Typing tool
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Typing tool
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Complete norovirus genomes
| LC556391 | GII.14 | |
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| GII.P7 |
ORF1: 1..2382
ORF2: 2363..3970
ORF3: 3970..4764
LOCUS LC556391 4808 bp RNA linear VRL 01-JUL-2020
DEFINITION Norovirus GII.14 2018/TH/S3_110_NGS ORF1, ORF2 and PRF3 genes for
non-structural protein precursor, major capsid protein VP1 and
minor capsid protein VP2, partial and complete sequence.
ACCESSION LC556391
VERSION LC556391.1
KEYWORDS .
SOURCE Norovirus GII.14
ORGANISM Norovirus GII.14
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Nonthabenjawan,N., Boonyos,P., Phattanawiboon,B., Towayunanta,W.,
Chuntrakool,K., Ngaopravet,K., Ruchusatsawat,K., Uppapong,B.,
Sangkitporn,S., Mekada,E., Matsuura,Y., Tatsumi,M. and Mizushima,H.
TITLE Identification of GII.14[P7] norovirus from a case of long-term
infection in a post-symptomatic individual
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4808)
AUTHORS Mizuhima,H., Nonthabenjawan,N., Boonyos,P. and Phattanawiboon,B.
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2020) Contact:Hiroto Mizuhima Thailand-Japan
Research Collaboration Center on Emerging and Re-emerging
Infections, Department of Medical Sciences, Ministry of Public
Health; Tiwanon Raod, Muang, Nonthaburi 11000, Thailand URL
:http://rcc-eri.biken.osaka-u.ac.jp/thailand/ viral_infections/
FEATURES Location/Qualifiers
source 1..4808
/organism="Norovirus GII.14"
/mol_type="genomic RNA"
/strain="2018/TH/S3_110_NGS"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:579114"
/country="Thailand: Bangkok"
/collection_date="2018-07-31"
gene <1..2382
/gene="ORF1"
CDS <1..2382
/gene="ORF1"
/codon_start=1
/product="non-structural polyprotein precursor"
/protein_id="BCG68416.1"
/translation="RIREERNGKYSIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKI
RQRIFRPTRKQRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFE
APPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGIRELFGVEIKQIQIHKSGEFCRF
RFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGG
QMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQ
DGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDP
RVEKGPSLQQVMRDQLRPFTEPRGKPPRPAILDEAKKTVMNVLEQTIDPAKPWSYSQA
CASLDKTTSSGSPHHVRKNNHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKD
ELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDG
PIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPS
QLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPEVIQAHSCFSFY
GDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDP
AGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKK
VSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 2363..3970
/gene="ORF2"
CDS 2363..3970
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="BCG68417.1"
/translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASLAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPILRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAKLSEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAVLYGV
ASQRSSNNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDDQ
HPFKQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLPQ
EWIEHFYQEAAPSQSDIALVRFINPDTGRVLFEGKLHKQGFLTIAASGDHPIVMPTNG
YFRFEAWVNPFYTLAPVGTGSGRRRIQ"
gene 3970..4764
/gene="ORF3"
CDS 3970..4764
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="BCG68418.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVKAPMTQILDWNG
SRYWAPNSMKTTGYSGTFSSQGIRSSPHLSNQTPSAVKSTRSLPSISSSSSVYSSPSI
APSQSTQSTTLSAGTGSSRPNTVSTKTSTLSRTSDWVRGQNEMLGPFMNGALQTVYVT
PPSSKASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 aggattaggg aagaaagaaa tggaaagtac tccattgagg aatacctgca ggaccgagac
61 cgctattatg aagaagtagc agttgctcgg gcgacagagg aggacttctg tgaagaggaa
121 gaggccaaga taagacaaag aattttccgc ccgacaagga aacagaggaa ggaggaaagg
181 ggcgtgctcg gcttggtcac cggctcagac atcaggaaga gaagaccaga cgattttcaa
241 ccaaaaggca atctatgggc agatgacacc agaagtgtgg actacaatga gaggcttgat
301 tttgaagcac ccccgagtgt ctggtcaaga atagtcccac taggcaccgg ttgggggttt
361 tgggtttcat ccaaccttct gatcacaacg acacacgtcc tacctaaagg gatcagggag
421 ctctttggag ttgaaatcaa acaaatccaa attcataagt ctggagagtt ttgcaggttt
481 agattcccaa gacctatcag gccagatgtc acaggactcg tgctggagga gggtgcccca
541 gagggcactg tctgttctat actcgtgaaa agacccacgg gtgaaatgat cccccttgca
601 gtgaggatgg gtacacacgc atccatgaaa atacagggca ggaccgttgg tggccaaatg
661 ggaatgctcc tcacaggggc gaacgcaaag aacatggatc ttggcaccgg ccctggtgac
721 tgcggttgcc cctacatcta caagcgtggc aacgacatcg ttgtcgcggg cgtccacacc
781 gcagcagccc ggggaggcaa cactgtaata tgtgctaccc aggggcaaga tggggaagca
841 gtccttgagg ggaacgagga ccttggcacc tactgtggtg ccccaattct gggccctggc
901 aaggcgccta aactcagcac gaagaccaag ttttggcgct catcaccaga tgccctgcca
961 cctggcacat atgaacctgc ttacctagga ggtaaagacc ctagagtgga aaaaggtccc
1021 tccctgcaac aagtcatgag agaccagttg aggcccttca cggaacccag aggcaaacca
1081 cctagacctg caattttgga tgaagccaaa aagacagtaa tgaatgttct agagcaaacc
1141 attgaccctg ccaagccatg gtcctattcg caggcatgtg cctcattgga caaaaccact
1201 tcaagtggta gtccccatca cgttaggaaa aataaccact ggaatgggga gtccttcact
1261 ggtccccttg cagaccaggc ttctaaagcc aacctcatgt acgagcaggc taaacatgtg
1321 cagcccgtgt atacggctgc gcttaaagat gagcttgtta agactgacaa gatctacaag
1381 aagataaaga agaggcttct atgggggtca gaccttggca caatgatcag gtgcgccagg
1441 gcttttggtg gtctcatgga cagtatgaag gcaagctgca tagctcttcc ttgcagggta
1501 ggaatgaaca tgaatgaaga tggccccatc atatttgaca aacactctaa gtataggtac
1561 cactatgatg ctgactattc taggtgggac tcaacccaac aaaggagcat cctctctgcc
1621 gctatggaag tgatggtgcg gttttctgct gaaccagaat tggcacaagt ggttgcagag
1681 gaccttttgg cacctagcca gcttgatgtt ggcgactttg ttatctcagt ccaggaaggc
1741 ctgccatcag gagtcccatg cacatcgcaa tggaattcaa tagcacactg gatactcact
1801 ttgagtgcga tggcagaagt gtcaggcctc tcaccagaag ttatccaagc tcactcttgt
1861 ttttcatttt atggggacga tgagatcgtc agcactgaca tcaaccttga ccccatgaag
1921 ttaacacaaa aacttaggga gtatggcctg gttcccaccc gtcctgacaa aactgaaggt
1981 cccctcgtca taactgaaga cctcaccggc ctgacgttcc ttcgtagatc gattgctcgg
2041 gacccagctg gctggtttgg aaaactagac caagattcaa tcctcaggca attgtactgg
2101 acaagggggc ccaaccatga gaacccgtac gagagcatgg ttcctcattc tcagcgggcc
2161 acacaactca tggcccttct tggtgaagcc tcactgcatg gtcctcagtt ttacaagaaa
2221 gttagcaaaa tggtcatcaa tgaaattaag agtggtggtc tggaatttta cgtgcccaga
2281 caagaggcca tgttcagatg gatgagattc tctgacctca gcacgtggga gggcgatcgc
2341 aatcttgctc ccgaaggtgt gaatgaagat ggcgtcgaat gacgctactc catctgatga
2401 tggtgcagcc ggcctcgtac cagagatcaa caatgaggtt atggctcttg aacccgttgc
2461 tggggcctcc cttgcagccc ccgtagtcgg tcaacagaat ataattgatc cctggattag
2521 aaataatttt gtacaagccc ctgctggtga atttacagtt tcccctagaa actctcctgg
2581 agaactccta cttgatttgg aattgggtcc tgaacttaac ccctatcttg cacatttggc
2641 caggatgtac aatgggcacg caggaggaat ggaagtgcag atagtactgg ctgggaatgc
2701 gttcacagct ggtaagatcc tatttgccgc catcccacct agcttccctt atgaaaattt
2761 gtcacccgcc caattgacta tgtgccccca tgtgatagtg gatgtgagac aattagaacc
2821 agtactcttg ccaatgccag atataagaaa tgttttctat cattataatc agaacaacag
2881 tcccaaactt aggcttgtag ctatgcttta cactcctctg agggccaata attcaggtga
2941 tgatgtgttc acggtgtctt gccgcgttct aacgcgccct tctccagact tccagttcac
3001 tttcctggtc ccacctacag ttgagtctaa aactaagaac tttaccctcc ccattctcag
3061 agtctcagag atgacgaact caaggttccc cgttgttttg gaccaaatgt acacaagcag
3121 gaatgaaaac atcattgtcc aaccccaaaa cggcagatgc acaactgatg gtgagctgct
3181 tggcaccact atcttacaat ctgtgtctat ttgcaatttc aaaggaacaa tgcaggcaaa
3241 gctgagtgaa gaaccacgat accaattgca actcaccaac ttggatggat cacccataga
3301 tccaacagat gatatgcctg cccctcttgg cacaccagac ttccaggccg tgttatatgg
3361 cgttgcaagc caacgctctt ccaacaatgc cactagggca catgatgcac agattgacac
3421 tgctggtgac acattcgccc ccaaaattgg ccaggttcga tttaaatcaa gttccaatga
3481 ttttgatcta catgacccta caaagttcac acctattggt gtcaatgtgg atgaccagca
3541 cccttttaaa cagtggtccc tgccaaacta cggtggtcac cttgccctga acaatcactt
3601 agccccagct gtgacaccgc tctttcctgg cgagcagatc ttgttcttta ggtcatacat
3661 tccaagcgcc ggaggccaca cagacggtgc tatggactgt ttgctgcccc aagagtggat
3721 agagcacttc taccaggagg cggctccttc ccaatctgac atcgcactgg taaggttcat
3781 caaccctgac acaggaagag tgctctttga aggcaaattg cataaacaag gtttcctcac
3841 aattgctgca tctggagacc accctattgt gatgcccact aatggttact ttaggtttga
3901 ggcttgggtt aatcctttct acactctcgc ccccgtggga actgggtctg ggcgcaggag
3961 gattcaataa tggctggagc tttccttgca ggtttggcag gtgacgttgt gacttccagc
4021 ttgggctcac tcgtgggtgc tggagccaac gccatcaacc aaaaagtgga gtatgacttc
4081 aacaggcaac tccaggaggc atctttcaga catgataagg atatgctcaa agcccaggtt
4141 gcagcaacag caggtcttca acaagccatg atagacatca agcgggaggc attgaccgca
4201 ggcggctttt cccccgctga tgctgcaaga ggtgcagtca aggcacctat gacgcagatt
4261 cttgattgga atggttctag atattgggct cctaactcca tgaagacaac tggctactca
4321 ggtacatttt cttctcaagg tattagaagt tcccctcacc tgtctaatca aaccccaagt
4381 gctgttaaat ctactagatc tttaccatct atatctagtt cttctagtgt gtatagttct
4441 ccttctatcg ccccctcaca atcaacacaa tcaacaacgc tgtctgcagg gacagggtcc
4501 tccagaccta acactgtatc cacaaagact tccacattgt cgaggacaag tgattgggtc
4561 agaggtcaaa atgagatgct tggcccgttc atgaatggtg cactccaaac tgtttatgtc
4621 acaccaccat cgagcaaggc ctcatcacaa gggacggtct cgaccgtacc caaggctgtt
4681 ttggactcct ggactcccat gtttaacacc cacaggcagc ctctcttcgc ccacttgcgt
4741 aggcgagggg agtcacagat ttagtgaaaa ggatgattag ggtttcttcc tttccccttc
4801 ttattctt
//