Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC597120 | GII.1 | |
|
|---|---|---|---|
| GII.P33 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7459
LOCUS LC597120 7588 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2015/GII.6[P33]/STM10 RNA, comlete genome.
ACCESSION LC597120
VERSION LC597120.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7588)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7588
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2015/GII.6[P33]/STM10"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2015"
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BCN97272.1"
/translation="MASNDASAAAAATSNNDIAKSSSDGVLSSMAVTFKRALGARPKQ
PPPRETTQKQKPPRPPTPELIKKIPPSPPNGEDDIVVSYSAKGGVSGLPELSTVRQPG
ETNTAFSVPPLNQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELATLSLYWRPVYTPQYLISPGTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIVKWFFP
KKDETNELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARDL
AKKVAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEK
AKRDFPGQPDMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLVARA
SGLLHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLIDTMRVGSQLKNVKTV
SELKQALKNISIRRCQIVYGGLTYSLESDGKGNVRVDKVQSSAVQTNNELTGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKDGC
PKPKDEEEFVISSEDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNEHW
NGESFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDTIQANSLFSFYGDDEIVSTDIRLDPERLTVKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6692
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97273.1"
/translation="MKMASNDVAPSNDGAAGLVPEVSNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTSFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEESDLDLNQPTRFTPVGLYDT
NHFDQWILPNYSGRLTLNMNLAPSVAPLFPGEQILFFRSHMPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6692..7459
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97274.1"
/translation="MAGAFVAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALKQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTAFSGGFTSSPNTRTIDLPRKTSTTPAPTPVSRPSSSASTVSTRSTI
VSGTSGLSSSTRSSSQPTSSSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSRASSN
GTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 gaagatggcg tctaacgacg cttccgctgc cgctgctgct accagcaaca acgacatcgc
61 aaagtcttca agtgacggag tactaagtag tatggctgtc acttttaaac gagccctcgg
121 ggcccggcct aaacagccgc ccccgaggga aacaacacaa aaacaaaaac ctccacggcc
181 gcccaccccg gagttaatta aaaagattcc accctccccg cccaacgggg aggacgatat
241 agtggtgtcc tacagtgcca aaggtggtgt ctccggtctg cctgaactat ccaccgtcag
301 gcagccgggt gagacaaaca cagcatttag tgtcccccca ctcaaccaga gggaaaacag
361 ggacgctaaa gaaccgctgc ctggcaccat cctggagatg tgggacggag agatttacca
421 ctacggcttg tacgtggagc ggggcttggt gcttggggtg cacaaaccac cagcggctat
481 tagtcttgca aaggttgaac tagcaacact gtctctgtac tggagaccag tgtacacccc
541 tcagtacctc atatccccgg gaactctaag aaaactacat ggagagacat tcccttacac
601 ggcctttgac aacaactgtt acgccttctg ttgttgggtc ttggatctaa atgactcttg
661 gctcagcagg aggatgatac agagaacaac tggcttcttc agaccctacc aggactggaa
721 caggaaacct ctccccacta tggacgattc caaattgaag aaggtggcta atatagtcct
781 gtgtgctttg tcatcattat tcaccaggcc cattaaggac ataataggaa aactaaggcc
841 cttgaacata ctcaacatac tagcttcctg cgactggact ttcgcaggaa tagtggaatc
901 cctaattctc cttgcagaac tcttcggggt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttgctaggcg actacgaact acagggacct gaagatctcg ctgtggaact
1021 cgtaccagta gtaatggggg ggataggttt ggttctaggt ttcaccaagg agaagattgg
1081 caagatgcta tcatctgccg cgtccaccct cagagcttgt aaagaccttg gagcatatgg
1141 actggaaatt ctgaagttga tcgtgaagtg gttcttcccg aagaaagacg agacaaatga
1201 gcttgcaatt gtgagatcca ttgaggacgc agtgctagac ctcgaagcaa tcgaaaacaa
1261 tcacatgacc accctgctca aagacaaaga cagcttagca acctacatga agaccctgga
1321 tcttgaggag gagaaagcta ggaaactctc caccaaatcc gcttctcctg acattgtggg
1381 cacaatcaat tcacttctgg cacggattgc agccgcccgt tccttggtgc atcgggcaaa
1441 agaagagctt tccagtaggc caagacccgt tgttgtcatg atatcaggaa agccagggat
1501 agggaagacc caccttgcca gagatttggc aaagaaagtt gcggccaccc tcacaggaga
1561 ccagagggtg ggcctcatcc cacggaatgg tgtcgaccat tgggatgcat acaaaggtga
1621 gagagtcgtc ctttgggatg actatggaat gagtaacccc attcatgacg cccttaggct
1681 acaagaactt gctgacactt gccccctaac attaaactgt gatagaattg agaacaaagg
1741 gaaggtcttt gacagcgatg ccataattat cacaactaac ctggctaacc cggcaccatt
1801 ggactatgtc aattttgaag catgttcgag gcgcatcgac ttcctagtgt atgctgatgc
1861 ccccgacgtt gaaaaggcaa aacgcgactt cccagggcaa cctgacatgt ggaaggatgc
1921 ttttagacct gacttctcac acataaagct gatgttggct cctcagggtg gttttgataa
1981 gaacggcaac accccacatg gaaaaggtgt catgaaaacc ctcacatctg gctccctcgt
2041 tgcccgtgct tcaggactcc tccacgaaag actggacgag tacgagttac aagggccaac
2101 acccacaacc ttcaatttcg accaaaacaa ggtgttcgcc tttaggcagc tcgccgctga
2161 aaataaatac gggctgatag acaccatgag agtgggaagc cagctcaaaa atgtcaaaac
2221 tgtgtcagag ctcaaacagg cactcaagaa tatttcaatt agaaggtgcc agatagtcta
2281 tggtggtctc acatactcac ttgaatctga tggcaaaggt aatgtgaggg ttgataaggt
2341 gcaaagttca gctgtgcaga ccaacaatga gctaactggc gcactacacc atctgagatg
2401 cgctaggatt agatattatg ttaagtgtgt ccaagaagcc ttgtattcca tcatccaaat
2461 tgctggagcc gcgtttgtca ccacgcgcat tgcaaagcgc atgaacatac aaaacctctg
2521 gtccagacca caggtggagg atgaggaaga gaccaccagc aaagacgggt gcccaaaacc
2581 aaaggatgag gaagagtttg tcatctcgtc cgaagacatc aagcctgaag gcaagaaggg
2641 aaagaacaag tctggccgtg gcaagaaaca cacagccttc tcgagtaagg gtcttagtga
2701 tgaggagtac gatgagtaca agagaatcag agaagaaagg aatggcaagt actccataga
2761 agaatacctc caagacagag acaagtacta tgaggaggtt gctatagcca gggctactga
2821 agaggacttc tgtgaggaag aagaagccaa gattcggcag aggattttca gaccaacaag
2881 gaaacaacgc aaggaagaga gggtttcact cggactggtt acaggctcag aaatcaggaa
2941 aaggaacccg gatgacttca aacccaaagg aaagttgtgg gctgatgacg acaggagtgt
3001 cgattacaat gaaaagctca gctttgaagc ccccccaagc atctggtcga gaatagtcaa
3061 ctttggatca ggttggggct tctgggtctc accaagtctc tttataacat ccacccatgt
3121 catacctcaa ggggcacaag agtttttcgg tgtttccatc aaacagatcc aaattcataa
3181 atcaggtgag ttctgccgac taagattccc gaagccaatt aggactgatg tgacaggtat
3241 gatcctggag gagggggccc ctgaaggcac tgtggccaca ctgctcataa agaggccaac
3301 tggagagctg atgccactgg cagctagaat gggcacccat gcaactatga agatccaagg
3361 tcgtactgtc ggaggacaga tggggatgct cctgacaggg tccaacgcca agagcatgga
3421 cttgggtact acaccaggtg actgtggatg cccatatatc tacaaaagag gaaacgacta
3481 cgtggtcatc ggagtccaca cagctgccgc ccgcggaggg aacactgtca tctgtgcaac
3541 tcaaggaagt gagggcgagg ccgtacttga aggtggtgac aacaaaggca cctattgtgg
3601 cgccccaatc ctaggtccag gaaacgcccc caaactcagt actaaaacca aattctggag
3661 gtcctcaaca acaccactcc cacctggtac atatgaacca gcttacctcg ggggcaaaga
3721 ccccagggta aaaggtggcc cctcactaca gcaagttatg agagaccaac tgaaaccctt
3781 cacagaaccc agaggtaagc caccaaaacc cagtgtgttg gaagcagcca aaaagacaat
3841 cattaatgtc cttgagcaaa caatagaccc accccaaaaa tggacgttcg cacaggcgtg
3901 cgcatccctt gataaaacaa cctctagtgg ttacccgcac cacgtgcgga agaatgaaca
3961 ctggaatggg gagtccttca caggaaaatt ggctgatcag gcttcaaaag ctaacttgat
4021 gtttgaggaa ggaaaacaca tgacaccagt ctacacagga gctctcaaag atgagttagt
4081 caaaactgac aaaatatatg gtaagatcaa gaaaaggtta ttatggggtt cagatctggc
4141 aactatgatc cgttgcgcgc gagcgttcgg agggttgatg gatgaactca aggcccactg
4201 tgttacactc cccatcaggg tagggatgaa catgaatgag gatggtccca tcatttttga
4261 aaaacactct aggtacacct accattatga tgcagattac tctcgatggg actcaacaca
4321 acagagagct gttttagctg cagccctgga aatcatggta aaattttccc cagaaccaca
4381 cctagctcag attgtcgcag aagatctcct atctcccagc gtgatggacg tgggcgattt
4441 taaaatatca atcactgaag ggctcccctc tggggtgcct tgcacttcac aatggaattc
4501 cattgctcat tggctcctca cgctctgtgc actctctgag gtaacagatt tatctcctga
4561 caccatccaa gcaaactcac tcttctcttt ttatggtgat gatgaaattg tgagcacaga
4621 cattagatta gatccagaaa ggctaacagt caaactaaaa gagtatggtc tcaagccaac
4681 ccgccctgac aagactgaag ggcctctggt catttctgag gacttagatg gtctgacctt
4741 cttgcggaga actgtgaccc gtgacccagc aggttggttt ggaaaattgg aacaaagctc
4801 aatacttaga cagatgtatt ggaccagggg ccccaatcat gaggatccct ctgaaacaat
4861 gataccacac tcccaacgac ccatacagtt gatgtcccta ctaggtgaag ctgcgctgca
4921 tggcccaacg ttctacagca aaatcagtaa attggtcata tcagagttga aagaaggtgg
4981 catggacttt tacgtgccaa ggcaagaacc aatgttccga tggatgaggt tctcagacct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgtcgc tccatctaat gatggtgcag ccggtctcgt accagaggtc agcaacgaga
5161 cgatggcact tgagccggtg gctggggcct ccatagctgc ccctttaacc ggccaaaata
5221 atgtgataga cccctggatt agaatgaatt ttgtccaagc tccaaatggt gaatttacag
5281 tgtccccccg taattcccca ggtgaagtgt tgttaaattt ggaattaggc cctgaattaa
5341 atccattctt ggcacacctt gcaagaatgt acaatggtta tgctggtggg gttgaagtgc
5401 aggtgctact tgctgggaat gcgttcacgg caggaaaact agtgtttgca gcaatccccc
5461 cacacttccc tcttgagaat ctgagtcctg gtcaaattac tatgtttcct catgtaatca
5521 ttgatgttag aactttagaa cctgttctct tgcctttacc agatgttaga aataacttct
5581 ttcattataa tcagcaacct gagccccgta tgagacttgt ggctatgttg tacacccctc
5641 ttagatctaa tggttctggt gatgatgtgt tcacagtctc ttgtagggtc ctcactcgcc
5701 cctctccaga ctttgatttt aattatttgg tccccccaac tgtggaatct aaaactaaac
5761 cattcaccct gccaatattg accatcggag aattgtcaaa ttctaggttc ccagtaccaa
5821 tagatgaatt gtacaccagc cccaatgaag gagtggttgt gcaacctcaa aatggcagat
5881 caacacttga tggtgaactg cttggcacca cacaacttgt accatcaaac atctgtgcct
5941 tgcgagggcg catcaacgcc caagtgccag acgatcacca tcaatggaac ttacaggtta
6001 caaatgcaaa tgggacttca tttgacccca ctgaagatgt ccctgcacca ttgggcacgc
6061 cggatttcct ggcaaacatc tacggagtca ctagtcagag gaaccctgac aacacttgcc
6121 gtgctcatga tggggttttg gcaacctgga gccctaaatt tacacccaag ttaggatctg
6181 tggttttggg tacttgggaa gaaagtgatc ttgatctcaa tcagcccacc agatttacac
6241 ctgttggttt gtatgacaca aaccactttg atcagtggat tctacccaat tactctggaa
6301 gattgacctt aaacatgaat ttggcaccct ccgttgcccc cctattccca ggtgaacaaa
6361 tacttttctt taggtcccac atgccactta aaggaggcac ttccaatggt gccattgact
6421 gtctgctccc tcaggagtgg attcagcatt tctatcagga atcagccccg tcacccacag
6481 atgttgctct gattaggtac accaaccctg acacgggccg tgtcctattt gaggctaaat
6541 tacatagaca ggggtttatc acagtagcaa attctggttc tagacctatt gttgttcctc
6601 ctaatggtta ttttaggttt gattcttggg ttaatcagtt ttactctctc gcccccatgg
6661 gaactgggaa tgggcgtaga agggtgcagt aatggctgga gcttttgtag cagggcttgc
6721 cggtgatata gtcaccaatg gcattggttc acttgtgaac gctggagcca atgcaataaa
6781 ccaaaaagta gattttgaaa acaacaagca actacagcag gcttctttca accatgacaa
6841 ggaaatgttg caagctcaaa ttcaggccac aaaacaatta caggctgaca tgattgcgct
6901 caaacaaggg gtattgaccg caggcggctt ctcccctact gatgcagcaa gaggggcagt
6961 taatgcgccc atgacgcaag tcttggactg gaatgggact aggtactggg cccccggagc
7021 cacgaaaaca actgctttct ccggcgggtt cacaagctct cccaatacca ggactattga
7081 tttgcctagg aaaacatcaa ccacaccagc ccccacgcct gtgtctagac ctagttcttc
7141 tgcttctact gtttctaccc gctcaacaat tgttagcggg acttctggcc tttcttcttc
7201 gactaggagc tcttcccaac ccacctcctc ttcttctcgg actagcgaat gggtgcgtag
7261 tcaaaacagg gcgctggagc cctacatgag gggagcgtta caaactgctt acgtgacgcc
7321 cccctctagt agagcttcca gcaatggcac ggtctcaacc gtgccaaaag aagttttgga
7381 ctcctggaca tctgtgttca atacccacag acaaccgctt ttcgctcatc tccgtcggag
7441 aggggagtca caggtttagt gaaaagatga ttctttcttc tattcttttt gaaatttcta
7501 tcttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//