Typing tool
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Typing tool
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Complete norovirus genomes
| LC369251 | GII.17 | |
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| GII.P17 |
ORF1: 1..5098
ORF2: 5079..6695
ORF3: 6695..7474
LOCUS LC369251 7539 bp RNA linear VRL 28-JUN-2023
DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/SA-164 genomic RNA,
nearly complete genome.
ACCESSION LC369251
VERSION LC369251.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y.,
Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N.,
Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R.,
Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N.,
Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and
Kimura,H.
TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase
Regions of Human Norovirus GII.P17-GII.17 in 2013-2017
JOURNAL Front Microbiol 10, 2189 (2019)
PUBMED 31611853
REMARK DOI:10.3389/fmicb.2019.02189
REFERENCE 2 (bases 1 to 7539)
AUTHORS Doan,Y.H., Katayama,K. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of
Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
Japan
FEATURES Location/Qualifiers
source 1..7539
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="NoV/Hu/JP/2015/GII.P17-GII.17/SA-164"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan:Saitama"
/collection_date="2015"
/note="genotype: GII.P17-GII.17"
gene <1..5098
/gene="POL"
CDS <1..5098
/gene="POL"
/note="start codon is not identified"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBD04725.1"
/translation="SDDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARPKQP
PPGETKQTQKPPRPPTPELVKRIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQPDA
QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL
RPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDYYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHLRS
ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGGCP
KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5079..6695
/gene="VP1"
CDS 5079..6695
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBD04726.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFGSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6695..7474
/gene="VP2"
CDS 6695..7474
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBD04727.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSPAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtctgacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca aggagaaatc
61 ttcaagtgac agcttgtttt ctaacatgac tgttactttt aagaaagccc tcggggcgcg
121 gcctaaacaa ccgcccccgg gagaaacaaa acaaacacaa aaaccaccaa ggccaccgac
181 accggaattg gtgaagagaa tacccccacc cccacccaat ggcgaggatg aaccaaagat
241 agtgtataag gtgggagagg gtgtgtctgg gctgcccaac ctaacaactg tggcacagcc
301 tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag tcggcgaagc
361 taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg
421 gctgtatgtt gagcgggggc atgtactcgg agtacacaaa ccacctgccg caataagcct
481 cgccaaaatt gaattaacac cgctgtctct ctactggaga gtggtctaca ctcctcagta
541 tttgatagct ccagaaactc ttaagaactt gagtggagag actttcccat acacggcctt
601 tgacaacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact cctggcttag
661 caggagaatg atccaaagaa caactggatt cttcagaccg tatcaggatt ggaacagaaa
721 acccttacca accatggatg aaccgaaaat taagaaggcc gcgaatgctg ttctgtgcgc
781 tctctcctca ctcttcacta gacccattaa ggacatcatt ggaaaactta gaccactgaa
841 cattctcaat gtactggcaa cttgtgactg gacttttgca ggcatagtgg agtccatgat
901 ccttcttgct gaactctttg gggtgttctg gaccccccca gatgtgtctg cgatgattgc
961 tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc
1021 cgtggtaatg ggaggaatag gtttggtgtt aggattcacc aaggaaaaga tcggcaagat
1081 gctttcatca gctgcgacca cacttagggc ctgcaaggat ctaggatctt atggattgga
1141 gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta acgaactagc
1201 catggtgagg gccattgagg atgcagtcct ggatttggag gcaatagaaa acaatcacat
1261 gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc ttgacttgga
1321 agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat
1381 aaactcatta ttggcaagga tagcagccgc caggtcactg gtccacaagg ctaaggagga
1441 gctctcgagc agacagagac ctgttgttgt aatgatatca ggtagaccag gtataggaaa
1501 gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag gcgaccaaag
1561 gattggactg atacctagaa atggcgtcga ccattgggac gcctacaagg gagaaagggt
1621 ggttctgtgg gatgattatg gtatgagcaa ccctatacag gacgcactga ggctccaaga
1681 attggctgac acctgtcctc tgaccctgaa ttgtgacagg attgaaaaca aaggaaaagt
1741 gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac cactagacta
1801 tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag acgcacctga
1861 catcgagaag gctaagcgtg atttccctgg ccaaccagat atgtggaaag actattacag
1921 accagacttc acacacatta aacttcagct ggcaccacag ggaggttttg acaaaaatgg
1981 caacacccca catggcaaag gtgtggtgaa gtctctgacg attggttctc tgatcgccag
2041 ggcttctggc ttgctccacg agagaatgga tgaattcgag ctccagggct ctgacctgcc
2101 aaccttcaat tttgaccgca acaaagtcgc cgcctttaga caattagcag ctgaaaacaa
2161 atatggtctt atggacacac tgagggtcgg caaccaactg aaaagtgtca agaccctgga
2221 tgagctgaaa caggccataa agaacatcag tatcaagaag tgccagatag tgtataatgg
2281 atgcacctat accatggaat ctgatgggag gagcaaggtt gtagttgaaa aggtacaaaa
2341 cgcaacagtt caaaccaaca atgaacttgt aggggcactc caccacctga gatctgcaag
2401 gataagatac tatgttaaat gtttccaaga agccatttac tctctactcc aaattgctgg
2461 tgcagccttc gtcacctcac gcatcgtgag gcgcatgaac atctcaaacc tctggtcgaa
2521 gccacccatc gaggagggtg atgagcctga agacaaagga ggatgcccca agcccaggga
2581 tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga agggcaagaa
2641 caagtctggt cggggcaaga aacacacagc cttctcatcc aagggcctca gtgatgaaga
2701 gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa tagaggaata
2761 cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcca ctgaggagga
2821 cttctgtgaa gaggaggaga tcaaaatccg ccaaagaatc ttccgaccca ccaggaagca
2881 gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca gaaagaggaa
2941 tccagatgac tttaaaccaa aaggaaagtt gtgggctgat gacaacagga gcgtggatta
3001 caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag tcaactttgg
3061 cacaggctgg ggattttggg tttctccaag tctctttata acttcaacac acgtcatacc
3121 aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc acaaatctgg
3181 agaattttgc cgcttgcggt ttccaaagcc aatcagacca gacgtgagtg ggatgatctt
3241 ggaagagggt gcccctgaag gcactgttgt gtctattctc atcaaaagga caacagggga
3301 gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc aaggtagaac
3361 ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaagca tggatctagg
3421 cacaacgcca ggtgactgcg ggtgtccata catatacaaa aggggcaatg acttcgtggc
3481 cattggggtg cacactgcag cagcacgtgg aggcaacacg gtcatatgtg ccacacaggg
3541 aagtgaaggt gaagccactc ttgaaggagg tgacaacaag ggtacctatt gtggggcccc
3601 cattttggga cctggcaatg caccaaaatt gagcacaaaa acaaaattct ggagatcctc
3661 taacgcaccg cttcccccag gtacttatga accagcatac cttggtggaa gagacccgcg
3721 cgtgaaggga ggcccatctc tgcaacaagt tatgagagac caacttaaac cttttacaga
3781 gcccagaggg aagccaccaa acccaaatgt cctagagtca gcaaagaaga ctatcatcaa
3841 tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag cttgtgcatc
3901 cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg actattggag
3961 tggtgaatcc ttcacaggga aacttgcaga ccaggcttca aaagcaaatc tcatgtatga
4021 ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac
4081 tgacaaaatt tatggcaaga tcaagaaaag actcctgtgg ggttctgacc tctccaccat
4141 gattcgatgc gccagagcat ttggtggtct catggatgag ctcaaagcaa attgtatcac
4201 actccctatc agagttggta tgaatatgaa tgaagacggt cccataatat ttgagaaaca
4261 ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca cacaacagcg
4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagctggc
4381 acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat
4441 cgctatcaat gaaggcctac catctggcgt gccttgcacc tcacaatgga attctattgc
4501 ccactggtta ctcaccctgt gtgccctttc tgaagtgaca ggactaggtc ctgacatcat
4561 acaagccaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa
4621 attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac ccactcggcc
4681 cgacaaaact gaggggccgc tggtgattag tgaagacctg aatgggttga ctttcctccg
4741 ccgaacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa actccatcct
4801 caggcagttg tactggacaa gaggacccaa tcatgaagac cccagtgaga ccatgatacc
4861 acacgcacag agacctgtgc agctcatggc actactagga gaatcctccc tacatggacc
4921 ctcattttac agcaaggtta gcaaactggt catatctgaa cttaaagagg gaggaatgga
4981 tttttatgtg cccagacaag agtcaatgtt cagatggatg aggttctcag atctaagcac
5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaacaac gagacccttc
5161 ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa aacaacataa
5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac
5281 ccagaaactc ccctggagaa attttactaa acctagagtt gggccctgat ttgaaccctt
5341 atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa gttcaggttc
5401 tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc ccgccaaatt
5461 tcccagtgga attcttaagc ccagcccaga ttacaatgct cccacactta atagtagatg
5521 tcaggactct tgaaccaatt atgatcccac tccctgatgt taggaataca ttcttccatt
5581 ataacaacca acctaacagc cgcatgagat tagtggctat gctctacacc ccccttagat
5641 ctaatggctc aggcgatgat gtctttactg tctcttgtag ggttttgact aggcctactc
5701 ctgattttga gttcacttat ttagtgccac cttctgttga atctaagact aagccttttt
5761 ccttacctat tttaaccctt tctgagctca caaattcgag gttcccagtc cccatcgatt
5821 cgcttttcac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgcacac
5881 ttgatggtga gttacaaggc acaacccagt tgctcccatc tggcatctgt gcattcagag
5941 gacgggtgac agcagaaact gaccatcgtg acaagtggca catgcaactg caaaacctca
6001 atggcacaac atatgaccca actgatgatg tgccagcccc gctgggtaca cctgacttca
6061 agggcgtcgt gtttggggta gcaagccaaa gaaatgtggg taatgatgcg cctggctcaa
6121 ccagggccca tgaggcggtg atttcaacct atagccccca atttgtcccc aaattaggtt
6181 ctgtcaattt tggaagtaat gataatgatt tccaattgca gccgacaaaa ttcacaccag
6241 tgggcatcaa tgacgatggt gaccacccgt tcagacagtg ggaactacca gactattcag
6301 ggctgcttac cttgaatatg aacctcgccc ccccggttgc tccaaatttc cctggtgaac
6361 aattattatt cttcagatct tttgtgccat gctcaggagg ttataatcaa ggcattgtag
6421 attgtcttat tccccaagaa tggatccaac acttctatca ggaatcagcg ccctcccagt
6481 cagacgtggc cctaatcagg tatgttaacc ccgatacggg acgcacactg tttgaagcaa
6541 aattgcacag atctggctac attactgtgg ctcactctgg agactatcct cttgttgttc
6601 cggctaatgg atattttaga tttgattctt gggtaaatca gttttactca ctcgccccaa
6661 tgggaactgg gaatgggcga aggagggctc agtaatggct ggagctttca ttgcaggatt
6721 ggcaggcgac atgctcacgt catctgtggg ctccctggtg aacgcagggg caaacgccat
6781 caaccaaaag atagactttg aaaacaacaa acaactccag tctgcttcct ttcagcatga
6841 taaagagatg ctccaagcgc aggtgaaggc aaccaagcag ctgcaatctg aaatgatagc
6901 cctaaaacag ggggttttgg ccgcaggcgg cttttccccc actgatgcag caaggggagc
6961 cattggtgca cccatgacaa aggtgcttga ctggtctggt actcgatact gggcacccaa
7021 ttccacaaag acaactggtt attcgggaca attcacctct tcacctgtgc acatgcctag
7081 cccaaatgct ccacaatcaa aacctgcaaa gcctaggtct ccagctcctt cctcttcttc
7141 tagtagtgtc tatagtatgt ctactcaatc aactcattta acatctggct cttctagtaa
7201 tgcttcttct gcctctacaa aattgacaaa cttaagttct ggctcctctc aaaacagaac
7261 agcagagtgg gtgaaccaac agagaagtct tagccctttc atgagtggcg cactcaatat
7321 ctcacatgtc acgccaccct caagtagggc ttccagttct gggacggtct cgaccgtgcc
7381 caaggaagtt ttggactcct ggacgtctgc gtttaacaca cacagacagc cgctcttcgc
7441 acacctcaga gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg gctataatgt
7501 gatttctttt taaaatttgg taatttgtat cttttaaaa
//