc tagacctgca gtcttagaag aagccaaaaa gacagtgatg aatgttctag
3841 agcaaaccat tgaccctgct aaaccgtgga cctattccca agcatgtgcc tcactggaca
3901 agaccacttc cagtggtagc ccccatcatg ttaggaaaaa tgaccattgg aacggggaat
3961 ccttcactgg ccctctcgca gaccaagcat ccaaagccaa tctcatgtac gagcaggcca
4021 aacatgtgca gcccgtgtac acggccgcac ttaaagatga actagtcaaa actgataaga
4081 tctacaagaa gataaagaaa aggctcttat gggggtcaga tcttggtaca atgatcaggt
4141 gtgccagggc ctttggcggt ctcatggata gcatgaaggc aagctgcata gccctcccat
4201 gtagggtagg aatgaacatg aatgaagatg gccccatcat atttgacaag cattctaagt
4261 ataggtacca ttatgatgct gactattcca ggtgggactc aacccaacaa aggagcattc
4321 tctcggccgc tatggaagtg atggtgcggt tctctgctga accagagctg gcacaagtgg
4381 ttgcagagga cctcctggca cccagccaac tagatgttgg cgattttgtc atctcagtcc
4441 aggagggtct gccatcaggg gtcccatgca catcacaatg gaattcaata gcacactgga
4501 tcctaacctt gagtgcaatg gcagaagtgt cgggtctctc accagatgtc gttcaagccc
4561 actcctgttt ctcattctac ggtgatgatg agatcgtcag cactgacatc aaccttgatc
4621 ccatgaagtt gacacagaag ctcagagagt atggcctggt ccccacccga cctgacaaaa
4681 ctgagggtcc cctcgtaata actgaagatc tcaccggtct aacgttcctg cgcaggtcaa
4741 ttgcacggga cccagctggg tggtttggaa aattggacca agactcaatc ctcagacagt
4801 tgtactggac aaggggcccc aaccatgaga acccatatga gagcatggtc cctcattccc
4861 agcgggccac acaacttatg gcccttctcg gtgaggcttc actgcatggt ccccagtttt
4921 acaagaaagt tagcaagatg gttatcaatg agattaaaag tggtggtctg gaattctatg
4981 tgcccagaca agaggccatg ttcagatgga tgagattctc tgacctcagc acatgggagg
5041 gcgatcgcaa tcttgctccc gagggtgtga atgaagatgg cgtcgaatga cgctgctcca
5101 tcgaatgatg gtgctgccaa cctcgtacca gaggccacca atgaggttat ggcacttgag
5161 ccggtggtgg gagcttcaat tgctgctcct gtcgtcggcc aacaaaatat aattgacccc
5221 tggattagag aaaattttgt tcaggcacca cagggtgagt ttactgtttc accaaggaac
5281 tcacctggcg agatgcttct aaatcttgaa ttaggccctg agctcaaccc ttatctgagt
5341 cacttgtccc gcatgtataa cggctatgct ggtggtatgc aggttcaggt ggtcctagct
5401 gggaatgcgt tcacagctgg taaaatcatc tttgccgccg tcccaccaca tttccctgtt
5461 gagaacatta gtgcagccca aatcacaatg tgcccccatg taattgttga tgtaaggcag
5521 cttgagccag tgcttttgcc cctccctgac ataaggaata gattctttca ttataatcag
5581 gaaaataccc cccggatgag acttgtggct atgttgtata caccccttag agcaaattct
5641 ggtgaggatg tgtttacggt gtcttgcaga gttctgaccc gccctgcccc cgactttgag
5701 ttcacgttct tggtgccacc aaccgtggag tcaaagacta agccctttac actccctatt
5761 ctgactcttg gggagctgtc caactcaagg ttccccgctc caatagacat gttgtacact
5821 gaccccaatg aggcgattgt ggtgcaacca caaaatggca ggtgcactct agatggaaca
5881 cttcaaggga ccacccaact ggtgcccacc caaatttgct ccttcagggg cacgctaatt
5941 agccagacgt cgaggtctgc agattcaaca gattcagccc cacgggtgag gaaccaccct
6001 ctccacgttc agctgaagaa cctcgatggg acaccatatg acccaacaga tgaggtgcca
6061 gcagttttgg gtgccataga tttcaaagga actgtgtttg gggtcgctag ccaaagaaac
6121 accacaggga actctatagg tgcaacccgc gcccatgaag tgcacattga caccacaaac
6181 cctagataca ccccaaagct tggctctgtg ttgatgtatt ctgaatctac tgattttgat
6241 gatggacaac ccacccgctt tacccctatt ggcatgggag ccgatgattg gcaccaatgg
6301 gaattgcccg aatattctgg tcacctcact cttaacatga atttggcccc cgcagttgcc
6361 cctgccttcc ctggtgagcg cattctcttc ttcagatcag tggtgccgtc tgctggtggc
6421 tatggatcag gtcatataga ttgcctcatc ccacaggaat gggttcagca tttctaccag
6481 gaggccgctc catcacagtc cgcggtggct cttatcaggt atgtcaaccc tgacactgga
6541 agaaacatct ttgaggcaaa actgcataga gaagggttca tcactgtggc aaattctgga
6601 aacaacccca tagttgtgcc cccaaatggt tacttcaggt ttgaggcctg ggtcaatcaa
6661 ttctacacac tcacccccat gggaactgga caggggcgca gaagagttca ataatggcag
6721 gagctttctt agctggattg gcaggtgacg ccataacaag tggtgtcggg tccctaatca
6781 atgctggggc caatgcaatt aaccaaaagg tagaatatga ctttaataaa cagctccaat
6841 tggcatcctt caaacatgac aaagagatgt tgcaatcaca agtactggcc actaaacagc
6901 tccagcagga gatgatgaac ataaggcaag gggtcttgtc cgctggcggc ttttccccta
6961 cagatgccgc gagaggtgct gtgaacgcgc cgatgacaaa aattttggat tggaatggaa
7021 caaggtactt tgccccaaat agtatgaaga caaccagtta ttcgggccag ttttccagca
7081 accctgtgca taggcaaccc actttacccc gttctgaacc cccaaaaact aaggttaata
7141 gtgattctgc tagtgtgtat agttctgcat ctactgctcc ttcacaatca actcactcaa
7201 cggctttgac tgcggggtct agctcatcta ggacaacatc ctcttctgca gtagcttcca
7261 ccctatctag gactagtgac tgggtaagag gacaaaatga aaggcttagc ccgtttatgg
7321 atggtgctct ccaaacaact tttgtcacac caccatcgag caaagcttca tcatatgggt
7381 cggtctcaac cgttcccaaa gctgttttgg actcctggac tcctatgttc aatacccata
7441 ggcagcctct cttcgctcat gtgcgcaggc gaggggagtc acagatttag tgaaaagatt
7501 gattaggt
//