Typing tool
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Typing tool
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Complete norovirus genomes
| LC597111 | GII.13 | |
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| GII.P16 |
ORF1: 4..5094
ORF2: 5075..6703
ORF3: 6703..7434
LOCUS LC597111 7498 bp RNA linear VRL 14-JAN-2021
DEFINITION Norovirus GII GII/Hu/ID/2015/GII.13[P16]/SOEP45 RNA, nearly comlete
genome.
ACCESSION LC597111
VERSION LC597111.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Utsumi,T., Lusida,M.I., Dinana,Z., Wahyuni,R.M., Soegijanto,S.,
Soetjipto, Athiyyah,A.F., Sudarmo,S.M., Ranuh,R.G., Darma,A.,
Juniastuti, Yamani,L.N., Doan,Y.H., Shimizu,H., Ishii,K.,
Matsui,C., Deng,L., Abe,T., Katayama,K. and Shoji,I.
TITLE Molecular epidemiology and genetic diversity of norovirus infection
in children hospitalized with acute gastroenteritis in East Java,
Indonesia in 2015-2019
JOURNAL Infect Genet Evol 88, 104703 (2021)
PUBMED 33401005
REMARK DOI:10.1016/j.meegid.2020.104703
Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7498)
AUTHORS Utsumi,T. and Shoji,I.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2020) Contact:Takako Utsumi Kobe University
School of Medicine, Center for Infectious Diseases; 7-5-1
Kusunoki-cho Chuo-ku, Kobe, Hyogo 650-0017, Japan
FEATURES Location/Qualifiers
source 1..7498
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII/Hu/ID/2015/GII.13[P16]/SOEP45"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Indonesia"
/collection_date="2015"
CDS 4..5094
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BCN97246.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
AKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTVTTFNFDRNRIAAFRQLAAENKYGLVDTMRVGNQLKGVKTME
ELKQAIKNVIIKRCRIIYGGSTYDLESDGKGRVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSILQIAGAAFVTTRIVRRMNIQELWSKPPLDQNESEAEKEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERVTLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRSDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKTHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5075..6703
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BCN97247.1"
/translation="MKMASNDAAPSNDGAASLVPEAINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANSGDNWDQNLLQLTYPSGASYDPTDEVPAPLGTQDFSGILYG
VLTQDNVSEGTGEAKNAKGVYISTTSGRFTPKIGTIGLHSITENVHPNQQSRFTPVGV
AQNENTPFQQWVLPHYAGALALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLRGQDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGTYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6703..7434
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BCN97248.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRAQVKSPSNSSQRTAAPSSIRSLSTQSTSLGSTS
SGGSSTTSSSSRTADWVQQQRALSPYMQGALQTAYVTPPSSRASSMSSVSTVPKGVLD
SWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 aagatggcgt ctaacgacgc taccgttgcc gttgcttgca acaacaacaa cgacaaggaa
61 aaatcttcag gtgaaggctt attcacaaac atgtcttcca ccttaaagaa agccctcggg
121 gcccggccca aacagcctgc cccgagggac aactcacaaa aacccccaag accaccaact
181 cccgagttgg tcaagaggat accccctccc ccacctaatg gagaagaaga agaaccagtc
241 attaggtatg aggttaagag tggaatctct ggcctgcccg agctcacaac agtccctcaa
301 ccggatgtgg ccaacacggc attcagtgtc ccaccgctga gcttgagaga aaacagggag
361 gccaaggaac cgctgacagg ggcaatatta gagatgtggg atggagagat ataccactat
421 ggtctgtacg tggagaaagg cctagtgttg ggtgtgcaca aaccacctgc agctataagc
481 atggcaaaag tggagctgac gccgttgtca ttgtactggc gtgtggtcta caccccccaa
541 tacctcatct cccctgaaac tctcaggagg ctcaacggag aggcattccc ttacactgcc
601 tttgacaaca actgctatgc cttttgctgt tgggtattag acctcaatga ctcatggctt
661 aacaggagga tggtgcaaag aacaacaggc ttcttcagac cttatcaaga gtggaacaga
721 aaacccctgc ccactatgga tgactccaaa atcaagaagg tggcaaacat attcctgtgt
781 tcattgtcca cgttgttcac cagacctata aaagacctca taggaaaaat taagccatta
841 aacatcttga acatcctggc aacgtgtgac tggacattcg ccggaatagt ggagtctctg
901 atattacttg ctgaactctt tggagttttc tggacacccc cagatgtgtc tgctatgatc
961 gctcctttac ttggagacta cgagttgcaa gggccagaag accttgccgt tgagctcgta
1021 cctgtagtaa tgggagggat tggtttggtg ttgggattca ccaaagagaa aattggaaaa
1081 atgttgtcct cagcagcatc aacgctcagg gcttgtaaag atcttggtgc ctatggctta
1141 gagatactca aattggtcat gaagtggttc ttcccaaaga aagaagaggc caatgagcta
1201 gccatggtga gagctataga ggatgctgta ctggatcttg aggcaataga aaataatcac
1261 atgacaactc tgttgaaaga caaagacagc ctagcaacct acatgaaaac actagacatg
1321 gaggaggaaa aagccagaag attgtccaca aaatctgcat cccctgacat agttgggacg
1381 atcaacgccc tgctggctcg aatagcagcg gctaggtcac tagtccacag ggccaaggag
1441 gagttatcta gcaggataag accagtggtt gttatgatat ctggtaaacc agggataggc
1501 aaaactcatc tggccaggga ggtggcaaga aaggtggcat ccactctcac aggggatcaa
1561 agagtcgggc tcataccgag aaacggtgtg gaccattggg atgcatacaa aggtgagaga
1621 gtcgtgctgt gggacgacta tggcatgagc aaccccattc atgatgctct gcgcatacaa
1681 gaattggctg atacgtgccc ccttacctta aattgtgaca gaatcgaaaa taagggaaaa
1741 gtttttgaca gtgaagtcat aataatcaca acaaaccttg ccaatccagc tccacttgat
1801 tatgtcaact ttgaggcctg ttccaggaga attgactttc tggtgtacgc cgaggcacca
1861 gaagtagaaa aggcgaaacg agactttcct ggtcaaccag atatgtggaa ggacgccttc
1921 aagtcggact tttcacatat caagttgcaa cttgcacctc agggcggctt tgacaagaat
1981 ggcaacaccc cacatgggaa aggagtgatg aaaaccctca ccaccggttc cctgatcgcc
2041 cgtgcatcag gcttactgca tgagagaatg gatgaatttg aactccaagg ccccacagtc
2101 accaccttca attttgaccg gaacagaatc gctgcattca gacaattggc tgcagaaaac
2161 aagtatggat tggtggacac catgagagtt ggcaatcaat taaaaggggt gaaaaccatg
2221 gaagaactca aacaagcaat caagaatgtg atcatcaaga ggtgccggat catctacggc
2281 ggctccacgt atgaccttga atctgatggc aagggcagag ttctggtgga aaaggtcaag
2341 aacacctctg tacagaccaa caacgagttg gccggagccc tgcatcacct caaacatgct
2401 cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct actctatttt acaaatcgcc
2461 ggcgctgcgt ttgtcaccac acgcatagta cgccgcatga acatacaaga gctttggtcg
2521 aagccaccat tagaccaaaa tgaatcagag gctgagaaag aggcccccaa gtcagaagat
2581 gacgagttca tcatatcttc taaggacatc aaggaggaag gaaagaaggg caaaaacaaa
2641 actggccgtg gcaagaaaca tactgcattc tctagcaagg gcttgagcga tgaggagtat
2701 gacgagtaca agaggataag agaagagaga aatgggaagt actctataga ggagtatctt
2761 caagacagag acaggtacta tgaggaactc gccatcgcca aggccacgga agaagacttc
2821 tgtgaggagg aggagatcaa aatccgtcag aggatcttcc gtcccaccag gaagcaaagg
2881 aaggaagaga gggtcacact agggctagta actggttcag aaatcagaaa aagaaaccct
2941 gatgacttca aacctaaagg gaaactgtgg gctgatgaca acagaagtgt tgactacaat
3001 gagaaactgg actttgaggc ccccccaagc atatggtcta ggattgtgag ttttggttct
3061 ggttggggct tctgggtgtc accaagcctg ttcataacat caactcacgt aatccctgca
3121 ggcataacag aggcatttgg agtccccatc aaacaaatcc aggtccacaa atcaggtgaa
3181 ttttgtcggt tcagattccc aaaaccaatt agatcagatg tgacaggaat gatcttggag
3241 gaaggtgcgc ctgagggcac cgtggcaacc gtgctcatta aacgccctac cggagagctc
3301 atgccccttg cagccagaat gggaacacac gcaaccatga aaattcaggg ccgcatggtt
3361 ggcgggcaga tgggtatgtt gctcactggt tcaaatgcta aaggaatgga tttgggaaca
3421 actcctggtg attgtggctg tccctacatc tacaaaaggg gcaatgacta tatagtcatt
3481 ggggtgcaca cagcagcagc ccgtggtgga aacaccgtca tctgtgccac acagggaagt
3541 gagggtgagg caactcttga gggtggagat gacaaaggaa catactgtgg ggcacccatt
3601 ctaggccctg ggggggcacc aaaattgagc accaaaacca aattttggag gtcatcgaac
3661 acgcctcttc caccagggac gtatgagcct gcctacctcg gtggccgcga cccgcgtgtt
3721 aagggtgggc cctccttgca gcaggtaatg agagaccagt tgaagccatt taccgagccc
3781 aggggtaaac ctccaagacc aagtgtgttg gaagcagcta aacaaaccat catcaatgtc
3841 ctcgaacaaa ccctggaccc tccacaaaaa tggacatacg cacaggcgtg tgcttcactt
3901 gacaaaacca cctccagcgg gcatccccac cacgtccgaa agaatgaatt ctggaatggt
3961 gagaccttca ctggtaaatt ggcagaccaa gcatcaaaag caaatttaat gtttgaggaa
4021 gggaaacaca tgacaccagt gtatacagca gccctcaagg atgagctggt caagacagac
4081 aaagtctatg gaaagatcaa gaagagactg ctctggggct ctgacttgtc caccatgatc
4141 cggtgcgcca ggtcttttgg tgggctcatg gatgagatga aaacacactg catatcactc
4201 ccagtccgag ttggcatgaa catgaatgaa gatggtccaa taatatttga gaagcactcc
4261 agatacaagt atcactatga tgcagattac tcccgctggg attcaacaca acagagggca
4321 gtactagcag cagccttgga gatcatggtc aggttctctg cagagccaca attggcacaa
4381 atagtcgctg aggatctgct ggcccccagt gtggtagatg taggagactt taaaatttca
4441 ataaatgaag ggctcccctc tggtgtacca tgcacttctc aatggaattc catcgcacac
4501 tggctgctaa ccctctgcgc cttgtctgaa gtcaccaaac tgtcccctga cattgtacag
4561 gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga tataaaattg
4621 gaccctgaaa agttaaccac caaattgaaa gagtacggcc tgaaaccaac tcgcccagac
4681 aaaaccgaag gacccctgat catcagtgag gatttgaacg gactcacttt cctccggagg
4741 acggtgactc gtgacccagc tggctggttt ggaaagttgg accaaagctc aatattgagg
4801 cagatgtact ggactagagg accaaatcat gaagacccca atgagacaat gataccccac
4861 tctcaaagac ccatacagct catggcactg cttggtgagg cctcccttca cggaccctct
4921 ttctacagca aaattagtaa gttggtcata actgaactca aagaaggtgg gatggacttt
4981 tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg
5041 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatcgaat gatggtgcag ctagtctcgt accagaggcc attaatgaga ctatgccatt
5161 ggaacccgtt gctggcgcat ctattgctgc cccagtggcg ggacaaacta acataattga
5221 cccctggata agaacaaatt ttgtgcaagc ccctaatgga gagtttacag tgtcaccgag
5281 aaattcccct ggagagattt tattaaattt agagttagga ccagatttga atccttattt
5341 ggcccatcta tcaaggatgt acaatggata tgctggaggt gttgaggtgc aagtgcttct
5401 tgctgggaac gcgttcacag caggaaagat attatttgca gcaatcccac ccaactttcc
5461 tgtagatatg atcagcccag ctcaaattac tatgcttccc catttgattg tagatgttag
5521 gacattggaa cctattatga tacccttacc tgatgttagg aatgtgttct atcattttaa
5581 taatcaaccc caacctagga tgagattagt ggctatgctc tataccccat tgagatctaa
5641 tggttcagga gatgatgtct ttactgtgtc ttgtagagtg ttgactaggc caacccctga
5701 ctttgaattc atttacctag tgcctccctc tgtagagtcc aaaactaaac cattcacact
5761 tccaatattg accatttctg aactaaccaa ctcccggttt cccatcccaa ttgagcaact
5821 gtacacggcc ccaaatgaga ataatgttgt acagtgtcaa aatggaaggt gcaccttgga
5881 tggagagctt cagggcacca cccagctatt atcaagtgca gtctgctcgt acaggggcag
5941 gactgtggct aacagtgggg acaattggga ccagaatttg ctccagctga cctacccaag
6001 cggtgcaagc tatgacccca ctgatgaagt accagcaccc ttgggcaccc aggatttcag
6061 tgggatattg tatggggtgt taacccaaga taatgtgagt gagggtacag gggaggccaa
6121 aaatgctaag ggagtataca tatccaccac cagtggaaga ttcaccccaa aaattgggac
6181 aattggattg cattcaataa ctgaaaatgt gcaccccaat cagcaatcac ggttcacccc
6241 cgttggagtc gctcagaatg aaaacacccc cttccagcaa tgggttctac cacactacgc
6301 aggtgctctt gctctaaata ccaatttggc acccgctgtt gccccgactt tccctggcga
6361 gcaattactg ttcttcaggt cccgtgttcc atgtgttcaa ggtctgcggg ggcaggatgc
6421 tttcatagat tgtctcctac ctcaagagtg ggtgaaccat ttttatcaag aggctgctcc
6481 ctcccaagca gacgttgccc tcatcaggta tgtcaaccct gatactggtc gcacgttgtt
6541 tgaggccaaa ttgcacaggt caggtttcat tactgtatca cacactggta cctaccctct
6601 tgtggtcccc ccaaatggtc atttcaggtt tgattcttgg gttaaccaat tctactcact
6661 cgcccccatg ggaactggca atgggcgtag aagagttcaa taatggcagg agcattcata
6721 gctggtctag ccggtgacat gctgacttct gctgttggtt cactgacctc tgcaggagcc
6781 aatgccatca atcagaaatt gaattttgat tacaataaac aactccaaaa tgcatccttt
6841 caacatgata aggaaatgtt gcaggcccaa attgatgcta caaagaagct ccagtcagag
6901 atgattgcaa ttaagcatgg ggttctgacc gcgggcggct tttccccagc tgatgcagcc
6961 agaggggcag tcaacgcccc aatgactcga gtgttggatt ggtcagggac acgctactac
7021 gctccaaatt ctgtgcaaac caccagttat tctgggcaat tcaccccctc gcctgtccat
7081 cgggcgcagg tgaagtcccc ttccaattcg tctcagcgga ctgcagctcc aagcagtatc
7141 cgcagcctgt caacccaatc aacttcttta ggctctacct cctcaggggg gtcctctaca
7201 acctcctcca gttcgaggac agcagactgg gtgcaacaac aaagggctct tagcccgtac
7261 atgcagggag ccctgcagac ggcatacgtc acaccgccgt ctagtagggc ttccagtatg
7321 agctctgtct caacagtgcc caaaggggtt ttggactcct ggacacctgt gtttaacaca
7381 cgcaggcagc cgctgtttgc acacctcagg aagagggggg agtcacaggc ttagtgaaaa
7441 ggataatcag cttttaaatg tgattttatt ttccttttaa aaaaaaaaaa aaaaaaaa
//