Typing tool
|
Complete norovirus genomes
LC369251 | GII.17 | ||
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GII.P17 |
ORF1: 1..5098 ORF2: 5079..6695 ORF3: 6695..7474LOCUS LC369251 7539 bp RNA linear VRL 28-JUN-2023 DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/SA-164 genomic RNA, nearly complete genome. ACCESSION LC369251 VERSION LC369251.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y., Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N., Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R., Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N., Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and Kimura,H. TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017 JOURNAL Front Microbiol 10, 2189 (2019) PUBMED 31611853 REMARK DOI:10.3389/fmicb.2019.02189 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7539) AUTHORS Doan,Y.H., Katayama,K. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7539 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="NoV/Hu/JP/2015/GII.P17-GII.17/SA-164" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan:Saitama" /collection_date="2015" /note="genotype: GII.P17-GII.17" gene <1..5098 /gene="POL" CDS <1..5098 /gene="POL" /note="start codon is not identified" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BBD04725.1" /translation="SDDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARPKQP PPGETKQTQKPPRPPTPELVKRIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQPDA QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL AKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL RPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA KKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA KRDFPGQPDMWKDYYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD ELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHLRS ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGGCP KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC GCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5079..6695 /gene="VP1" CDS 5079..6695 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBD04726.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFGSNDNDFQLQPTKFTPVGIND DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6695..7474 /gene="VP2" CDS 6695..7474 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBD04727.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSPAPSSSSSSVYSMSTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 gtctgacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca aggagaaatc 61 ttcaagtgac agcttgtttt ctaacatgac tgttactttt aagaaagccc tcggggcgcg 121 gcctaaacaa ccgcccccgg gagaaacaaa acaaacacaa aaaccaccaa ggccaccgac 181 accggaattg gtgaagagaa tacccccacc cccacccaat ggcgaggatg aaccaaagat 241 agtgtataag gtgggagagg gtgtgtctgg gctgcccaac ctaacaactg tggcacagcc 301 tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag tcggcgaagc 361 taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg 421 gctgtatgtt gagcgggggc atgtactcgg agtacacaaa ccacctgccg caataagcct 481 cgccaaaatt gaattaacac cgctgtctct ctactggaga gtggtctaca ctcctcagta 541 tttgatagct ccagaaactc ttaagaactt gagtggagag actttcccat acacggcctt 601 tgacaacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact cctggcttag 661 caggagaatg atccaaagaa caactggatt cttcagaccg tatcaggatt ggaacagaaa 721 acccttacca accatggatg aaccgaaaat taagaaggcc gcgaatgctg ttctgtgcgc 781 tctctcctca ctcttcacta gacccattaa ggacatcatt ggaaaactta gaccactgaa 841 cattctcaat gtactggcaa cttgtgactg gacttttgca ggcatagtgg agtccatgat 901 ccttcttgct gaactctttg gggtgttctg gaccccccca gatgtgtctg cgatgattgc 961 tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc 1021 cgtggtaatg ggaggaatag gtttggtgtt aggattcacc aaggaaaaga tcggcaagat 1081 gctttcatca gctgcgacca cacttagggc ctgcaaggat ctaggatctt atggattgga 1141 gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta acgaactagc 1201 catggtgagg gccattgagg atgcagtcct ggatttggag gcaatagaaa acaatcacat 1261 gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc ttgacttgga 1321 agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat 1381 aaactcatta ttggcaagga tagcagccgc caggtcactg gtccacaagg ctaaggagga 1441 gctctcgagc agacagagac ctgttgttgt aatgatatca ggtagaccag gtataggaaa 1501 gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag gcgaccaaag 1561 gattggactg atacctagaa atggcgtcga ccattgggac gcctacaagg gagaaagggt 1621 ggttctgtgg gatgattatg gtatgagcaa ccctatacag gacgcactga ggctccaaga 1681 attggctgac acctgtcctc tgaccctgaa ttgtgacagg attgaaaaca aaggaaaagt 1741 gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac cactagacta 1801 tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag acgcacctga 1861 catcgagaag gctaagcgtg atttccctgg ccaaccagat atgtggaaag actattacag 1921 accagacttc acacacatta aacttcagct ggcaccacag ggaggttttg acaaaaatgg 1981 caacacccca catggcaaag gtgtggtgaa gtctctgacg attggttctc tgatcgccag 2041 ggcttctggc ttgctccacg agagaatgga tgaattcgag ctccagggct ctgacctgcc 2101 aaccttcaat tttgaccgca acaaagtcgc cgcctttaga caattagcag ctgaaaacaa 2161 atatggtctt atggacacac tgagggtcgg caaccaactg aaaagtgtca agaccctgga 2221 tgagctgaaa caggccataa agaacatcag tatcaagaag tgccagatag tgtataatgg 2281 atgcacctat accatggaat ctgatgggag gagcaaggtt gtagttgaaa aggtacaaaa 2341 cgcaacagtt caaaccaaca atgaacttgt aggggcactc caccacctga gatctgcaag 2401 gataagatac tatgttaaat gtttccaaga agccatttac tctctactcc aaattgctgg 2461 tgcagccttc gtcacctcac gcatcgtgag gcgcatgaac atctcaaacc tctggtcgaa 2521 gccacccatc gaggagggtg atgagcctga agacaaagga ggatgcccca agcccaggga 2581 tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga agggcaagaa 2641 caagtctggt cggggcaaga aacacacagc cttctcatcc aagggcctca gtgatgaaga 2701 gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa tagaggaata 2761 cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcca ctgaggagga 2821 cttctgtgaa gaggaggaga tcaaaatccg ccaaagaatc ttccgaccca ccaggaagca 2881 gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca gaaagaggaa 2941 tccagatgac tttaaaccaa aaggaaagtt gtgggctgat gacaacagga gcgtggatta 3001 caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag tcaactttgg 3061 cacaggctgg ggattttggg tttctccaag tctctttata acttcaacac acgtcatacc 3121 aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc acaaatctgg 3181 agaattttgc cgcttgcggt ttccaaagcc aatcagacca gacgtgagtg ggatgatctt 3241 ggaagagggt gcccctgaag gcactgttgt gtctattctc atcaaaagga caacagggga 3301 gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc aaggtagaac 3361 ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaagca tggatctagg 3421 cacaacgcca ggtgactgcg ggtgtccata catatacaaa aggggcaatg acttcgtggc 3481 cattggggtg cacactgcag cagcacgtgg aggcaacacg gtcatatgtg ccacacaggg 3541 aagtgaaggt gaagccactc ttgaaggagg tgacaacaag ggtacctatt gtggggcccc 3601 cattttggga cctggcaatg caccaaaatt gagcacaaaa acaaaattct ggagatcctc 3661 taacgcaccg cttcccccag gtacttatga accagcatac cttggtggaa gagacccgcg 3721 cgtgaaggga ggcccatctc tgcaacaagt tatgagagac caacttaaac cttttacaga 3781 gcccagaggg aagccaccaa acccaaatgt cctagagtca gcaaagaaga ctatcatcaa 3841 tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag cttgtgcatc 3901 cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg actattggag 3961 tggtgaatcc ttcacaggga aacttgcaga ccaggcttca aaagcaaatc tcatgtatga 4021 ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac 4081 tgacaaaatt tatggcaaga tcaagaaaag actcctgtgg ggttctgacc tctccaccat 4141 gattcgatgc gccagagcat ttggtggtct catggatgag ctcaaagcaa attgtatcac 4201 actccctatc agagttggta tgaatatgaa tgaagacggt cccataatat ttgagaaaca 4261 ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca cacaacagcg 4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagctggc 4381 acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat 4441 cgctatcaat gaaggcctac catctggcgt gccttgcacc tcacaatgga attctattgc 4501 ccactggtta ctcaccctgt gtgccctttc tgaagtgaca ggactaggtc ctgacatcat 4561 acaagccaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa 4621 attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac ccactcggcc 4681 cgacaaaact gaggggccgc tggtgattag tgaagacctg aatgggttga ctttcctccg 4741 ccgaacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa actccatcct 4801 caggcagttg tactggacaa gaggacccaa tcatgaagac cccagtgaga ccatgatacc 4861 acacgcacag agacctgtgc agctcatggc actactagga gaatcctccc tacatggacc 4921 ctcattttac agcaaggtta gcaaactggt catatctgaa cttaaagagg gaggaatgga 4981 tttttatgtg cccagacaag agtcaatgtt cagatggatg aggttctcag atctaagcac 5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg 5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaacaac gagacccttc 5161 ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa aacaacataa 5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac 5281 ccagaaactc ccctggagaa attttactaa acctagagtt gggccctgat ttgaaccctt 5341 atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa gttcaggttc 5401 tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc ccgccaaatt 5461 tcccagtgga attcttaagc ccagcccaga ttacaatgct cccacactta atagtagatg 5521 tcaggactct tgaaccaatt atgatcccac tccctgatgt taggaataca ttcttccatt 5581 ataacaacca acctaacagc cgcatgagat tagtggctat gctctacacc ccccttagat 5641 ctaatggctc aggcgatgat gtctttactg tctcttgtag ggttttgact aggcctactc 5701 ctgattttga gttcacttat ttagtgccac cttctgttga atctaagact aagccttttt 5761 ccttacctat tttaaccctt tctgagctca caaattcgag gttcccagtc cccatcgatt 5821 cgcttttcac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgcacac 5881 ttgatggtga gttacaaggc acaacccagt tgctcccatc tggcatctgt gcattcagag 5941 gacgggtgac agcagaaact gaccatcgtg acaagtggca catgcaactg caaaacctca 6001 atggcacaac atatgaccca actgatgatg tgccagcccc gctgggtaca cctgacttca 6061 agggcgtcgt gtttggggta gcaagccaaa gaaatgtggg taatgatgcg cctggctcaa 6121 ccagggccca tgaggcggtg atttcaacct atagccccca atttgtcccc aaattaggtt 6181 ctgtcaattt tggaagtaat gataatgatt tccaattgca gccgacaaaa ttcacaccag 6241 tgggcatcaa tgacgatggt gaccacccgt tcagacagtg ggaactacca gactattcag 6301 ggctgcttac cttgaatatg aacctcgccc ccccggttgc tccaaatttc cctggtgaac 6361 aattattatt cttcagatct tttgtgccat gctcaggagg ttataatcaa ggcattgtag 6421 attgtcttat tccccaagaa tggatccaac acttctatca ggaatcagcg ccctcccagt 6481 cagacgtggc cctaatcagg tatgttaacc ccgatacggg acgcacactg tttgaagcaa 6541 aattgcacag atctggctac attactgtgg ctcactctgg agactatcct cttgttgttc 6601 cggctaatgg atattttaga tttgattctt gggtaaatca gttttactca ctcgccccaa 6661 tgggaactgg gaatgggcga aggagggctc agtaatggct ggagctttca ttgcaggatt 6721 ggcaggcgac atgctcacgt catctgtggg ctccctggtg aacgcagggg caaacgccat 6781 caaccaaaag atagactttg aaaacaacaa acaactccag tctgcttcct ttcagcatga 6841 taaagagatg ctccaagcgc aggtgaaggc aaccaagcag ctgcaatctg aaatgatagc 6901 cctaaaacag ggggttttgg ccgcaggcgg cttttccccc actgatgcag caaggggagc 6961 cattggtgca cccatgacaa aggtgcttga ctggtctggt actcgatact gggcacccaa 7021 ttccacaaag acaactggtt attcgggaca attcacctct tcacctgtgc acatgcctag 7081 cccaaatgct ccacaatcaa aacctgcaaa gcctaggtct ccagctcctt cctcttcttc 7141 tagtagtgtc tatagtatgt ctactcaatc aactcattta acatctggct cttctagtaa 7201 tgcttcttct gcctctacaa aattgacaaa cttaagttct ggctcctctc aaaacagaac 7261 agcagagtgg gtgaaccaac agagaagtct tagccctttc atgagtggcg cactcaatat 7321 ctcacatgtc acgccaccct caagtagggc ttccagttct gggacggtct cgaccgtgcc 7381 caaggaagtt ttggactcct ggacgtctgc gtttaacaca cacagacagc cgctcttcgc 7441 acacctcaga gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg gctataatgt 7501 gatttctttt taaaatttgg taatttgtat cttttaaaa //