Typing tool
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Typing tool
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Complete norovirus genomes
| LC597121 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS LC597121 7589 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2015/GII.6[P7]/STM37 RNA, comlete genome.
ACCESSION LC597121
VERSION LC597121.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7589)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7589
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2015/GII.6[P7]/STM37"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2015"
CDS 5..5098
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BCN97275.1"
/translation="MKMASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLAAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5079..6722
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97276.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 6722..7498
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97277.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKTKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cactgccttt ggcagccaaa actctgtcaa
61 tgacagtatc aataccgccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa
121 agttgggttt aagaaaatgc tgggtgccgt tcccaagggg accaaagcac ccagtagtga
181 tcagcactgc ccctcagtta agatcgggac caagacgtta acagtccccc ctgagccccc
241 aaatggtgaa gacaccgtgc agtttgatgc gaagtcggaa actgtgcgcg ggttaccaga
301 cttgacaacg gtgcagaatg aacacgaaaa cacaccatac actgtccccc cattgagtga
361 aagggagcat agaccagcta ctgaaccgct tcctggcaca atactggaga tgtgggatgg
421 tgaattctac cattactctg tgtacgtcag cggtggtaaa gccctagggg ttcacaagcc
481 ccctgcagcg ataagcctcg cgacgataga gctcacaccc atatctcttt attggaggcc
541 cgtttacacc cccaactatc tggtttgccc agacacgttg aagggccttg ctggtgagaa
601 gttcccctac acggccttca gtaacaactg ttacaatttc tgttgctggg tgcttgagct
661 caatgacacg tggcttagca ggagaagcat ctccaggacc accggcttct tcaaaccata
721 ccagtcttgg aataggaaac cccttccaac cgttgacgat ggaaagatca agaaggtggc
781 caatgcaatt ctctgtgcac ttggatcact gttttcaaaa ccaatcaagg acctattggg
841 caaacttaaa ccattgaact tgttgcactt gctcgcatca tgtgactgga cgtttgcggg
901 tatagtagag acagtcatcc taatggcgga acttttcggc atcttttgga caccgccaga
961 tgtttctagt ttcatagctt ccctgatagg tgattttgaa ttgcaagggc ctgaggacct
1021 ggctgtggag cttgtacccg tggtcatggg tggcatagga atggttctcg gctttactgc
1081 tgagaagata ggccgcatgc tatcgtccgc tgcgtcaaca ctaagggcgt gcaaagactt
1141 ggggaattat gctcttgaca tattgaaact ggttatgaag tggttcttcc caaagaaaga
1201 agagaaagcc gagatggaaa ccctaagggc gattgaggat gccgtcctgg acatggaagc
1261 tataggaaat aaccatctca cgaccctcct caaggacaag gatagcctcg cggctttcat
1321 gaagactcta gacctagaag aagagaaggc aaggaagctg tccaccaaat catcctcgcc
1381 agacattgtc ggcaccatta atgccatatt ggctaggata gctgctgcca ggtccctctt
1441 gcacaaggct aaagaagaaa tgttcagcag gatcagaccc gtggttgtca tgatctcggg
1501 tagacctggc attggcaaaa cccacatggc aagacacttg gctaagagta tcgccaacac
1561 catgagcggc gaccagagag tggggctcgt cccacgcaac ggggttgatc attgggacgc
1621 ctacagggga gagagggtgg ttttatggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgccctaaca ctgcaagagc tggccgacac ctgcccagta actctaaact gtgataggat
1741 tgagaacaag gggaagatgt ttgacagtga tgtcatcata atcacgacca atttagtcaa
1801 cccagcgccc ctcgattatg taaacttcga ggcgtgctcc agaaggatcg actttctggt
1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagac ttccccggcc aacctgatat
1921 gtggaaggac cattttaaac ctgacttttc ccacataaaa ctgactctag ccccacaggg
1981 tggatttgac aagaatggca acaccccgca tggtaagggc accatgcgat ccctaaccca
2041 ggggtccctg actgcaaggg ttgcaggcct tgttcatgag aggagagacg agtttcagct
2101 ccaggggaac gaccttcaaa catacaactt cgataccaac agagtctctg catttaggaa
2161 gctggccgca gacaacaagt atgggatcat ggagactatg agagtgggca cagcgcttaa
2221 gagtgtcaag accttggaag atctgaaagt tgcactgagg gatgtgaagt tcaatgagtg
2281 tgagataatt tacagaaact ccaaataccg agtctcttcc aatggtaaag gttctgtctc
2341 tgttgacaaa gttgaggacc aaacatccca gaccgcaaac gaagtgggtg cagcactcct
2401 tagactcaga caggcaagag ccagatacta tgtcagctgc ttccaagacc tcgtttacac
2461 tctaatacag gtcgccggag catcattcgt tgtcaacagg atctctaaaa ggttctgctg
2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccgaaa aggaagtggc
2581 ccaaggcaga tgggagattg agcccaagga cacagaacca gaaggtaaga agggtaagaa
2641 caagaaagga agaggcaaga aacacacagc tttctccagt aaaggcctga gtgatgagga
2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggaata
2761 cctgcaagac cgggatcgct actatgagga agtggcagtt gcccgggcga cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag acagagaatc tttcgcccca caaagaagca
2881 gaggaaggaa gaaagggggg tgcttggttt ggttactggc tcagacatca ggaagagaag
2941 accagacgat tttcaaccga agggtaacct gtgggcagac gacaccagga gtgtggacta
3001 caacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg
3061 cactggctgg ggcttctggg tctcatcaaa cctcctgatc acaacaacgc acgtcctacc
3121 taaggggatt aatgaactct ttggagttga gatcaaacag attcagattc ataagtctgg
3181 agagttctgc aggttcagat tcccaagacc aattagacca gatgtcacag ggctcgtatt
3241 ggaggaaggc gctccagaag gcactgtctg ctccatactc gtaaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac gcatgcatcc atgaaaatac agggcaggac
3361 cgtcggtggc cagatgggaa tgctccttac aggggcaaat gcgaagaaca tggatcttgg
3421 caccggtcct ggtgactgcg gttgccctta catctataaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatatgtg ccactcaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgagaacctt ggcacttact gcggtgctcc
3601 aatcttgggt ccaggcaagg cgcccaaact tagcacgaag accaagttct ggcgttcatc
3661 accagacgct ttgccgccag gcacttatga gcctgcctac ttgggaggta aggaccctag
3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga
3781 acccaggggc aagccaccta gacctgcagt cttagaagaa gccaaaaaga cagtgatgaa
3841 tgttctagag caaaccattg accctgctaa accgtggacc tattcccaag catgtgcctc
3901 actggacaag accacttcca gtggtagccc ccatcatgtc aggaagaatg accattggaa
3961 tggggaatcc ttcactggcc ccctcgcaga ccaagcatcc aaagccaatc tcatgtacga
4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgaac tagtcaaaac
4081 tgataagatc tacaagaaga taaagaaaag gctcttatgg gggtcggatc tcggtacaat
4141 gatcaggtgt gccagggcct ttggcggtct catggatagc atgaaggcaa gctgcatagc
4201 cctcccatgt agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaagca
4261 ttctaagtat aggtaccatt atgatgctga ctattccagg tgggactcaa cccagcaaag
4321 gagcattctc tcggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc
4381 acaagtggtt gcagaggacc tcctggcacc cagccaacta gatgttggcg attttgtcat
4441 ctcagtccag gagggtctac catcaggggt cccatgcaca tcacaatgga attcaatagc
4501 acactggatc ctaaccttga gtgcaatggc agaagtatcg ggtctctcac cagatgttgt
4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa
4621 ccttgatccc atgaagttga cacagaagct cagagagtat ggcctggtcc ccacccgacc
4681 tgacaaaact gagggtcccc tcgtaataac tgaagatctc accggtctaa cgttcctgcg
4741 caggtcaatt gcacgggacc cagctgggtg gtttggaaaa ttggaccaag actcaatcct
4801 cagacagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc
4861 tcattctcag cgggccacac aacttatggc ccttctcggt gaggcttcac tgcatggtcc
4921 ccagttttac aagaaagtta gcaagatggt tatcaatgag atcaaaagtg gtggtctgga
4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg
5161 cacttgagcc ggtggtggga gcttcaatcg ctgctcctgt cgtcggccaa caaaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caaggaactc acctggcgag atgcttctaa atcttgaatt aggccctgag ctcaaccctt
5341 atctgagtca cttgtcccgc atgtataacg gctatgctgg tggtatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt
5461 tccctgttga gaacattagt gcagcccaaa tcacaatgtg cccccatgta attgttgatg
5521 taagacagct tgagccagtg cttttgcctc tccctgacat aaggaataga ttctttcatt
5581 ataatcagga aaataccccc cggatgagac ttgtggctat gttgtacaca ccccttagag
5641 caaattctgg tgaggatgtg tttacggtgt cttgcagagt tctgacccgc cctgcccctg
5701 actttgagtt cacgttcttg gtgccaccaa ccgtggagtc aaagactaag ccctttacac
5761 tccctattct gactcttggg gagctgtcca actcaagatt ccccgctcca atagacatgt
5821 tgtacactga ccccaatgag gcgattgtgg tgcaaccaca aaatggcagg tgcactctag
5881 atggaacact tcaggggacc acccaactgg tgcccaccca aatttgctcc ttcaggggca
5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga
6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgac ccaacagatg
6061 aggtgccagc agttttgggt gccatagatt tcaaaggaac tgtatttggg gtcgctagcc
6121 aaagaaacac tacagggaac tctataggcg caacccgcgc ccatgaagtg cacatagaca
6181 ctacaaaccc cagatacacc ccaaagcttg gctctgtgtt gatgtattct gaatctactg
6241 attttgatga tggacaaccc acccgcttta cccccattgg catgggagcc gatgattggc
6301 accagtggga attgcccgaa tattctggtc acctcactct taacatgaat ttggcccccg
6361 cagttgcccc tgctttccct ggtgagcgca ttctcttctt cagatcagtg gtgccgtctg
6421 ctggtggcta tggatcaggt cacatagatt gcctcatccc acaggagtgg gttcagcatt
6481 tctaccagga ggccgctcca tcacagtccg cggtggctct tatcaggtat gtcaaccctg
6541 acaccggaag aaacatcttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttt gaggcctggg
6661 tcaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcaga agagttcaat
6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaagtg gtgtcgggtc
6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggta gaatatgact ttaataaaca
6841 gctccaattg gcatccttca aacatgacaa agagatgttg caatcacaag tactggccac
6901 taaacagctc cagcaggaga tgatgaacat aaggcaaggg gtcttgtccg ctggcggctt
6961 ttcccctaca gacgccgcga gaggtgctgt gaacgcgccg atgacaaaaa ttttggattg
7021 gaatggaaca aggtactttg ctccaaatag tatgaagaca accagttatt cgggccagtt
7081 ttccagcaac cctgtgcata ggcaacccac tttaccccgt tctgaacccc caaaaactaa
7141 ggtcaatagt gattctgcta gtgtgtatag ttctgcatct actgctcctt cacaatcaac
7201 tcactcaacg gctttgactg cggggtctag ctcatctagg acaacatcct cttctgcagt
7261 agcttccacc ctatctagga ctagtgactg ggtaagagga caaaatgaaa ggcttagccc
7321 gtttatggat ggtgctctcc aaacaacttt tgtcacacca ccatcgagca aagcttcatc
7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgttcaa
7441 tacccatagg cagcctctct tcgctcatgt gcgcaggcga ggggagtcac agatttagtg
7501 aaaagattga ttaggttttc tttctttctt cttttccttt tctttctttt aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//