Typing tool
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Typing tool
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Complete norovirus genomes
| LC373450 | GII.6 | |
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| GII.P7 |
ORF1: 1..5084
ORF2: 5065..6708
ORF3: 6708..7484
LOCUS LC373450 7527 bp RNA linear VRL 07-DEC-2023
DEFINITION Norovirus GII NoV/Hu/JP/2013/GII.P7-GII.6/KA-57 POL, VP1, VP2 genes
for nonstructural polyprotein, capsid protein VP1, capsid protein
VP2, partial and complete cds.
ACCESSION LC373450
VERSION LC373450.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in Japan
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7527)
AUTHORS Doan,Y.H., Katayama,K., Kimura and H.
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2018) Contact:Yen Hai Doan National Institute of
Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
Japan
FEATURES Location/Qualifiers
source 1..7527
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="NoV/Hu/JP/2013/GII.P7-GII.6/KA-57"
/db_xref="taxon:122929"
/country="Japan:Kanagawa"
/collection_date="2013"
/note="genotype: GII.P7-GII.6"
gene <1..5084
/gene="POL"
CDS <1..5084
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBD06037.1"
/translation="SNDATTAFGSRNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLGA
VPKGTKAPSSDQHCPSVKIGAKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQNE
HENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAIS
LATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDT
WLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGK
LKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGPED
LAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFP
KKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLST
KSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHL
AKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTC
PVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEK
VKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARV
AGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTL
EDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLR
QARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEVAQ
GRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEE
YLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIR
KRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITT
THVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSIL
VKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYI
YKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPK
LSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPR
PAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFT
GPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRC
ARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRS
ILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSI
AHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVP
TRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPY
ESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWM
RFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5065..6708
/gene="VP1"
CDS 5065..6708
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBD06038.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRARNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESIDFDDG
QPTRFTPIGMGTDDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6708..7484
/gene="VP2"
CDS 6708..7484
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBD06039.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 cgtctaacga cgctaccact gcctttggca gccgaaactc tgtcaatgac agtatcaaca
61 ccgccccttc taataaagaa gaggttggtg cattctccaa catcaaagtt ggttttaaga
121 aaatgctggg tgccgttccc aaggggacca aagcacccag tagtgatcag cactgcccct
181 cagttaagat cggggccaag acgttaacag ttccccctga gcccccaaat ggtgaagaca
241 ccgtgcagtt tgatgcgaag tcggaaactg tacgcgggtt accagacttg acaacggtgc
301 agaatgagca cgaaaacaca ccatacactg tccccccatt gagtgaaagg gagcacagac
361 cagctactga accgcttcct ggcacaatac tggagatgtg ggatggtgaa ttctaccatt
421 actctgtgta cgtcagcggt ggcaaagccc taggggttca caagccccct gcagcgataa
481 gcctcgcgac gatagagctc acacccatat ctctttattg gaggcccgtt tacaccccca
541 actatctggt ctgcccagac acgttgaagg gccttgctgg tgagaagttc ccctacacgg
601 ccttcagcaa caactgttac aacttctgtt gctgggtact tgagctcaat gacacgtggc
661 ttagcaggag aagcatctct aggaccaccg gcttcttcaa accataccag tcttggaata
721 ggaaacccct tccaaccgtt gatgatggaa agatcaaaaa ggtggccaac gcaattctct
781 gtgcacttgg atcactgttt tcaaaaccaa tcaaggacct attgggcaaa cttaaaccat
841 tgaacttgct gcacttgctc gcatcatgtg actggacgtt tgcgggcata gtagagacag
901 tcatcctaat ggcggaactt ttcggcatct tttggacacc gccagatgtt tccagtttca
961 tagcctccct gataggtgat tttgaattgc aagggcctga ggatctggct gtggagcttg
1021 tacccgtggt catgggtggc ataggaatgg ttctcggctt taccgctgag aagataggcc
1081 gcatgctatc gtccgctgca tcaacactac gggcgtgcaa agacttgggg aattatgctc
1141 ttgacatatt gaaactggtt atgaagtggt tcttcccaaa gaaagaagag aaagccgaga
1201 tggaaaccct aagggcgatt gaggatgccg tcctggacat ggaagctata ggaaataacc
1261 atctcacaac cctcctcaag gacaaggata gcctcacggc tttcatgaag actctagatc
1321 tagaagaaga gaaggcgagg aaactatcca ccaaatcatc ctcgccagac attgtcggca
1381 ccattaatgc catactggct agaatagctg ctgccaggtc cctcttgcac aaggctaaag
1441 aagaaatgtt cagcaggatc agacccgtgg ttgtcatgat ctcgggtaga cctggcattg
1501 gcaaaaccca catggcaaga cacttggcta agagtatcgc caacaccatg agcggcgacc
1561 agagagtggg gctcgtccca cgcaacgggg ttgatcattg ggacgcctac aggggagaga
1621 gggtggtttt atgggatgat tatggcatgg gaaaccctgt caaagatgcc ctaacactgc
1681 aagagctggc cgacacctgc ccagtaactc taaactgtga taggattgag aacaagggga
1741 agatgtttga cagtgatgtc atcataatca cgaccaattt agtcaaccca gcgcccctcg
1801 attatgtaaa cttcgaggcg tgctccagaa gggtcgactt tctggtctat gcagagtcac
1861 cagaaattga gaaggttaag agagacttcc ccggccaacc tgacatgtgg aaggaccatt
1921 ttaagccaga cttttcccac ataaaactga ctctagcccc acagggtgga tttgacaaga
1981 atggcaacac cccgcatggt aagggcacca tgcgatccct aacccagggg tccctgactg
2041 caagggttgc aggtcttgtt catgagagga gagacgagtt tcagctccag gggaacgacc
2101 ttcaaacata taactttgat accaacagag tctctgcatt taggaagctg gccgcggaca
2161 acaagtatgg gatcatggag actatgagag tgggcacagc gcttaagagt gtcaagacct
2221 tggaagatct gaaagttgca ctgagggatg tgaagttcaa tgagtgtgag ataatttaca
2281 gaaactccaa ataccgagtc tcttccaatg gtaaaggttc tgtctctgtt gacaaagttg
2341 aggaccaaac atcccagacc gcaaacgaag tgggtgcagc actccttaga ctcagacagg
2401 caagagccag atactatgtc agctgcttcc aagacctcgt ttacactcta atacaggtcg
2461 ccggagcatc attcgttgtc aacaggatct ctaaaagatt ctgctgggag agatgggtca
2521 aaccaaccga gacccaggaa acgagtgaat ccgaaaagga agtggcccaa ggcagatggg
2581 agattgagcc caaggacaca gagccagaag gtaagaaggg taagaacaag aaaggaagag
2641 gcaagaaaca cacagctttc tccagtaaag gcctgagtga tgaggagtat gacgagttca
2701 agagaatcag agaagaaagg aacggaaaat actccattga ggaatacctg caagaccggg
2761 atcgctacta tgaggaagtg gcagttgccc gggcgacaga ggaggacttc tgtgaagagg
2821 aggaggccaa gataagacaa agaatctttc gccccacaaa gaaacagagg aaggaagaaa
2881 ggggggttct tggtttggtt actggctcag acatcaggaa gagaagacca gacgattttc
2941 aaccgaaggg taacctgtgg gcagacgaca ccaggagtgt ggactacaac gagagacttg
3001 atttcgaggc tcccccgagt gtctggtcaa gaatagtccc attgggcact ggctggggct
3061 tctgggtctc atcaaacctc ctgatcacaa caacgcacgt cctacctaag gggattaatg
3121 aactctttgg agttgagatc aaacagattc agattcataa gtctggagag ttctgcaggt
3181 tcagattccc aagaccaatt aggccagatg tcacagggct cgtgttggag gaaggcgctc
3241 cagaaggcac tgtctgctcc atactcgtaa agagacctac aggtgagatg atccccctgg
3301 cagtgaggat gggcacgcat gcatccatga aaatacaggg taggaccgtc ggtggccaga
3361 tggggatgct cctcacaggg gcaaatgcga agaacatgga tcttggcacc ggtcctggtg
3421 actgcggttg cccttacatc tacaaacgtg gcaatgatat agttgtcgcg ggtgtccaca
3481 ccgcagcagc ccggggaggc aacactgtca tatgtgccac tcaagggcaa gatggggaag
3541 cagtccttga gggaaatgag aaccttggca cttactgcgg tgctccaatc ttgggtccag
3601 gcaaggcgcc caaacttagc acgaagacca agttctggcg ttcatcacca gacgctttgc
3661 cgccaggcac ttatgagcct gcctacttgg gaggtaagga ccctagagtg gaaaaaggac
3721 catccctgca gcaagtcatg agggaccagc taaaaccttt cacagaaccc aggggcaagc
3781 cacctagacc tgcagtctta gaagaagcca aaaagacagt gatgaatgtt ctagagcaaa
3841 ccattgaccc tgctaaaccg tggacctatt cccaagcatg tgcctcactg gacaagacca
3901 cttccagtgg tagcccccat catgtcagga aaaatgatca ttggaatggg gaatccttca
3961 ctggccccct cgcagaccaa gcatccaaag ccaacctcat gtacgagcag gccaaacatg
4021 tgcagcccgt gtacacggcc gcacttaaag atgaactagt caaaactgat aagatctaca
4081 agaagataaa gaaaaggctc ttatgggggt cggatcttgg tacaatgatc aggtgtgcca
4141 gggcctttgg cggtctcatg gatagcatga aggcaagctg catagccctc ccatgtaggg
4201 taggaatgaa catgaatgaa gatggcccca tcatatttga caagcattct aagtataggt
4261 accattatga tgctgactat tccaggtggg actcaaccca gcaaaggagc attctctcgg
4321 ccgctatgga agtgatggtg cggttctctg ctgaaccaga gctggcacaa gtggttgcag
4381 aggacctcct ggcacccagc caactagatg ttggcgattt cgtcatctca gtccaggagg
4441 gtctgccatc aggggtccca tgcacatcac aatggaactc aatagcacac tggatcctaa
4501 ccttgagtgc aatggcagaa gtatcgggtc tctcaccaga tgttgttcaa gcccactcct
4561 gtttctcatt ctacggtgat gatgagatcg tcagcactga catcaacctt gatcccatga
4621 agttgacaca gaagctcaga gagtatggcc tggtccccac ccgacctgac aaaactgagg
4681 gtcccctcgt aataactgaa gatctcaccg gcctaacgtt cctgcgtagg tcaattgcac
4741 gggacccagc tgggtggttt ggaaaattgg accaagactc aatcctcaga cagttgtact
4801 ggacaagagg ccccaaccat gagaacccat atgagagcat ggtccctcat tcccagcggg
4861 ccacacagct tatggccctt ctcggagagg cttcactgca tggtccccag ttttacaaga
4921 aagttagcaa gatggttatt aatgagatca aaagtggtgg tctggaattc tatgtgccca
4981 gacaagaggc catgttcaga tggatgagat tctctgacct cagcacatgg gagggcgatc
5041 gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgctgc tccatcgaat
5101 gatggtgctg ccaacctcgt accagaggcc accaatgagg ttatggcact tgagccggtg
5161 gtgggagcct caattgctgc tcctgtcgtc ggccaacaaa atataattga cccctggatt
5221 agagaaaatt ttgttcaggc accacagggt gagtttactg tttcaccaag gaactcacct
5281 ggtgagatgc ttctaaatct tgaattaggc cctgagctca acccttatct gagtcacttg
5341 tcccgcatgt ataacggcta tgctggtggt atgcaggttc aggtggtcct agctgggaat
5401 gcgttcacag ctggtaaaat catctttgcc gccgtcccac cacatttccc tgttgagaac
5461 attagtgcag cccaaatcac aatgtgcccc catgtaattg ttgatgtaag acagcttgag
5521 ccagtgcttt tgcccctccc tgacataagg aatagattct ttcattataa tcaggaaaat
5581 accccccgga tgagacttgt ggctatgttg tatacacccc ttagagcaaa ttctggtgag
5641 gatgtgttta cggtgtcttg cagagttctg acccgccctg cccccgactt tgagttcacg
5701 tttttggtgc caccaactgt ggagtcaaag actaagccct ttacactccc tattctgact
5761 cttggagagc tgtccaactc cagattcccc gctccgatag acatgttgta cactgacccc
5821 aatgaggcaa ttgtggtgca accacaaaat ggcaggtgca ctctagatgg aacacttcaa
5881 gggaccaccc aactggtacc cacccaaatt tgctccttca ggggcacgtt aattagccag
5941 acgtcgaggt ctgcagattc aacagattca gccccacgag cgaggaacca ccctctccac
6001 gttcagctga agaacctcga tgggacacca tatgacccaa cagatgaggt gccagcagtt
6061 ttgggtgcca tagatttcaa aggaactgtg tttggggtcg ctagccaaag aaacaccaca
6121 gggaactcta taggagcaac ccgcgcccat gaagtgcaca tagacaccac aaaccctaga
6181 tacaccccaa agcttggctc tgtgttgatg tattctgaat ctattgattt tgatgatgga
6241 caacccaccc gctttacccc cattggtatg ggaaccgatg attggcacca atgggaattg
6301 cccgaatatt ctggtcacct cactcttaat atgaatttgg cccccgcagt tgcccctgct
6361 ttccctggtg agcgcattct cttcttcaga tcagtggtgc cgtctgctgg tggctatgga
6421 tcaggtcaca tagattgcct catcccacag gagtgggttc agcatttcta ccaggaggcc
6481 gctccatcac agtccgcggt ggctcttatc agatatgtca accctgacac tggaagaaac
6541 atctttgagg caaaactgca tagagaaggg ttcatcactg tggcaaattc tggaaacaac
6601 cccatagttg tgcccccaaa tggttacttc aggtttgagg cctgggtcaa tcaattctac
6661 acactcaccc ccatgggaac tggacagggg cgcagaagag ttcaataatg gcaggagctt
6721 tcttagctgg attggcaggt gacgccataa caagtggtgt cgggtcccta atcaatgctg
6781 gggccaatgc aattaaccaa aaggtagaat atgactttaa taaacagctc caattggcat
6841 ccttcaaaca tgacaaagag atgttgcaat cacaagtact ggccactaaa cagctccagc
6901 aggagatgat gaacataagg caaggggtct tgtccgctgg cggcttttcc cctacagatg
6961 ccgcgagagg tgctgtgaac gcgccgatga caaaaatttt ggattggaat ggaacaaggt
7021 actttgcccc aaatagtatg aagacaacca gttattcggg ccagttttcc agcaaccctg
7081 tgcataggca acctacttta ccccgttctg aacccccaaa aattaaggtt aatagtgatt
7141 ctgctagtgt gtatagttct gcatctactg ctccttcaca atcaactcac tcaacggctt
7201 tgactgcggg gtctagctca tctaggacaa catcctcttc tgcagtagct tccaccctat
7261 ctaggactag tgactgggtg agaggacaaa atgaaaggct tagcccgttt atggatggtg
7321 ctctccaaac aacttttgtc acaccaccat cgagcaaagc ttcatcatat gggtcggtct
7381 caaccgttcc caaagctgtt ttggactcct ggactcctat gttcaatacc cataggcagc
7441 ctctcttcgc tcatgtgcgc aggcgagggg agtcacagat ttagtgaaaa gattgattag
7501 gtcatctttc tttcttcttt tcctttt
//