Typing tool
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Typing tool
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Complete norovirus genomes
| LC597114 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5089
ORF2: 5070..6692
ORF3: 6692..7498
LOCUS LC597114 7532 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2016/GII.4Sydney2012[P31]/SOEP100 RNA,
comlete genome.
ACCESSION LC597114
VERSION LC597114.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7532)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7532
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2016/GII.4Sydney2012[P31]/SOEP100"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2016"
CDS <1..5089
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BCN97255.1"
/translation="ASNDASVAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQP
PPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETN
TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK
VELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPIVMGGIGLVLGFTREKIGKMLSSAASTLRACKDLGAYGLEILKLAMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMPDL
KQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETANKDGCLKP
KDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVAT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMI
RCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ
RDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5070..6692
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97256.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPHEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6692..7498
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97257.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRVNLRDAAPARGSSSKPS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSAARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ggcgtctaac gacgcttccg ttgccgctgt tgccaacagc aacaacgaca tcgcaaaatc
61 ttcaagtgac ggtgtgtttt ctaacatggc tgtcactttt aagcgggccc tcggggcgcg
121 gcctaaacag ccgcccccga aggaaatacc acccagaccc ccgcgaccac ccacaccaga
181 attggtcaaa aagatccctc ctcccccacc caacggggag gatgaactag tggtctctta
241 cagcgccaaa gatggcgttt ccggactgcc tgagctcacc actgtcagac aaccggaaga
301 aaccaacacg gcgtttagtg tccccccact caaccaaagg gagagcaggg acgccaagga
361 gccactaact ggaacaatca ttgaaatgtg ggatggagaa atctaccatt acggcctgta
421 cgtggaacga ggtcttatac ttggtgtgca taagccaccg gcagccatta gccttgccaa
481 ggtcgagcta gcaccgctct ctttgttctg gagacctgta tacacccccc agtatctcat
541 ctctccagac actcttagga gattacatgg agagtcattc ccctacactg catttgataa
601 caattgctac gccttttgtt gttgggtatt agacctgaac gactcatggc taagcaggag
661 aatgattcag agaacaacag gtttctttag gccgtaccag gattggaaca ggaaacccct
721 ccccactatg gatgattcca aattaaagaa ggtagccaac atattcttgt gtactttgtc
781 ttcactattc accaggccca ttaaggacat aatagggaag ttgaaacctc ttaacatcct
841 taacattctg gctacatgtg attggacctt cgcaggcata gtggaatcct taatactctt
901 ggcagaactc tttggagttt tctggacacc cccagatgtg tctgcgatga tcgccccctt
961 gctaggtgat tatgaactgc aaggacctga ggaccttgca gtggaactgg tcccaatagt
1021 gatggggggg ataggtttgg tgctaggatt taccagagag aaaatcggaa agatgttatc
1081 atccgctgca tccactttaa gagcttgtaa agaccttggt gcatacggac tggaaatctt
1141 aaaattggcc atgaaatggt tcttcccaaa gaaagaggaa gcaaatgaac tggctatggt
1201 gagatccatc gaggatgcag tgctagacct cgaggcaatt gaaaacaacc acatgaccac
1261 cctactcaaa gacaaagaca gcttggcaac ctacatgaga acccttgacc ttgaggagga
1321 gaaagccaga aagctctcaa ccaaatctgc ttcacccgat attgtgggca caatcaactc
1381 tcttctggca agaatcgctg ctgcacgttc cctagtgcat cgggcgaaag aagagctctc
1441 cagcaggccg agacctgtcg ttgtgatgat atcgggaaga ccagggatag ggaaaactca
1501 ccttgccagg gagctggcca agaagatcgc ggcctccctc acaggggacc agcgtgtggg
1561 tcttatccca cgcaatggtg tcgaccactg ggacgcatac aagggcgaga gagttgtcct
1621 atgggacgac tatggaatga gcaaccccat ccatgatgcc cttaggttgc aggagcttgc
1681 tgacacttgc cccctcacgc taaattgtga cagaattgag aacaaaggaa aagtctttga
1741 cagtgatgcc ataattatca ccaccaatct ggccaaccca gcaccgctgg attatgtcaa
1801 ctttgaggcg tgctcgagac gcattgattt cctcgtgtac gcagaagccc ctgaggtgga
1861 gaaggcaaag cgcgacttcc caggtcaacc tgacatgtgg aagaacgctt tcagtcctga
1921 cttctcacac ataaaactgt cattggctcc acagggtggt tttgacaaga acggcaacac
1981 cccacatgga aaaggggtca tgaagaccct caccactggc tccctcatcg cccgagcatc
2041 agggttactc catgagaggc tagacgaata tgaactgcaa ggcccagccc tcaccacttt
2101 caactttgac cgcaacaaga tacttgcttt tagacagctt gctgctgaaa acaagtatgg
2161 gctgatggac acaatgagag ttggaaaaca gctcaaggat gtcaagacca tgccagacct
2221 caaacaagca cttaagaaca tcgcgataaa gaagtgccag atagtgtaca atggtggcac
2281 ctacacactt gaggctgatg gcaagggtag tgtgaaagtt gacaaagtgc aaagtgccac
2341 tgtgcagacc aacaatgaac tagccggtgc cctacaccac ctaaggtgcg ctagaatcag
2401 atactatgtt aagtgcgtcc aggaggcact gtattccatc atccaaatcg ctggggctgc
2461 attcgtcacc acgcgcatcg ctaagcgcat gaatatacag aacctctggt ccaagccaca
2521 ggtggaagac acagaagaga cggccaacaa agatggttgc ctaaagccca aagatgaaga
2581 gtttgtcgtc tcatccgacg acatcaaaac tgagggcaag aaagggaaga acaagtccgg
2641 ccgtggtaag aagcacacag ccttttcaag caaagggctc agtgatgagg agtacgatga
2701 gtacaagaga atcagagaag aaaggaatgg caagtactcc atagaggagt accttcagga
2761 cagagacagg tactacgagg aggtggccat tgccagggca accgaagagg acttctgtga
2821 agaagaagag gccaaaatcc ggcagagaat tttcagacca acaaggaaac aacgtaaaga
2881 agagagggcc tctctcggct tggtcacagg ctctgaaatc aggaagagaa acccagaaga
2941 cttcaaaccc aagggaaagc tgtgggctga tgacgacaga agtgttgact acaatgaaaa
3001 actcaacttt gaggccccac caagcatctg gtcgcggata gtcaactttg gttcaggctg
3061 gggtttctgg gtctccccca gtttgtttat aacatcaacc catgtcatac cccaaggtgc
3121 aaaagagttc ttcggggtcc ctatcaagca aatccagata cacaagtcag gtgaattctg
3181 ccggttgaga ttcccaaagc caatcagaac tgatgtgacg ggcatgattc tagaagaagg
3241 cgcgcccgag gggaccgtgg ccacactgct catcaagagg ccaactggag agctcatgcc
3301 tctggcagcc agaatgggga cccatgcaac catgaaaatt caggggcgca cagttggagg
3361 gcaaatgggt atgctcctga caggatccaa cgccaagagt atggacctag gcacaacacc
3421 aggcgactgc ggctgcccct acatctacaa gagggggaat gactacgtgg tcataggggt
3481 ccatacggcc gctgcccgtg ggggaaacac tgtcatatgt gccacccagg ggagtgaggg
3541 agaagccaca cttgaaggag gtgacagcaa agggacatac tgtggcgcac caatattggg
3601 cccagggagt gctccgaagc tcagtaccaa gactaagttt tggaggtcat ccacaacacc
3661 actcccgcct ggcacctatg aaccagccta cctcggtggt aaagacccta gagtcaaagg
3721 tggcccttca ttgcaacaag ttatgaggga ccagctaaag ccattcacag aacccagagg
3781 caaaccacca agaccaaatg tgttggaagc tgccaagaaa accatcatca atgtccttga
3841 gcaaacaatt gacccacccc aaaaatggtc atttgcgcaa gcttgcgcat cccttgacaa
3901 aaccacctcc agcggccacc cgcaccacat gcggaaaaac gactgttgga atggggagtc
3961 cttcacagga aaattggctg atcaagcctc caaggccaac ctaatgtttg aagagggaaa
4021 gaacatgact ccagtctaca caggtgcact taaagatgag ttggtgaaaa ccgataaagt
4081 ttatggtaag gtcaagaaga ggcttctgtg gggttcagat ctggcgacca tgatacggtg
4141 tgcccgagct tttggaggcc ttatggatga actcaaggca cactgtgtca cacttcctgt
4201 cagagttggt atgaacatga atgaggatgg ccccatcatc tttgagaagc actccagata
4261 tagataccac tatgatgctg attattcccg gtgggactca acacaacaaa gggatgtgct
4321 agcagcagca ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt
4381 tgcagaagac ctcctttccc ctagcgtgat ggatgtaggt gattttcaaa tatcaataag
4441 tgagggtctc ccctctgggg taccttgtac ctcccagtgg aattccatcg cccactggct
4501 cctcactctg tgcgcactct ctgaagtcac ggacctgtcc cctgatatca ttcaggccaa
4561 ctccctgttc tccttctatg gtgatgatga gattgtaagc acagacataa agttggaccc
4621 agagaagctg acagcaaaac tcaaggagta cgggctgaaa ccaacccgcc ccgacaaaac
4681 tgaaggaccc cttgttatct ctgaagacct ggatggcctg acattcctcc ggagaactgt
4741 gacccgtgat ccagctggct ggtttggaaa attggaacaa agttcaattc tcaggcaaat
4801 gtactggacc aggggtccca accatgaaga tccatttgaa acaatgatac cacactccca
4861 aagacccata caattgatgt ccttgctggg cgaggctgca ctccacggcc cggcattcta
4921 tagcaaaatt agcaaattag tcattgcaga gttgaaggaa ggtggcatgg acttttacgt
4981 acccagacaa gagccaatgt tcagatggat gagattctca gatctgagca cgtgggaggg
5041 cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgagtgac gccaacccat
5101 ctgatgggtc cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctttggagc
5161 ccgttgttgg tgccgccatt gcggcacctg tagcgggcca acaaaatgta attgacccct
5221 ggattagaaa taattttgta caagcccctg gtggagagtt tacagtatcc cctagaaacg
5281 ctccaggtga aatactatgg agcgcgccct tgggccctga cctaaatccc tacctatccc
5341 atttggccag aatgtacaat ggttatgcag gtggttttga agtgcaggta attctcgcgg
5401 ggaatgcgtt caccgccggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg
5461 aaggcttgag ccccagccag gtcactatgt tcccccatat agtagtagat gttaggcagt
5521 tagaacctgt gctgattccc ttacccgatg ttaggaataa tttctatcat tataatcaat
5581 caaatgatcc caccattaag ttgatagcaa tgttgtatac accacttagg gctaataatg
5641 ctggggatga tgtcttcaca gtttcttgcc gagttctcac gagaccatcc cccgattttg
5701 atttcatatt tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag
5761 ttttaactgt tgaggagatg accaattcaa gattccccat tcctttggaa aagttgttca
5821 cgggtcccag cagtgccttt gttgtccaac cacaaaacgg taggtgcacg actgatggcg
5881 tgctcctagg caccacccaa ctgtctcctg tcaacatctg caccttcaga ggagatgtca
5941 cccatatcac aggtagtcgt aactacacaa tgaatttggc ttctcaaaat tggagcaatt
6001 atgacccaac agaagaaatc ccagcccctc taggaactcc agattttgtt gggaagattc
6061 aaggcatgct cacccaaacc acaaggacag atggctcaac acgcggccac aaagccacag
6121 tgtacactgg gagcgccgac tttgctccaa aactgggtag agttcaattt gaaacagaca
6181 cagaccatga ttttgaagct aaccaaaaca caaagttcac cccagttggt gtcatccaag
6241 atggcagcac cacccaccga aatgaacccc aacagtgggt gctcccaagt tactcaggca
6301 gaaacactcc caatgtgcat ctggcccccg ctgtagcccc cacttttccg ggtgagcaac
6361 ttctcttctt cagatctacc atgcccggat gcagcgggta ccccaacatg gatttggact
6421 gtctgctccc ccatgaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg
6481 atgtggctct gctaagattt gtgaatccag acacaggtag ggttttgttt gagtgtaagc
6541 ttcataaatc aggctatgtt acagtggctc acactggcca acatgatttg gttatccccc
6601 ccaatggtta ttttaggttt gattcctggg tcaaccagtt ttacacgctt gcccccatgg
6661 gaaatggaac ggggcgtaga cgtgcactat aatggctgga gctttctttg ctggattggc
6721 atctgatgtc cttggctctg ggcttggttc ccttatcaat gctggggctg gggccatcaa
6781 ccaaaaagtt gagtttgaaa ataacaggaa attgcaacaa gcatccttcc aatttagcag
6841 caatctacaa caggcttcct ttcaacatga caaagagatg ctccaagcac aaattgaggc
6901 caccaaaagg ctacaacagg aaatgatgaa agttaagcag gcaatgctcc tagagggtgg
6961 gttctctgaa acagatgcgg cccgcggggc aatcaacgcc cccatgacaa aagctttgga
7021 ctggagcggg acaaggtact gggctcccga tgctaggact acaacataca atgcaggccg
7081 cttttccacc cctcaaccat caggggcact gccgggaaga gtcaatctta gggatgctgc
7141 ccctgctcgg ggttcctcca gtaagccttc taattcttcc actgctactt ctgtgtactc
7201 aaatcaaact atttcaacga gacttggttc tacagctggt tctggtacca gtgtctcgag
7261 cttcccatca gctgcaagga ctaggagctg ggttgaggac caaagtagga atttgtcacc
7321 tttcatgagg ggggcccaca acatatcgtt tgtcacccca ccatctagca gatcctctag
7381 ccaaggcaca gtctcaaccg tgcctaaaga gattttggac tcctggactg gcgctttcaa
7441 cacgcgcagg cagccactct tcgctcacat tcgtaagcga ggggagtcac gggtgtaatg
7501 tgaaaagaca aaattgatta tctttctttt ct
//