Typing tool
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Complete norovirus genomes
LC369249 | GII.17 | ||
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GII.P17 |
ORF1: 1..5101 ORF2: 5082..6704 ORF3: 6704..7483LOCUS LC369249 7549 bp RNA linear VRL 28-JUN-2023 DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/SA-150 genomic RNA, nearly complete genome. ACCESSION LC369249 VERSION LC369249.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y., Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N., Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R., Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N., Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and Kimura,H. TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017 JOURNAL Front Microbiol 10, 2189 (2019) PUBMED 31611853 REMARK DOI:10.3389/fmicb.2019.02189 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7549) AUTHORS Doan,Y.H., Katayama,K. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7549 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="NoV/Hu/JP/2015/GII.P17-GII.17/SA-150" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan:Saitama" /collection_date="2015" /note="genotype: GII.P17-GII.17" gene <1..5101 /gene="POL" CDS <1..5101 /gene="POL" /note="start codon is not identified" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BBD04719.1" /translation="ASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQ PPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPD AQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS LAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGK LRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL AKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK AKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARA SGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTL DELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLR SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYW SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL STMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5082..6704 /gene="VP1" CDS 5082..6704 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBD04720.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6704..7483 /gene="VP2" CDS 6704..7483 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBD04721.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 ggcgtctaac gacgcttccg ctgccgttgc tggcaaaaac aacaacaacg acaaggaaaa 61 atcttcaagt gacagcttgt ttgctaacat gtctgtcact tttaagaaag ccctcggggc 121 gcggtctaaa caaccgcccc cgggagaaac aaaacaaata caaaaaccac caaggccacc 181 gacaccggaa ttggtgaaga gaatacctcc acccccaccc aatggcgagg atgaaccagg 241 gatagtgtac aaggtgggag agggtgtgtc tgggctgccc gacctaacaa ctgtggtaca 301 acctgacgca caaaacacag cttatagtgt tcccccactt agccagagag aagtcggcga 361 agctaaagaa ccgctgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta 421 tgggctgtat gttgagcggg ggcatgtgct cggagtacac aaaccacctg ctgcaataag 481 ccttgccaaa attgaaataa caccgctgtc tctctactgg agagtggtct acactcccca 541 gtatttgata gatccaggaa ctcttaagaa cttgagtgga gagactttcc catacacggc 601 ctttgacaac aactgttatg ccttctgttg ttgggtccta gacctcaacg actcctggct 661 tagcaggaga atgatccaaa gaacaactgg attcttcaaa ccttatcagg attggaacag 721 aaaaccctta ccaaccatgg atgaaccgaa aatcaagaag gccgcgaatg ctgtcctatg 781 cgctctctcc tcactcttca ctagacccat taaggacatc attggaaagc ttaggccact 841 gaacattctt aatatactgg caacctgcga ttggactttt gcaggcatag tggaatcctt 901 gatccttctt gctgaactct ttggggtgtt ctggacaccc ccagatgtgt ctgcgatgat 961 tgctccctta ctcggtgact acgagatgca aggccccgaa gacctggccg tggaacttgt 1021 gcccgtggtg atgggaggaa taggtttggt gttaggattc accaaagaaa agatcggcaa 1081 gatgctttca tcagctgcga ccacacttag ggcctgcaag gatctaggat cttatggatt 1141 ggagatactc aaattggtca tgaagtggtt cttccccaag aaggaggagg ctaacgaact 1201 agccatggtg agggccattg aggatgcagt cctggatttg gaggcaatag aaaacaatca 1261 catgaccacc cttctcaagg ataaagacag cctggccaca tacatgagga ctcttgactt 1321 ggaagaagag aaagcaagga aactgtcaac caaatcggcg tcacctgaca tcgtgggtac 1381 aataaacgca ttattggcta ggatagcagc cgccaggtca ctggtccaca aggctaagga 1441 ggagctctcg agcagacaga gacctgttgt tgtaatgata tcaggtagac caggtatagg 1501 aaagacccat ctggccagag agctagccaa gaaagttgcg tcaacactgt caggcgacca 1561 aaggattgga ctggtaccta gaaatggcgt cgaccattgg gacgcctaca agggagaaag 1621 ggtggtcctg tgggatgatt atggtatgag caaccctata caggacgcac tgaggctcca 1681 agaattggct gacacctgtc ctctgaccct aaattgtgat aggattgaaa acaaaggaaa 1741 agtgttcgac agtgatgcca taattataac aaccaacctt gcaaacccag caccactaga 1801 ctatgtcaac tttgaggcct gctctagacg catagacttc ttggtgtatg cagacgcacc 1861 tgacattgag aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccattt 1921 cagaccagac ttctcacaca ttaaacttca gctggcacca cagggaggtt ttgacaaaaa 1981 tggcaacacc ccacatggca aaggtgtggt gaagtccctg acgattggtt ctctgatcgc 2041 cagggcctcc ggcttgctcc acgagagaat ggatgaattc gagctccaag gctctgacct 2101 gccaaccttc aattttgacc gcaacaaagt cgccgccttc agacaattag cagctgaaaa 2161 caaatatggt cttatggaca cattgagggt cggcaaccaa ctgaaaagtg ttaagaccct 2221 ggatgagctg aagcaggcca taaagaacat cagtatcaag aagtgtcaga tagtgtataa 2281 tggatgcacc tataccatgg aatctgatgg gaggggcaag gttgtggttg aaaaggtaca 2341 aaacgcaaca gttcaaacca acaatgaact tgtaggggcg ctccaccacc tgagatctgc 2401 aaggataaga tactatgtta aatgtttcca agaagccatt tactctctac tccaaattgc 2461 tggtgcagcc ttcgtcacct cacgcatcgt gaggcgcatg aacatatcaa acctctggtc 2521 gaagccaccc atcgaggagg gtgatgagcc tgaagacaga ggaggatgcc ccaagcccag 2581 ggatgaagat gacctcacta ttgactctag agacattaaa gtggaaggga agaagggcaa 2641 gaacaagtct ggccggggca agaaacacac agccttctct tccaagggcc tcagtgatga 2701 agagtacgat gagtacaaga gaatcagaga ggagaggaat ggcaaatact caatagagga 2761 atacctccaa gatagggaca gatactatga agagcttgcc attgctaagg ccactgagga 2821 ggacttctgt gaggaggagg agatcaaaat ccgccagaga atcttccgac ccaccaggaa 2881 gcagcggaaa gaggaaaggg ccacgcttgg gcttgtcaca ggatcggaaa tcagaaagag 2941 gaatccagat gactttaaac caaaaggaaa attgtgggct gatgacaaca ggagcgtgga 3001 ttacaatgag aggatagatt ttgaggctcc cccgagtgtt tggtctagga tagtcaactt 3061 tggcacaggc tggggattct gggtttctcc aagtctcttt ataacttcaa cacacgtcat 3121 accaaaagga atcactgagg cctttggagt gcccataaac caaatccaaa ttcacaaatc 3181 tggagaattt tgccgcttgc ggtttccaaa gccaattaga ccagacgtga gtgggatgat 3241 cttggaagag ggcgcccctg aaggcactgt tgtgtctatt ctcatcaaaa ggacaacagg 3301 ggagctgatg cctcttgcag tcagaatggg gactcatgcc acaatgaaaa tccaaggtag 3361 aacggtgggt ggtcagatgg gtatgcttct cactggctca aatgctaaaa gcatggatct 3421 aggcacaacg ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt 3481 ggtcattggg gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca 3541 gggaagtgaa ggtgaagcca ctcttgaagg aggtgacaac aagggtacct attgtggagc 3601 ccccattttg ggacctggca atgcaccaaa attgagcaca aagacaaaat tctggagatc 3661 ctctaacgca ccgcttcccc caggtactta tgaaccagca taccttggtg ggagagaccc 3721 gcgcgtgaag ggaggcccat ctctgcaaca agttatgaga gaccaactta aaccttttac 3781 agagcccaga gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat 3841 caatgttctg gaacaaacca ttgacccccc tcaaaagtgg tcatatgccc aagcttgtgc 3901 atccctcgac aagacaacct ccagtggata cccgcaccac gtccggaaga atgactattg 3961 gagtggtgaa tccttcacag gaaaacttgc agatcaggct tcaaaagcaa atctcatgta 4021 tgaggaaggc aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa 4081 aactgacaaa atttatggaa aaatcaagaa aagactcctg tggggttctg acctctccac 4141 aatgattcga tgcgccagag catttggtgg tctcatggat gaattcaaag caaattgtat 4201 tacactccct atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa 4261 acactccagg tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca 4321 gcgggcagtg ctggaagcgg cacttgaaat catggtgagg ttttctgctg agccacagct 4381 ggcacaaata gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa 4441 aatcgctatc aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat 4501 tgcccactgg ttacttacct tgtgtgccct ttctgaagtg acaggattag gtcctgacat 4561 catacaagct aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat 4621 aaaattggac ccagagaaat tgaccgcaaa gctcaaagaa tatggcctta aacccactcg 4681 gcccgacaaa actgaggggc cgttggtgat tagtgaggac ctgaatgggt tgactttcct 4741 ccgccgaaca gtcacccgtg atccagcagg ttggtttgga aagttggacc aaaactccat 4801 cctcaggcag ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat 4861 accacacgca caaagacctg tgcagctcat ggcactacta ggagaatcct ccctacatgg 4921 accctcattt tacagcaagg ttagcaaatt agtcatatct gaacttaaag agggaggaat 4981 ggatttttat gtgcccagac aagagtcaat gttcagatgg atgaggttct cagatctaag 5041 cacatgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg 5101 acgccgctcc atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc 5161 ttcccctaga accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata 5221 taattgaccc ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt 5281 cacccagaaa ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc 5341 cttatttggc tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg 5401 ttctcctggc agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa 5461 atttcccagt ggaattctta agcccagccc agatcacaat gctcccacat ttaatagtag 5521 atgttaggac tcttgaacca attatgatcc cactccctga tgttaggaat acattcttcc 5581 attatagtaa ccagcctaat agccgcatga gattagtggc tatgctctat accccactca 5641 gatctaatgg ctcaggtgat gatgtcttta ctgtctcttg cagggttttg actaggccca 5701 ctcctgattt tgagttcact tatttagtgc caccttctgt tgaatctaaa actaagcctt 5761 tttccttacc tattttaacc ctttctgagc tcacaaattc gaggtttcca gtccccatcg 5821 attcgctctt caccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgta 5881 cacttgatgg tgagttacaa ggcacaaccc agttgctccc aactggcatc tgtgcattca 5941 gaggacgggt gacagcacaa attaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc 6001 tcaatggtac aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact 6061 tcaagggcgt cgtgtttggg atggtaagcc aaagaaatgt gggtaatgat gcgcctggct 6121 caaccagagc ccaacaggcg tgggtttcaa cctatagccc ccaatttgtc cccaaattag 6181 gttctgtcaa tcttagaatt agtgataatg atgatttcca attccagccg acaaaattca 6241 caccagtggg cgtcaatgat gacgatgatg gccacccgtt cagacaatgg gaactaccaa 6301 actattcagg ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc 6361 ctggtgaaca attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag 6421 gtattataga ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcac 6481 cctcccagtc agacgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt 6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc 6601 ttgttgttcc ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac 6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat 6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc 6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt 6841 tcagcatgat aaagagatgc tccaagcgca ggtgagggca accaagcagc tgcaatctga 6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc 6961 aaggggatcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg 7021 ggcgcccaat tccacaaaga caactggcta ttcgggacaa ttcacctctt cacctgtgca 7081 tatgtctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc tagctccttc 7141 ctcttcttct agcagtgtct atagtatgta tactcaatct actcatttaa catctggctc 7201 ttctagtaat gcttcttctg cctccacaaa attgacaaat ttaagctctg gctcctctca 7261 aaacagaaca gcagagtggg taaatcaaca gagaagtctt agccctttca tgagtggcgc 7321 acttaacatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc 7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc 7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataattgg 7501 ctataatgtg atttctttct aaatttggct aatttgtatc ttttaaaaa //