Typing tool
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Typing tool
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Complete norovirus genomes
| LC373451 | GII.6 | |
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| GII.P7 |
ORF1: 1..5079
ORF2: 5060..6703
ORF3: 6703..7479
LOCUS LC373451 7559 bp RNA linear VRL 07-DEC-2023
DEFINITION Norovirus GII NoV/Hu/JP/2014/GII.P7-GII.6/MI-71 POL, VP1, VP2 genes
for nonstructural polyprotein, capsid protein VP1, capsid protein
VP2, partial and complete cds.
ACCESSION LC373451
VERSION LC373451.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in Japan
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7559)
AUTHORS Doan,Y.H., Katayama,K., Kimura and H.
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2018) Contact:Yen Hai Doan National Institute of
Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
Japan
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="NoV/Hu/JP/2014/GII.P7-GII.6/MI-71"
/db_xref="taxon:122929"
/country="Japan:Miyagi"
/collection_date="2014"
/note="genotype: GII.P7-GII.6"
gene <1..5079
/gene="POL"
CDS <1..5079
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBD06040.1"
/translation="NDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLGAV
PKGTKAPSSDQHCPSVKIGAKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQNEH
ENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISL
ATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTW
LSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKL
KPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGPEDL
AVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPK
KEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTK
SSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLA
KSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCP
VTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKV
KRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVA
GLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTLE
DLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLRQ
ARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEVAQG
RWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEY
LQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRK
RRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTT
HVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILV
KRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIY
KRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKL
STKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRP
AVLEEAKKTVMNVLEQIIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTG
PLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCA
RAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSI
LSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIA
HWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPT
RPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYE
SMVPHSQRATQLMALLGEASLHGPKFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMR
FSDLSTWEGDRNLAPEGVNEDGVE"
gene 5060..6703
/gene="VP1"
CDS 5060..6703
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBD06041.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRARNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESSDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMSLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6703..7479
/gene="VP2"
CDS 6703..7479
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBD06042.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 aacgacgcta ccactgcctt tggcagccaa aactctgtca atgacagtat caacaccgcc
61 ccttctaata aagaagaggt tggtgcattc tccaacatca aagttggttt taagaaaatg
121 ctgggtgccg ttcccaaggg gaccaaagca cccagtagtg atcagcactg cccctcagtt
181 aagatcgggg ccaagacatt aacagttccc cctgagcccc caaatggtga agacaccgtg
241 cagtttgatg cgaagtcgga aactgtacgc gggttaccag acttgacaac ggtgcagaat
301 gagcacgaaa acacaccata cactgtcccc ccattgagtg aaagagagca cagaccagct
361 actgaaccgc ttcctggcac aatactggag atgtgggatg gtgaattcta ccattactct
421 gtgtacgtca gcggtggcaa agccctaggg gttcacaagc cccctgcagc gataagcctc
481 gcgacgatag agctcacacc catatctctt tattggaggc ccgtttacac ccccaactat
541 ctggtctgcc cagacacgtt gaagggcctt gctggtgaga agttccccta cacggccttc
601 agcaacaact gttacaactt ctgttgctgg gtgcttgagc tcaatgacac gtggcttagc
661 aggagaagca tctctaggac caccggcttc ttcaaaccat accagtcttg gaataggaaa
721 ccccttccaa ccgttgatga tggaaagatc aaaaaggtgg ccaacgcaat tctctgtgca
781 cttggatcac tattttcaaa accaatcaag gacctattgg gcaaacttaa accattgaac
841 ttgctgcact tgctcgcatc atgtgactgg acgtttgcgg gcatagtaga gacagtcatc
901 ctaatggcgg aacttttcgg catcttttgg acaccgccag atgtttccag tttcatagcc
961 tccctgatag gtgattttga attgcaaggg cctgaggatc tggctgtgga gcttgtaccc
1021 gtggtcatgg gtggcatagg aatggttctc ggctttactg ctgagaagat aggccgcatg
1081 ctatcgtccg ctgcatcaac actacgggcg tgcaaagact tggggaatta tgctcttgac
1141 atattgaaac tggttatgaa gtggttcttc ccaaagaaag aagagaaagc cgagatggaa
1201 accctaaggg cgattgagga tgccgtcctg gacatggaag ctataggaaa taaccatctc
1261 acaaccctcc tcaaggacaa ggatagcctc acggctttca tgaagactct agatctggaa
1321 gaagagaagg cgaggaaact gtccaccaaa tcatcctcgc cagacattgt cggcaccatt
1381 aatgccatac tggctagaat agctgctgcc aggtccctct tgcacaaggc taaagaagaa
1441 atgttcagca ggatcagacc cgtggttgtc atgatctcgg gtagacctgg cattggcaaa
1501 acccacatgg caagacactt ggctaagagt atcgccaaca ccatgagcgg cgaccagaga
1561 gtggggctcg tcccacgcaa cggggttgat cattgggacg cctacagggg agagagggtg
1621 gttttatggg atgattatgg catgggaaac cctgtcaaag atgccctaac actgcaagag
1681 ttggccgaca cctgcccagt aactctaaac tgtgatagga ttgagaacaa ggggaagatg
1741 tttgacagtg atgtcatcat aatcacgacc aatttggtca atccagcgcc cctcgattat
1801 gtaaacttcg aggcgtgctc cagaagggtc gactttctgg tctatgcaga gtcaccagaa
1861 attgagaagg ttaagagaga cttccccggc caacccgaca tgtggaagga ccattttaag
1921 ccagactttt cccacataaa actgactcta gccccacagg gtggatttga caagaatggc
1981 aacaccccgc atggtaaggg caccatgcga tccctaaccc aggggtccct gactgcaagg
2041 gttgcaggtc ttgttcatga gaggagagac gagtttcagc tccaggggaa cgaccttcaa
2101 acatataact ttgatactaa cagagtctct gcatttagga agctggccgc agacaacaag
2161 tatgggatca tggagactat gagagtgggc acagcgctta agagtgtcaa gaccttggaa
2221 gatctgaaag ttgccctgag ggatgtgaag ttcaatgagt gtgagataat ttacagaaac
2281 tccaaatacc gagtctcttc caatggtaaa ggttctgtct ctgttgacaa agttgaggac
2341 caaacatccc agaccgcaaa cgaagtgggt gcagcactcc ttagactcag acaggcaaga
2401 gccagatact atgtcagctg cttccaagac ctcgtttaca ctctaataca ggtcgccgga
2461 gcatcattcg ttgtcaacag gatctctaaa agattctgct gggagagatg ggtcaaacca
2521 accgagaccc aggaaacgag tgaatccgaa aaggaagtgg cccaaggcag atgggagatt
2581 gagcccaagg acacagaacc agaaggtaag aaaggtaaga acaagaaagg aagaggtaag
2641 aaacacacag ctttctccag taaaggcctg agtgatgagg agtatgacga gttcaagaga
2701 atcagagaag aaaggaacgg aaaatactcc attgaggaat acctgcaaga ccgggatcgc
2761 tactatgagg aagtggcagt tgcccgggcg acagaggagg acttctgtga agaggaggag
2821 gccaagataa gacaaagaat ctttcgcccc acaaagaaac agaggaagga agaaaggggg
2881 gtgcttggtt tggttactgg ctcagacatc aggaagagaa gaccagacga ttttcaaccg
2941 aagggtaacc tgtgggcaga cgacaccagg agtgtggact acaacgagag acttgatttc
3001 gaggctcccc cgagtgtctg gtcaagaata gtcccattgg gcactggctg gggcttctgg
3061 gtctcatcaa acctcctgat cacaacaacg cacgtcctac ctaaggggat taacgaactc
3121 tttggagttg agatcaaaca gattcagatt cataagtctg gagagttctg caggttcaga
3181 ttcccaagac caattagacc agatgtcaca gggctcgtgt tggaggaagg cgctccagaa
3241 ggcactgtct gctccatact cgtaaagaga cctacaggtg agatgatccc cctggcagtg
3301 aggatgggca cgcatgcatc catgaaaata cagggtagga ccgtcggtgg ccagatgggg
3361 atgctcctca caggggcaaa tgcgaagaac atggatcttg gcaccggtcc tggtgactgc
3421 ggttgccctt acatctacaa acgtggcaat gatatagttg tcgcgggtgt ccataccgca
3481 gcagcccggg gaggcaacac tgtcatatgt gccactcaag ggcaagatgg ggaagcagtc
3541 cttgagggaa atgagaacct tggcacttac tgcggtgctc caatcttggg tccaggcaag
3601 gcgcccaaac ttagcacgaa gaccaagttc tggcgttcat caccagacgc tttgccgcca
3661 ggcacttatg agcctgccta cttgggaggt aaggacccta gagtggaaaa aggaccatcc
3721 ctgcagcaag tcatgaggga ccagctaaaa cctttcacag aacccagggg caagccacct
3781 agacctgcag tcttagaaga agccaaaaag acagtgatga atgttctaga gcaaatcatt
3841 gaccctgcta aaccgtggac ctattcccaa gcatgtgcct cactggacaa gaccacttcc
3901 agtggtagcc cccatcatgt caggaaaaat gaccattgga atggggaatc cttcactggc
3961 cccctcgcag accaagcatc caaagccaac ctcatgtacg agcaggccaa acatgtgcag
4021 cccgtgtaca cggccgcact taaagatgaa ctagtcaaaa ctgataagat ctacaagaag
4081 ataaagaaaa ggctcttatg ggggtcggat cttggtacaa tgatcaggtg tgccagggcc
4141 tttggcggtc tcatggatag catgaaggca agctgcatag ccctcccatg tagggtagga
4201 atgaacatga atgaagatgg ccccatcata tttgacaagc attctaagta taggtaccat
4261 tatgatgctg actattccag gtgggactca acccagcaaa ggagcattct ctcggccgct
4321 atggaagtga tggtgcggtt ctctgctgaa ccagagctgg cacaagtggt tgcagaggac
4381 ctcctggcac ccagccaact agatgttggc gatttcgtca tctcagtcca ggagggtctg
4441 ccatcagggg tcccatgcac atcacaatgg aactcaatag cacactggat cctaaccttg
4501 agtgcaatgg cagaagtatc gggtctctca ccagatgttg ttcaagccca ctcctgtttc
4561 tcattctacg gcgatgatga gatcgtcagc actgacatca accttgatcc catgaagttg
4621 acacagaagc tcagagagta tggcctggtc cccacccgac ctgacaaaac tgagggtccc
4681 ctcgtaataa ctgaagatct caccggccta acgttcctgc gtaggtcaat tgcacgggac
4741 ccagctgggt ggtttggaaa attggaccaa gactcaatcc tcagacagtt gtactggaca
4801 agaggcccca accatgagaa cccatatgag agcatggtcc ctcattccca gcgggccaca
4861 caacttatgg cccttctcgg agaggcttca ctgcatggtc ccaagtttta caagaaagtt
4921 agcaagatgg ttattaatga gatcaaaagt ggtggtctgg aattctatgt gcccagacaa
4981 gaggccatgt tcagatggat gagattctct gacctcagca catgggaggg cgatcgcaat
5041 cttgctcccg agggtgtgaa tgaagatggc gtcgaatgac gctgctccat cgaatgatgg
5101 tgctgccaac ctcgtaccag aggccaccaa tgaggttatg gcacttgagc cggtggtggg
5161 agcctcaatt gctgctcctg tcgtcggcca acaaaatata attgacccct ggattagaga
5221 aaattttgtt caggcaccac agggtgagtt tactgtttca ccaaggaact cacctggtga
5281 gatgcttcta aatcttgaat taggccctga gctcaaccct tatctgagtc acttgtcccg
5341 catgtataac ggttatgctg gtggtatgca ggttcaggtg gtcctagctg ggaatgcgtt
5401 cacagctggt aaaatcatct ttgccgccgt cccaccacat ttccctgttg agaacattag
5461 tgcagcccaa atcacaatgt gcccccatgt aattgttgat gtgagacagc ttgagccagt
5521 gcttttgccc ctccctgaca taaggaatag attctttcat tataatcagg aaaatacccc
5581 ccggatgaga cttgtggcta tgttgtatac accccttaga gcgaattctg gtgaggatgt
5641 gtttacggtg tcttgcagag ttctgacccg ccctgccccc gactttgagt tcacgttttt
5701 ggtgccacca actgtggagt caaagactaa gccctttaca ctccctattc tgactcttgg
5761 agagctgtcc aactccagat tccccgctcc gatagacatg ttgtacactg accccaatga
5821 ggcaattgtg gtgcaaccac aaaatggcag gtgcactcta gatggaacac ttcaagggac
5881 cacccaactg gtacccaccc aaatttgctc cttcaggggc acgctaatta gccagacgtc
5941 gaggtctgca gattcaacag attcagcccc acgagcgagg aaccaccctc tccacgttca
6001 gctgaagaac ctcgatggga caccatatga cccaacagat gaggtgccag cagttttggg
6061 tgccatagat ttcaaaggaa ctgtgtttgg ggtcgctagc caaagaaaca ccacagggaa
6121 ctctatagga gcgacccgcg cccatgaagt gcacatagac accacaaacc ctagatacac
6181 cccaaagctt ggctctgtgt tgatgtattc tgaatctagt gattttgatg atggacaacc
6241 cacccgcttt acccccattg gtatgggagc cgatgattgg caccaatggg aattgcccga
6301 atattctggc cacctcactc ttaatatgag tttggcccct gcagttgccc ctgctttccc
6361 tggtgagcgc attctcttct tcagatcagt ggtgccgtct gctggtggct atggatcagg
6421 tcacatagat tgcctcatcc cacaggagtg ggttcagcat ttctaccagg aggccgctcc
6481 atcacagtcc gcggtggctc ttatcagata tgtcaaccct gacactggaa gaaacatctt
6541 tgaggcaaaa ctgcatagag aagggttcat cactgtggca aattctggaa acaaccccat
6601 agttgtgccc ccaaatggtt acttcaggtt tgaggcctgg gtcaatcaat tctacacact
6661 cacccccatg ggaactggac aggggcgcag aagagttcaa taatggcagg agctttctta
6721 gctggattgg caggtgatgc cataacaagt ggtgtcgggt ccctaatcaa tgctggggcc
6781 aatgcaatta accaaaaggt agaatatgac tttaataaac agctccaatt ggcatccttc
6841 aaacatgaca aagagatgtt gcaatcacaa gtactggcca ctaaacagct ccagcaggag
6901 atgatgaaca taaggcaagg ggtcttgtcc gctggcggct tttcccctac agatgccgcg
6961 agaggtgctg tgaacgcgcc gatgacaaaa attttggatt ggaatggaac aaggtacttt
7021 gccccaaata gtatgaagac aaccagttat tcgggccagt tttccagcaa ccctgtgcat
7081 aggcaaccta ctttaccccg ttctgaaccc ccaaaaatta aggttaatag tgattctgct
7141 agtgtgtata gttctgcatc tactgctcct tcacaatcaa ctcactcaac ggctttgact
7201 gcggggtcta gctcatctag gacaacatcc tcttctgcag tagcttccac cctatctagg
7261 actagtgact gggtgagagg acaaaatgaa aggcttagcc cgtttatgga tggtgctctc
7321 caaacaactt ttgtcacacc accatcgagc aaagcttcat catatgggtc ggtctcaacc
7381 gttcccaaag ctgttttgga ctcctggact cctatgttca atacccatag gcagcctctc
7441 ttcgctcatg tgcgcaggcg aggggagtca cagatttagt gaaaagattg attaggtttt
7501 ctttctttct tcttttcctt ttctttcttt taaaaaaaaa aaaaaaaaaa aaaaaaaaa
//