Typing tool
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Typing tool
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Complete norovirus genomes
| LC597117 | GII.3 | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6719
ORF3: 6719..7483
LOCUS LC597117 7525 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2017/GII.13[P16]/SOEP249 RNA, comlete
genome.
ACCESSION LC597117
VERSION LC597117.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7525)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2017/GII.13[P16]/SOEP249"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2017"
CDS <1..5092
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BCN97264.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDKPQNPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAIIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEASELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVNNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
PEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDVKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5073..6719
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97265.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPTDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADAATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESDDFDQNQP
TKFTPVGIGVDNEADFQQWTLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6719..7483
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97266.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGAGAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWSG
TRYWAPNATSTTSMSGGFTGQAVHRAIPNFKTNQAPKSTPSSGSSVRSSSTQLTNLSS
HSSGSSRSSGSTMVSSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSLD
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 ggcgtctaac gacgctaccg ttgccgttgc ttgcaacaac aacaacgaca aggaaaaatc
61 ttcaggtgaa ggcttattca caaatatgtc ttctacctta aagaaagccc tcggggctag
121 gcccaaacag cctgccccga gagacaaacc acaaaatccc ccaagaccac caactcccga
181 gttggtcaag aggatacccc ctcctccacc taatggcgaa gaagaagagg aaccagtcat
241 taggtatgag gttaagagtg ggatctctgg cctgcccgag ctcacaacag tcccccaacc
301 ggacgtggcc aacacagcat tcagtgttcc accactgagc ttgagagaaa acagggaggc
361 caaggaaccg ctaacagggg caatattaga gatgtgggat ggagagatat accactatgg
421 cctgtacgtg gagaaaggct tagtgttggg tgtgcacaaa ccacctgcag ccataagcat
481 ggcaagagtg gagctgacgc cgctgtcatt gtactggcgt gtggtgtaca ctccccaata
541 cctcatctcc cctgaaactc tcaggaggct caacggagag gcattccctt acaccgcctt
601 tgacaacaac tgctatgcct tttgctgctg ggtgttagac ctcaatgact catggcttag
661 caggaggatg gtgcaaagaa caacgggctt ctttagacct taccaagagt ggaacagaaa
721 acccctgcct accatggatg actccaaaat taagaaggta gcaaatatat tcctatgttc
781 attgtccaca ttattcacca gacccataaa agacctcata gggaaaatta aaccattaaa
841 catattgaat atcctggcaa cgtgtgactg gacgtttgcc ggaatagtgg agtctctgat
901 attacttgct gaactcttcg gagttttctg gacaccccca gatgtgtctg ctataatcgc
961 tcccttactc ggggactacg agttgcaagg gccagaagac cttgccgttg aactcgtacc
1021 tgtggtaatg ggagggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat
1081 gttatcctca gcagcatcaa cactcagagc ttgcaaagat cttggtgcct atggcttaga
1141 gatactcaaa ttggtcatga agtggttctt cccaaagaaa gaggaggcca gtgagctagc
1201 catggtgagg gccatagagg atgctgtact agatcttgag gcaatagaga ataaccacat
1261 gacaaccctg ttgaaagaca aagacagctt agcaacatac atgaaaacac tggatatgga
1321 ggaggagaaa gccagaaagt tgtccacaaa atctgcatcc cctgacatag ttgggacaat
1381 caacgccctg ctggcccgaa tagcagcggc caggtcacta gtccacaggg ccaaggaaga
1441 actatctagc aggataagac cagtagttgt tatgatatct ggcaaaccag gaataggcaa
1501 aactcatctg gccagggagg tggcaagaaa ggtggcatcc actctcactg gggaccaaag
1561 agttggactc ataccaagaa acggcgtgga ccattgggat gcatacaaag gtgagagagt
1621 cgtgctgtgg gacgactatg gcatgagtaa ccccattcat gatgctcttc gcatacaaga
1681 gttggctgat acgtgtcccc tcaccttaaa ttgtgacaga attgaaaata aaggaaaagt
1741 ttttgacagt gaagtcataa taatcacaac aaaccttgcc aatccagccc cacttgacta
1801 tgtcaacttt gaggcctgtt ccagaagaat tgatttcctg gtgtacgctg aggcaccaga
1861 agtagaaaag gcaaaacggg actttcctgg tcagccagat atgtggaagg acgccttcaa
1921 gccggacttt tcacacatca agctacagct tgcacctcag ggcggctttg acaagaatgg
1981 caacacccca catgggaaag gagtgatgaa gaccctcact accggttctc tgattgcccg
2041 tgcatcaggc ctactgcacg agaggatgga tgaatttgaa ctccaaggtc ctacaatcac
2101 caccttcaat ttcgaccgga acagaatcac agcattcaga caattggctg cagaaaacaa
2161 gtatggattg gtggatacca tgaaagttgg caatcaatta aaaggagtga aaaccatgga
2221 agaactcaaa caagcaatca ggaatgtgac catcaagagg tgccggatca tctacggtgg
2281 ctccacatat gaccttgaat ctgatggcaa gggcaaagtt ttggtggaaa aggtcaataa
2341 cacctctgta cagaccaaca acgagttggc cggggccctg caccatctca aacacgcccg
2401 aatcaggtac tatgtcaaat gtgtgcaaga agcagtctat tctatcatac aaattgctgg
2461 cgctgcgttt gtcaccacgc gcattgcacg ccgcatgaac atacaagaac tctggtcgaa
2521 gccacaatta gatcaaaatg aatcagagac taaggaagag gctcccaagc cagaagatga
2581 cgagttcgtc atatcttcta aggacatcaa ggaggaagga aagaagggca aaaacaaaac
2641 tggccgtggc aagaaacaca ctgcattctc cagcaagggc ttgagcgatg aggagtatga
2701 cgagtacaag aggataagag aagagagaaa tgggaagtac tctatagagg agtatcttca
2761 agacagagac aggtactatg aggagctcgc cattgccaaa gccacggagg aagacttctg
2821 tgaagaggag gagatcaaaa tccgtcagag aattttccgt cccaccagga aacaaagaaa
2881 ggaagagagg gcaacattgg ggttagtaac aggttcagaa atcagaaaaa gaaaccctga
2941 tgacttcaaa cccaaaggga agctgtgggc cgatgacaac agaagtgttg actacaatga
3001 gaaactggac tttgaggccc ccccaagcat atggtctagg attgtgagct ttggttctgg
3061 ctggggcttc tgggtatcac caagcctgtt cataacatca actcatgtaa ttcccgcagg
3121 cataacagaa gcatttggag ttcccatcaa acaaattcag attcacaaat caggtgaatt
3181 ttgccgattc agattcccaa aaccaattag accagatgtg acaggaatga tcttggaaga
3241 aggtgcgcct gagggcaccg tggcaactgt gctcatcaaa cgccccaccg gagagctcat
3301 gcctcttgca gccagaatgg gaacacacgc aaccatgaaa attcaaggcc gcatggttgg
3361 cggacaaatg ggcatgttgc tcactggatc aaatgctaaa ggaatggatt tgggaacaac
3421 tcctggtgac tgtggctgtc cttacatcta taaaaggggc aatgactata tagtcattgg
3481 ggtgcacact gcagcagccc gtggtggaaa caccgtcatc tgtgccacac agggaagtga
3541 gggtgaggca actcttgagg gtggagatga caaaggaaca tactgtgggg cacccattct
3601 aggccctggg ggtgcaccaa aattgagcac caaaaccaaa ttttggaggt catcaaacac
3661 gccccttcca ccagggacat atgagcctgc ctacctcggc ggccgtgatc cgcgtgttaa
3721 gggtgggccc tccttgcagc aggtaatgag agatcagttg aagccattca ctgaacccag
3781 gggcaaacct ccaagaccaa gtgtattgga agcagccaaa caaaccatca tcaatgtcct
3841 cgaacaaacc ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cctcacttga
3901 caaaaccacc tccagcgggc acccccatca cgcccgaaag aatgaattct ggaatggtga
3961 gaccttcact ggcaaattgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg
4021 gaaacacatg acaccagtgt atacagcagc actcaaggac gagctagtca agactgagaa
4081 aatctatgga aagatcaaga agagactgct ctggggctct gacttgtcca ccatgatccg
4141 gtgcgctagg tcatttggtg ggctcatgga cgagatgaag gcacactgca tatcactccc
4201 agtccgagtt ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag
4261 atacaaatat cactatgatg cagactactc tcgttgggat tcaacacaac agagggcagt
4321 actggcagca gccttagaaa tcatggtcag attctctgca gaaccacaat tggcacaaat
4381 agtcgctgag gatctgctgg cccctagtgt agtagatgta ggagacttta aaatcacaat
4441 aaatgaaggg ctcccctctg gtgtgccatg cacttctcaa tggaactcca tcgcacactg
4501 gctgctaact ctctgtgcct tgtctgaagt caccaaactg tcccctgaca ttatacaggc
4561 aaattccatg ttctcatttt acggtgatga cgagattgtc agcaccgacg taaaattgga
4621 ccctgaacag ttaaccgcca aattgaagga gtacggcctg aaaccaaccc gcccagacaa
4681 aaccgagggg cccctgatca tcagtgaaga tttgaacgga ctcactttcc tccgaaggac
4741 ggtgactcgt gacccagctg gctggtttgg aaaactggac caaagctcaa ttttgaggca
4801 gatgtactgg actagaggac caaatcatga agaccccaat gagacaatga taccccattc
4861 tcaaagaccc atacagctca tggcactgct tggtgaagcc tctcttcacg gaccttcttt
4921 ctacagtaaa attagtaaat tggtcataac tgaactcaaa gaaggtggga tggactttta
4981 cgtgccaagg caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgaat gacgctgctc
5101 catctaatga tggtgccgcc ggcctcgtac cagagatcaa caatgaggca atggcgctag
5161 atccagtggc gggtgcagcg atagcagcac cccttactgg ccagcaaaac ataatagatc
5221 cctggattat gaataacttt gtgcaagcac ctggtggtga atttacagtg tcacctagga
5281 actcccctgg tgaagtgctt ctaaatttag aattaggccc agaaataaat ccctatctgg
5341 ctcaccttgc taggatgtac aatggttatg caggtgggtt tgaggtgcag gtggtcctgg
5401 ctggaaatgc gtttacagcg gggaaagtga tctttgcagc tatacccccc aatttcccaa
5461 ctgacaattt gagtgcagca caaattacaa tgtgtcccca tgtgattgtg gatgtcaggc
5521 agctagagcc aatcaacctc ccgatgcctg atgtccgcaa caatttcttc cattacaatc
5581 aaggttctga ttcgaggttg cgcttaattg caatgctgta tacacccctt agggcaaata
5641 attctggaga tgatgttttc actgtgtcat gtagggtgtt gactaggccc agccctgatt
5701 tctcattcaa tttcctcgtc ccgcccactg tggaatcaaa gacaaaactt ttcaccctcc
5761 ctatcttgac tatctctgag atgtctaatt ctagatttcc agtgccaatt gactctttgc
5821 ataccagtcc aactgacaac attgttgtcc agtgccaaaa cgggcgcgtc acccttgacg
5881 gtgagctaat gggcaccacc cagctcttgc cgagtcagat atgtgctttt aggggtgtgc
5941 tcaccagatc aacaagcagg gccagtgacc aagctgacgc agcaaccccc agactcttca
6001 actactactg gcatatacag ctagacaacc taaatgggac cccgtatgat cctgcagagg
6061 atataccagc tcctcttggg acgccagact ttcggggtaa agtctttggc gtggccagcc
6121 agagaaaccc tgacagtaca acaagggcac atgaggcaaa agtggacaca acatctggcc
6181 gcttcacccc aaaattgggc tccctagaaa tatccactga atctgatgat tttgatcaaa
6241 accaaccaac gaaattcacc ccagttggca ttggagttga taatgaggca gactttcaac
6301 aatggacctt acctgactat tctggtcagt tcactcacaa catgaatctg gccccagctg
6361 tcgcccccaa ttttcctggc gaacagcttc ttttcttccg ctcacagttg ccatcctctg
6421 gtgggcggtc caatggtatc ctagactgcc tggtccccca ggaatgggtt cagcatttct
6481 atcaggaatc cgcccctgcc caaacgcagg tggctctggt caggtatgtc aatcctgaca
6541 ctggtagggt gttgtttgag gctaagctgc ataagctggg ctacatgacc atagctaaga
6601 gtggtgattc tccaataact gtgcccccaa atggatactt taggtttgaa tcttgggtga
6661 atccctttta cacactagcc cccatgggaa ctgggaacgg gcgtagaagg attcaataat
6721 ggctggagcc tttatagcag gattggctgg tgacatgctc acaaatactg tagggtcttt
6781 ggttaatgca ggggctggtg ctattaatca aaaagttgat tttgaaaata ataaatattt
6841 acagaatgca tcctttaatc atgataagga gatgttaaat gcacaaattg aggcaacaaa
6901 gaggctgcaa gctgacatga ttgctatcaa acagggggct ttgaccgctg gcggcttctc
6961 ccccactgat gcagcccgcg gggctattaa cgcccccatg acaaaagttc tggattggag
7021 tgggaccagg tactgggcac caaatgccac ctccacaact tcaatgtcag gtggtttcac
7081 aggacaagct gtgcacagag ctataccaaa ctttaaaacc aaccaagccc caaaatccac
7141 acctagcagt gggtcttcag tgaggtcaag ctcaacccaa ctcactaact tgagctcaca
7201 ctcatctggg tcttctcgat ccagcggatc cacgatggtc agctcgttgc catcttccag
7261 taggactaga gactgggtta accaacagaa ctttaatttg gaaccacaca tgcctggatc
7321 tctcaggaca gcttttgtta ctccaccatc tagcacagcc tctagcttgg acacagtctc
7381 aaccgtgccc aagagtgttt tggactcctg gacatctgcg tttaacacgc gcagacagcc
7441 gctcttcgca caccttcgta gaagggggga gtcaaatgtt tagtgaaaag attattttta
7501 aatttggttt gtaattggat ttaaa
//