Typing tool
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Typing tool
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Complete norovirus genomes
| LC373449 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5091
ORF2: 5072..6694
ORF3: 6694..7500
LOCUS LC373449 7536 bp RNA linear VRL 07-DEC-2023
DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.Pe-GII.4 Sydney_2012/TO-142 POL,
VP1, VP2 genes for nonstructural polyprotein, capsid protein VP1,
capsid protein VP2, partial and complete cds.
ACCESSION LC373449
VERSION LC373449.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Doan,Y.H.
TITLE Norovirus in Japan
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7536)
AUTHORS Doan,Y.H., Katayama,K., Kimura and H.
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2018) Contact:Yen Hai Doan National Institute of
Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
Japan
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="NoV/Hu/JP/2015/GII.Pe-GII.4 Sydney_2012/TO-142"
/db_xref="taxon:122929"
/country="Japan:Tochigi"
/collection_date="2015"
/note="genotye: GII.Pe-GII.4 Sydney_2012"
gene <1..5091
/gene="POL"
CDS <1..5091
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBD06034.1"
/translation="ASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQP
PPKETPPRPPRSPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETN
TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK
VELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMLSGRPGIGKTHLARELAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDL
KQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKP
KDDEEFIVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGS
EIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVA
TLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGS
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGE
SFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATM
IRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHE
DPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5072..6694
/gene="VP1"
CDS 5072..6694
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBD06035.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFETNQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6694..7500
/gene="VP2"
CDS 6694..7500
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBD06036.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gcgtctaacg acgcttccgc tgccgctgtt gccaacagca acaacgacat cgcaaaatct
61 tcaagtgacg gtgtgttttc taacatggct gtcactttta agcgggccct cggggcgcgg
121 cctaaacagc cgcccccgaa ggaaacacca cccagacccc cgcgatcacc cacaccagaa
181 ttggtcaaaa agatccctcc tcccccaccc aacggggagg atgaactggt ggtctcttac
241 agcgccaaag atggcgtttc cggactgcct gagctcacca ctgtcagaca accggaagaa
301 accaacacgg cgttcagtgt ccccccactc aaccaaaggg agagcaggga cgccaaggag
361 ccactaactg gaacaatcat tgaaatgtgg gatggagaaa tctaccatta cggcctgtac
421 gtggaacgag gtcttatact tggtgtgcac aagccaccgg cagccattag ccttgccaag
481 gtcgagctag caccgctctc tttgttctgg agacctgtat acacccccca gtatctcatc
541 tctccagaca ctcttaggag attacatgga gagtcattcc cctacactgc atttgacaac
601 aattgctacg ccttttgttg ttgggtatta gacctaaacg actcatggct aagcaggaga
661 atgattcaga gaacaacagg tttcttcagg ccgtaccagg attggaacag gaaacccctc
721 cccactatgg atgattccaa attaaagaag gtagccaaca tattcttgtg cactttgtct
781 tcactattca ccagacccat taaggacata atagggaagt tgaaacctct taacatcctt
841 aacattctgg ctacatgtga ttggaccttc gcaggcatag tggaatcctt aatactcttg
901 gcagaactct ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat cgcccccttg
961 ctaggtgatt atgaactgca aggacctgag gaccttgcag tggaactggt cccaatagtg
1021 atggggggga taggtttggt gctaggattt accaaagaga aaatcggaaa gatgctatcg
1081 tccgctgcat ccactttaag agcttgtaaa gaccttggtg catacggact ggaaatctta
1141 aaattggtca tgaagtggtt cttcccaaag aaagaggaag caaatgaact ggctatggtg
1201 agatccatcg aggatgcagt actagacctc gaggcaattg agaacaacca catgaccacc
1261 ctgctcaaag acaaagacag cttggcaacc tacatgagaa cccttgacct tgaggaggag
1321 aaagccagaa aactctcaac caaatctgct tcacccgata ttgtgggcac aatcaactct
1381 cttctggcaa gaatcgctgc tgcacgctcc ctagtgcatc gggcgaaaga agagctctcc
1441 agcaggccga gacctgtcgt tgtgatgtta tcgggaagac cagggatagg gaaaactcac
1501 cttgccaggg agctggccaa gaagatcgcg gcctccctca caggggacca gcgtgtgggt
1561 cttatcccac gcaatggtgt cgaccactgg gacgcataca agggcgaaag agttgtccta
1621 tgggacgact atggaatgag caaccccatc catgatgccc tcaggttgca ggagcttgct
1681 gacacttgcc ccctcacact aaattgtgac agaattgaga acaaagggaa agtctttgac
1741 agtgatgcca taattatcac caccaatctg gccaacccag caccactgga ttatgtcaac
1801 tttgaagcgt gctcgagacg cattgatttc ctcgtgtacg cagaagcccc tgaggtggag
1861 aaggcaaagc gcgacttccc aggtcaacct gacatgtgga agaacgcttt cagtcctgac
1921 ttctcacaca taaaactgtc attggctcca cagggtggtt ttgacaagaa cggcaacacc
1981 ccgcatggaa aaggggtcat gaagaccctc accactggct ccctcatcgc ccgagcatca
2041 gggttactcc atgagaggct agatgaatat gaactgcaag gcccagccct caccactttc
2101 aactttgacc gcaacaagat acttgctttt agacagcttg ctgctgaaaa caagtatggg
2161 ctgatggaca caatgagagt tggaaaacag ctcaaggatg tcaagaccat gtcagacctc
2221 aaacaagcac tcaagaacat cgcgatcaag aagtgccaga tagtgtacaa tggtggcacc
2281 tacacacttg aggctgatgg caagggtagt gtgaaagttg acaaagtaca aagtgccact
2341 gtgcagacca acaatgaact agccggtgcc ctacaccacc taaggtgcgc tagaatcaga
2401 tactatgtta agtgcgtcca ggaggcactg tattccatca tccaaatcgc tggggctgca
2461 ttcgtcacca cgcgcatcgc taagcgcatg aatatacaga atctctggtc caagccacag
2521 gtggaagaca cagaagagat ggccaacaaa gatggttgcc taaaacccaa agatgatgag
2581 gagtttatcg tctcatccga cgacatcaaa actgagggca agaaagggaa gaacaagtcc
2641 ggccgtggca agaagcacac agccttttca agcaaagggc tcagtgatga ggagtacgat
2701 gagtacaaga gaatcagaga agaaaggaat ggtaagtact ccatagaaga gtaccttcag
2761 gacagagaca ggtactacga ggaggtggcc attgccaggg caaccgaaga ggacttctgt
2821 gaagaagaag aggccaaaat ccggcagaga attttcagac caacaaggaa acaacgcaaa
2881 gaagagaggg cctctctcgg cttggtcaca ggctctgaaa tcaggaagag aaacccagaa
2941 gacttcaaac ccaagggaaa gctgtgggct gatgatgaca gaagtgttga ctacaatgag
3001 aaactcaact ttgaggcccc accaagcatc tggtcgcgga tagtcaactt tggttcaggc
3061 tggggcttct gggtctcccc cagtctgttt ataacatcaa cccatgtcat accccaaggt
3121 gcaaaagagt tcttcggagt ccctatcaag caaatccaga tacacaaatc aggtgaattc
3181 tgccggttga gattcccaaa gccgatcaga actgatgtga cgggcatgat tctagaagaa
3241 ggtgcgcccg aggggaccgt ggccacactg ctcatcaaga gaccaactgg agagctcatg
3301 cctctggcag ccagaatggg gacccatgca accatgaaaa ttcaggggcg cacagttgga
3361 gggcaaatgg gtatgctcct gacaggatcc aacgccaaga gtatggacct aggcacaaca
3421 ccaggcgact gcggctgccc ctacatctac aagaggggga atgactacgt ggtcatagga
3481 gtccatacgg ccgctgcccg tggaggaaac actgtcatat gtgccaccca ggggagtgag
3541 ggagaagcca cacttgaagg aggtgacagt aaagggacat actgtggcgc accaatcttg
3601 ggcccaggga gcgctccaaa gctcagtacc aagactaagt tttggagatc atccacaaca
3661 ccactcccac ctggcaccta cgaaccagcc tacctcggtg gcaaagaccc tagagtcaaa
3721 ggtggccctt cattgcaaca agttatgagg gaccagctga agccattcac agaacccaga
3781 ggcaaaccac caagaccaaa tgtgttggaa gctgccaaga aaaccatcat caatgtcctt
3841 gagcaaacaa ttgatccacc ccaaaaatgg tcatttgcgc aagcttgcgc atcccttgac
3901 aaaaccacct ccagcggcca cccgcaccac atgcggaaaa acgactgttg gaatggggag
3961 tccttcacag gaaaattggc tgatcaagcc tccaaggcca acctaatgtt tgaagaggga
4021 aagaacatga ctccagtcta cacaggtgca cttaaagatg agttggtaaa gaccgataaa
4081 gtttatggta aggtcaagaa gaggcttctg tggggttcag atctggcgac catgatacgg
4141 tgcgcccgag cttttggagg ccttatggat gaactcaagg cacactgtgt cacacttcct
4201 gtcagagttg gtatgaacat gaatgaggat ggccccatca tctttgagaa gcactccaga
4261 tatagatatc attatgatgc tgactattcc cggtgggact caacacaaca aagggatgtg
4321 ctagcagcag cactagaaat catggttaag ttctctccag aaccacacct ggcccagata
4381 gttgcagaag acctcctttc ccctagcgta atggatgtag gtgactttca aatatcaata
4441 agtgagggtc tcccctctgg ggtaccttgt acctcccagt ggaattccat cgcccactgg
4501 ctcctcactc tgtgtgcact ctctgaagtc acggacctgt cccctgatat cattcaggcc
4561 aactcccttt tctccttcta tggtgatgat gagattgtaa gcacagacat aaagttggac
4621 ccagagaagc tgacagcaaa actcaaggag tacgggctga aaccaacccg ccccgacaaa
4681 actgaaggac cccttgttat ctctgaagac ctggatggcc tgacattcct ccggagaact
4741 gtgacccgtg atccagctgg ctggtttgga aaattggaac agagttcaat tctcaggcaa
4801 atgtactgga ccaggggtcc caaccatgaa gacccatttg aaacaatgat accacactcc
4861 caaagaccca tacaattgat gtccttgctg ggcgaggctg cactccacgg cccggcattc
4921 tatagcaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat ggatttttac
4981 gtgcccagac aagagccaat gttcagatgg atgagattct cagatctgag cacgtgggag
5041 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgagtg acgccaaccc
5101 atctgatggg tccgcagcca acctcgtccc agaggtcaac aatgaggtta tggctctgga
5161 gcccgttgtt ggtgccgcta ttgcggcacc tgtagcgggc caacaaaatg taattgaccc
5221 ctggattaga aataattttg tacaagcccc tggtggagag tttacagtat cccctagaaa
5281 cgctccaggt gaaatactat ggagcgcgcc cttgggccct gatctaaacc cctacctatc
5341 ccatttggcc agaatgtaca atggttatgc aggtggtttt gaagtgcagg taattctcgc
5401 ggggaacgcg ttcaccgccg ggaaggtcat atttgcagca gtcccaccaa attttccaac
5461 tgaaggcttg agccccagcc aggtcactat gttcccccat atagtagtag atgttaggca
5521 actagaacct gtgttgattc ccttacccga tgttaggaat aatttctacc attacaatca
5581 atcaaatgac cccaccatta agttgatagc aatgttgtat acaccactta gggctaataa
5641 tgctggggat gatgtcttca cagtttcttg ccgagttctc acgagaccat cccccgattt
5701 tgatttcata tttctagtgc cacccacagt tgagtcaaga actaaaccat tctctgtccc
5761 agttttaact gttgaggaga tgaccaattc aagattcccc attcctttgg aaaagttgtt
5821 cacgggtccc agcagtgcct ttgttgtcca accacaaaac ggtaggtgca cgactgatgg
5881 cgtgctccta ggcaccaccc aactgtctcc tgtcaacatc tgcaccttca gaggagatgt
5941 cacccatatc acaggtagtc gtaactacac gatgaatttg gcttctcaaa attggaacaa
6001 ttatgaccca acagaagaaa tcccagcccc tctaggaact ccagattttg tggggaagat
6061 tcaaggcgtg ctcacccaaa ccacaaggac agatggctca acacgcggcc acaaagctac
6121 agtgtacact gggagcgccg attttgctcc aaaactgggt agagttcaat ttgaaactga
6181 cacagaccat gactttgaaa ctaaccaaaa cacaaagttc accccagttg gtgtcatcca
6241 agatggtggc accacccacc gaaatgaacc ccaacagtgg gtgctcccaa gttactcagg
6301 cagaaatacc cctaatgtgc atctggcccc cgctgtagcc cccacttttc cgggtgagca
6361 acttctattc ttcagatcca ccatgcccgg atgcagcggg taccccaaca tggatttgga
6421 ctgtctgctc ccccaggaat gggtgcagta cttctaccaa gaggcagccc cagcacaatc
6481 tgatgtggct ctgctaagat ttgtgaatcc agacacaggt agggttttgt ttgagtgtaa
6541 gcttcataaa tcaggctatg ttacagtggc tcacactggt caacatgatt tggttatccc
6601 ccccaatggt tattttaggt ttgattcctg ggtcaaccag ttttacacgc ttgcccccat
6661 gggaaatgga acggggcgta gacgtgcact ataatggctg gagctttctt tgctggattg
6721 gcatctgatg tccttggctc tggacttggt tcccttatca atgctggggc tggggccatc
6781 aaccaaaaag ttgagtttga aaataacaga aaattgcaac aagcatcctt ccaatttagc
6841 agcaatctac aacaggcttc ctttcaacat gacaaagaga tgctccaagc acaaattgag
6901 gccaccaaaa ggctacaaca ggaaatgatg aaagttaagc aggcaatgct cctagagggt
6961 gggttctctg agacagatgc agcccgcggg gcaatcaacg cccccatgac aaaagctttg
7021 gactggagcg ggacaaggta ctgggctccc gatgctagga ctacaacata caatgcaggc
7081 cgcttttcca cccctcaacc atcgggggca ctgccaggaa gagctaatct tagggatgct
7141 gtccctgctc ggggttcctc cagcaagtct tctaattctt ctactgctac ttctgtgtac
7201 tcaaatcaaa ctacttcaac gagacttggt tctacagctg gttctggcac cagtgtctcg
7261 agcttcccgt caactgcaag gactaggagc tgggttgagg atcaaagtag gaatttgtca
7321 cctttcatga ggggggccca caacatatcg tttgtcaccc caccatctag cagatcctct
7381 agccaaggca cagtctcaac cgtgcctaaa gagattttgg actcctggac tggcgctttc
7441 aacacgcgca ggcagccact cttcgctcac attcgtaagc gaggggagtc acgggcgtaa
7501 tgtgaaaaga caaaattgat tatctttctt ttcttt
//