Typing tool
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Typing tool
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Complete norovirus genomes
| LC597123 | GII.6 | |
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| GII.P7 |
ORF1: 1..5086
ORF2: 5067..6710
ORF3: 6710..7478
LOCUS LC597123 7478 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2015/GII.6[P7]/STM52 RNA, nearly comlete
genome.
ACCESSION LC597123
VERSION LC597123.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7478)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7478
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2015/GII.6[P7]/STM52"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2015"
CDS <1..5086
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BCN97280.1"
/translation="ASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLG
AVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQN
EHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSLYVSGGKALGVHKPPAAI
SLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELND
TWLSRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLG
KLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFISSLIGDFELQGPE
DLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVVKWFF
PKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLAAFMKTLDLEEEKARKLS
TKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARH
LAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADT
CPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESPEIE
KVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTAR
VAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKT
LEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRL
RQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEVA
QGRWEVEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIE
EYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDI
RKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLIT
TTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSI
LVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPY
IYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAP
KLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPP
RPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESF
TGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIR
CARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQR
SILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNS
IAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLV
PTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENP
YESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRW
MRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5067..6710
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97281.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNVIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGTSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 6710..>7478
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97282.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGES"
ORIGIN
1 ggcgtctaac gacgctacca ctgcctttgg cagccaaaac tctgtcaatg acagtatcaa
61 caccgcccct tctaataaag aagaggttgg tgcattctcc aacatcaaag ttggatttaa
121 gaaaatgctg ggtgccgttc ccaaggggac caaagcaccc agtagtgatc agcactgccc
181 ctcagttaag atcgggacca agacattaac agttccccct gagcccccaa atggtgaaga
241 caccgtgcag tttgatgcga agtcggaaac tgtgcgcggg ctaccagact tgacaacggt
301 gcagaatgaa cacgaaaaca caccatacac tgtcccccca ttgagtgaaa gggagcatag
361 accagctact gaaccgcttc ctggcacaat actggagatg tgggatggtg aattctacca
421 ttactctttg tacgtcagcg gtggtaaagc cctaggggtt cacaagcccc ctgcagcgat
481 aagcctcgcg acgatagagc tcacacccat atctctttat tggaggcccg tttacacccc
541 caactatctg gtttgcccag acacgttgaa gggccttgct ggtgagaagt tcccctacac
601 ggccttcagc aacaactgtt acaacttctg ttgctgggtg cttgagctca atgacacgtg
661 gcttagcagg agaagcatca ccaggaccac cggcttcttc aaaccatacc agtcttggaa
721 taggaaaccc cttccaaccg ttgacgatgg aaagatcaag aaggtggcca acgcaattct
781 ctgtgcactt ggatcactgt tttcaaaacc aatcaaggac ctattgggca aacttaaacc
841 attgaacttg ctgcacttgc tcgcatcatg tgactggacg tttgcgggta tagtagagac
901 agtcatccta atggcggaac ttttcggcat cttttggaca ccgccagatg tttctagttt
961 catatcctcc ctgataggtg attttgaatt gcaagggcct gaggacctgg ctgtggagct
1021 tgtacccgtg gtcatgggcg gcataggaat ggttctcggc tttactgctg agaagatagg
1081 ccgcatgcta tcgtccgctg cgtcaacact acgggcgtgc aaagacttgg ggaattatgc
1141 tcttgacata ttgaaactgg ttgtgaagtg gttcttccca aagaaagaag agaaagccga
1201 gatggaaacc ctaagggcga ttgaggatgc cgtcctggac atggaagcta taggaaataa
1261 ccatctcaca accctcctca aggacaagga tagcctcgcg gctttcatga agactctaga
1321 cctagaagaa gagaaggcaa ggaagctgtc caccaaatca tcctcgccag acattgtcgg
1381 caccattaat gccatattgg ctaggatagc tgctgccagg tccctcttgc acaaggctaa
1441 agaagaaatg ttcagcagga tcagacccgt ggttgtcatg atctcgggta gacctggcat
1501 tggcaaaacc cacatggcaa gacacttggc taagagtatc gccaacacca tgagcggcga
1561 ccagagagtg gggctcgtcc cacgcaacgg ggttgatcat tgggacgcct acaggggaga
1621 gagggtggtt ttatgggatg attatggcat gggaaaccct gtcaaagatg ccctaacact
1681 gcaagagctg gccgacacct gcccagtaac tctaaactgt gataggattg agaacaaggg
1741 gaagatgttt gacagtgatg tcatcataat cacgaccaat ttagtcaacc cagcgcccct
1801 cgattatgta aacttcgagg cgtgctccag aaggatcgac tttctggtct atgcagagtc
1861 accagaaatt gagaaggtta agagagactt ccccggccaa cctgatatgt ggaaggacca
1921 ttttaagcct gacttttccc acataaaact gactctagcc ccacagggtg gatttgacaa
1981 gaatggcaac accccgcatg gtaagggcac catgcgatcc ctaacccagg ggtccctgac
2041 tgcaagggtt gcaggtcttg ttcatgagag gagagacgag tttcagctcc aggggaacga
2101 ccttcaaaca tataacttcg ataccaacag agtctctgca tttaggaagc tggccgcaga
2161 caacaagtat gggatcatgg agactatgag agtgggcaca gcgcttaaga gtgtcaagac
2221 cttggaagat ctgaaagttg cactgaggga tgtgaagttc aatgagtgtg agataattta
2281 cagaaactcc aaataccgag tctcttccaa tggtaaaggt tctgtctctg ttgacaaagt
2341 tgaggaccaa acatcccaga ccgcgaacga agtgggtgca gcactcctta gactcagaca
2401 ggcaagagcc agatactatg tcagctgctt ccaagacctc gtttacactc taatacaggt
2461 cgccggagca tcattcgttg tcaacaggat ctctaaaagg ttctgctggg agagatgggt
2521 caaaccaacc gagacccagg aaacgagtga atccgaaaag gaagtggccc aaggcagatg
2581 ggaggttgag cccaaggaca cagaaccaga aggtaagaag ggtaagaaca agaaaggaag
2641 aggcaagaaa cacacagctt tctccagtaa aggcctgagt gatgaggagt atgacgagtt
2701 caagagaatc agagaagaaa ggaacggaaa atactccatt gaggaatacc tgcaagaccg
2761 ggatcgctac tatgaggaag tggcagtcgc ccgggcgaca gaggaggact tctgtgaaga
2821 ggaggaggcc aagataagac agagaatctt tcgccccaca aagaagcaga ggaaggaaga
2881 aaggggggtg cttggtttgg ttactggctc agacatcagg aagagaagac cagacgattt
2941 tcaaccgaag ggcaacctgt gggcagacga caccaggagt gtggactaca acgagagact
3001 tgatttcgag gctcccccga gtgtctggtc aagaatagtc ccattgggca ctggctgggg
3061 cttctgggtc tcatcaaacc tcctgatcac aacaacgcac gtcctaccta aggggattaa
3121 tgaactcttt ggagttgaga tcaaacagat tcagattcat aagtctggag agttctgcag
3181 gttcagattc ccaagaccaa ttagaccaga tgtcacaggg ctcgtgttgg aggaaggcgc
3241 tccagaaggc actgtctgct ccatactcgt aaagagacct acaggtgaga tgatccccct
3301 ggcagtgagg atgggcacgc atgcatccat gaaaatacag ggcaggaccg tcggtggcca
3361 gatgggaatg ctcctcacag gggcaaatgc gaagaacatg gatcttggca ccggtcctgg
3421 tgactgcggt tgcccttaca tctacaaacg tggcaatgat atagttgtcg cgggtgtcca
3481 caccgcagca gctcggggag gcaacactgt tatatgtgcc actcaagggc aagatgggga
3541 agcagtcctt gagggaaatg agaaccttgg cacttactgc ggtgctccaa tcttgggtcc
3601 aggcaaggcg cccaaactta gtacgaagac caagttctgg cgttcatcac cagacgcttt
3661 gccgccaggc acttatgagc ctgcctactt gggaggtaag gaccctagag tggaaaaagg
3721 accatccctg cagcaagtca tgagggacca gctaaaacct ttcacagaac ccaggggcaa
3781 gccacctaga cctgcagtct tagaagaagc caaaaagaca gtgatgaatg ttctagagca
3841 aaccattgac cctgctaaac cgtggaccta ttcccaagca tgtgcctcac tggacaagac
3901 cacttccagt ggtagccccc atcatgtcag gaaaaatgac cattggaatg gggaatcctt
3961 cactggcccc cttgcagacc aagcatccaa agccaatctc atgtacgagc aggccaaaca
4021 tgtgcagccc gtgtacacgg ccgcacttaa agatgaacta gtcaaaactg ataagatcta
4081 caagaagata aagaagaggc tcttatgggg gtcggatctt ggtacaatga tcaggtgtgc
4141 cagggccttt ggcggtctca tggatagcat gaaggcaagc tgcatagccc tcccatgtag
4201 ggtaggaatg aacatgaatg aagatggccc catcatattt gacaagcatt ctaagtatag
4261 gtaccattat gatgctgact attccaggtg ggactcaacc cagcaaagga gcattctctc
4321 ggccgctatg gaagtgatgg tgcggttctc tgctgaacca gagctggcac aagtggttgc
4381 agaggacctc ctggcaccca gccaactaga tgttggcgat tttgtcatct cagtccagga
4441 gggtctgcca tcaggggtcc catgcacatc acaatggaat tcaatagcac actggatcct
4501 aaccttgagt gcaatggcag aagtgtcggg tctctcacca gatgttgttc aagcccactc
4561 ctgtttctca ttctacggtg atgatgagat cgtcagcact gacatcaacc ttgatcccat
4621 gaagttgaca cagaagctca gagagtatgg cctggtcccc acccgacctg acaaaactga
4681 gggtcccctc gtaataactg aagatctcac cggtctaacg ttcctgcgca ggtcaattgc
4741 acgggaccca gctgggtggt ttggaaaatt ggaccaagac tcaatcctca gacagttgta
4801 ctggacaagg ggccccaacc atgagaaccc atatgagagc atggtccctc attcccagcg
4861 ggccacacaa cttatggccc ttctcggtga ggcttcactg catggtcccc agttttacaa
4921 gaaagttagc aagatggtta tcaatgagat caaaagtggt ggtctggaat tctatgtgcc
4981 cagacaagag gccatgttca gatggatgag attctctgac ctcagcacat gggagggcga
5041 tcgcaatctt gctcccgagg gtgtgaatga agatggcgtc gaatgacgct gctccatcta
5101 atgatggtgc tgccaacctc gtaccagagg ccaccaatga ggttatggca cttgagccgg
5161 tggtgggagc ttcaatcgct gctcctgtcg tcggccaaca aaatgtaatt gacccctgga
5221 ttagagaaaa ttttgttcag gcaccacagg gtgagtttac tgtttcacca aggaactcac
5281 ctggcgagat gcttctaaat cttgaattag gccctgagct caacccttat ctgagtcact
5341 tgtcccgcat gtataacggc tatgctggtg gtatgcaggt tcaggtggtc ctagctggga
5401 atgcgttcac agctggtaaa atcatctttg ccgccgtccc accacatttc cctgttgaga
5461 atattagtgc agcccaaatc acaatgtgcc cccatgtaat tgttgatgta agacagcttg
5521 agccagtgct tttgcccctc cctgacataa ggaatagatt ctttcattat aatcaggaaa
5581 ataccccccg gatgagactt gtggctatgt tgtacacacc ccttagagca aattctggtg
5641 aggatgtgtt tacggtgtct tgcagagttc tgacccgccc tgcccccgac tttgagttca
5701 cgttcttggt gccaccaacc gtggagtcaa agactaagcc ctttacactc cctattctga
5761 ctcttgggga gctgtccaac tcaaggttcc ccgctccaat agacatgttg tacactgacc
5821 ccaatgaggc gattgtggtg caaccacaaa atggcaggtg cactctagat ggaacacttc
5881 aagggaccac ccaactggta cccacccaaa tttgctcctt caggggcacg ctaattagcc
5941 agacgtcgag gtctgcagat tcaacagatt cagctccacg ggtgaggaac caccctctcc
6001 atgttcagct gaagaacctc gatgggacac catatgaccc aacagatgag gtgccagcag
6061 ttttgggtgc catagatttc aaaggaactg tgtttggggt cgctagccaa agaaacacca
6121 cagggacctc tataggtgca acccgcgccc atgaagtgca catagacacc acaaacccta
6181 gatacacccc aaagcttggc tctgtgttga tgtattctga atctactgat tttgatgatg
6241 gacaacccac ccgctttacc cccattggca tgggagccga tgattggcac caatgggaat
6301 tgcccgaata ttctggtcac ctcactctta acatgaattt ggcccccgca gttgcccctg
6361 ctttccctgg tgagcgcatt ctcttcttca gatcagtggt gccgtctgct ggtggctatg
6421 gatcaggtca catagattgc ctcatcccac aggagtgggt tcagcatttc taccaggagg
6481 ccgctccatc acagtccgcg gtggctctta tcaggtatgt caaccctgac actggaagaa
6541 acatctttga ggcaaaactg catagagaag ggttcatcac tgtggcaaat tctggaaaca
6601 accccatagt tgtgccccca aatggttact tcaggtttga ggcctgggtc aatcaattct
6661 acacactcac ccccatggga actggacagg ggcgcagaag agttcaataa tggcaggagc
6721 tttcttagct ggattggcag gtgacgccat aacaagtggt gtcgggtccc taatcaatgc
6781 tggggccaat gcaattaacc aaaaggtaga atatgacttt aataaacagc tccaattggc
6841 atccttcaaa catgacaaag agatgttgca atcacaagta ctggccacta aacagctcca
6901 gcaggagatg atgaacataa ggcaaggggt cttgtccgct ggcggctttt cccctacaga
6961 cgccgcgaga ggtgctgtga acgcgccgat gacaaaaatt ttggattgga atggaacaag
7021 gtactttgcc ccaaacagta tgaagacaac cagttattcg ggccagtttt ccagcaaccc
7081 tgtgcatagg caacccactt taccccgttc tgaaccccca aaaattaagg ttaatagtga
7141 ttctgctagt gtgtatagtt ctgcatctac tgctccttca caatcaactc actcaacggc
7201 tttgactgcg gggtccagct catctaggac aacatcctct tctgcagtag cttccaccct
7261 atctaggact agtgactggg tgagaggaca aaatgaaagg cttagcccgt ttatggatgg
7321 tgctctccaa acaacttttg tcacaccacc atcgagcaaa gcttcatcat atgggtcggt
7381 ctcaaccgtt cccaaagctg ttttggactc ctggactcct atgttcaaca cccataggca
7441 gcctctcttc gctcatgtgc gcaggcgagg ggagtcac
//