Typing tool
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Typing tool
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Complete norovirus genomes
| LC369241 | GII.17 | |
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| GII.P17 |
ORF1: 5..5107
ORF2: 5088..6710
ORF3: 6710..7489
LOCUS LC369241 7554 bp RNA linear VRL 28-JUN-2023
DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/MI-92 genomic RNA,
complete genome.
ACCESSION LC369241
VERSION LC369241.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y.,
Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N.,
Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R.,
Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N.,
Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and
Kimura,H.
TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase
Regions of Human Norovirus GII.P17-GII.17 in 2013-2017
JOURNAL Front Microbiol 10, 2189 (2019)
PUBMED 31611853
REMARK DOI:10.3389/fmicb.2019.02189
REFERENCE 2 (bases 1 to 7554)
AUTHORS Doan,Y.H., Katayama,K. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of
Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
Japan
FEATURES Location/Qualifiers
source 1..7554
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="NoV/Hu/JP/2015/GII.P17-GII.17/MI-92"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan:Miyagi"
/collection_date="2015"
/note="genotype: GII.P17-GII.17"
gene 5..5107
/gene="POL"
CDS 5..5107
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBD04695.1"
/translation="MASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK
QPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGG
CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5088..6710
/gene="VP1"
CDS 5088..6710
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBD04696.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6710..7489
/gene="VP2"
CDS 6710..7489
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBD04697.1"
/translation="MAGVFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNASQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gaagatggcg tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa
61 ggaaaaatct tcaagtgaca gcttgtttgc taacatgtct gtcactttta agaaagccct
121 cggggcgcgg tctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag
181 gccaccgaca ccggaattgg tgaagagaat acctccaccc ccacccaatg gcgaggatga
241 accagggata gtgtacaagg tgggagaggg tgtgtctggg ctgcccgacc taacaactgt
301 ggtacaacct gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt
361 cggcgaagct aaagaaccgc tgcctggctc cattctggaa atgtgggatg gtgagatcta
421 ccactatggg ctgtatgttg agcgggggca tgtgctcgga gtacacaaac cacctgctgc
481 aataagcctt gccaaaattg aaataacacc gctgtctctc tactggagag tggtctacac
541 tccccagtat ttgatagatc caggaactct taagaacttg agtggagaga ctttcccata
601 cacggccttt gacaacaact gttatgcctt ctgttgttgg gtcctagacc tcaacgactc
661 ctggcttagc aggagaatga tccaaagaac aactggattc ttcaaacctt atcaggattg
721 gaacagaaaa cccttaccaa ccatggatga accgaaaatc aagaaggccg cgaatgctgt
781 cctatgcgct ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag
841 accactgaac attcttaata tactggcaac ctgcgattgg acttttgcag gcatagtgga
901 atccttgatc cttcttgctg aactctttgg ggtgttctgg acacccccag atgtgtctgc
961 gatgattgct cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga
1021 acttgtgccc gtggtgatgg gaggaatagg tttggtgtta ggattcacca aagaaaagat
1081 cggcaagatg ctttcatcag ctgcgaccac acttagggcc tgcaaggatc taggatctta
1141 tggattggag atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa
1201 cgaactagcc atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagaaaa
1261 caatcacatg accacccttc tcaaggataa agacagcctg gccacataca tgaggactct
1321 tgacttggaa gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacatcgt
1381 gggtacaata aacgcattat tggctaggat agcagccgcc aggtcactgg tccacaaggc
1441 taaggaggag ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg
1501 tataggaaag acccatctgg ccagagagct agccaagaaa gttgcgtcaa cactgtcagg
1561 cgaccaaagg attggactgg tacctagaaa tggcgtcgac cattgggacg cctacaaggg
1621 agaaagggtg gtcctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag
1681 gctccaagaa ttggctgaca cctgtcctct gaccctaaat tgtgatagga ttgaaaacaa
1741 aggaaaagtg ttcgacagtg atgccataat tataacaacc aaccttgcaa acccagcacc
1801 actagactat gtcaactttg aggcctgctc tagacgcata gacttcttgg tgtatgcaga
1861 cgcacctgac attgagaagg ctaagcgtga cttccctggc caaccagata tgtggaaaga
1921 ccatttcaga ccagacttct cacacattaa acttcagctg gcaccacagg gaggttttga
1981 caaaaatggc aacaccccac atggcaaagg tgtggtgaag tccctgacga ttggttctct
2041 gatcgccagg gcctccggct tgctccacga gagaatggat gaattcgagc tccaaggctc
2101 tgacctacca accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc
2161 tgaaaacaaa tatggtctta tggacacatt gagggtcggc aaccaactga aaagtgttaa
2221 gaccctggat gagctgaagc aggccataaa gaacatcagt atcaagaagt gtcagatagt
2281 gtataatgga tgcacctata ccatggaatc tgatgggagg ggcaaggttg tggttgaaaa
2341 ggtacaaaac gcaacagttc aaaccaacaa tgaacttgta ggggcgctcc accacctgag
2401 atctgcaagg ataagatact atgttaaatg tttccaagaa gccatttact ctctactcca
2461 aattgctggt gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tatcaaacct
2521 ctggtcgaag ccacccatcg aggagggtga tgagcctgaa gacagaggag gatgccccaa
2581 gcccagggat gaagatgacc tcactattga ctctagagac attaaagtgg aagggaagaa
2641 gggcaagaac aagtctggcc ggggcaagaa acacacagcc ttctcttcca agggcctcag
2701 tgatgaagag tacgatgagt acaagagaat cagagaggag aggaatggca aatactcaat
2761 agaggaatac ctccaagata gggacagata ctatgaagag cttgccattg ctaaggctac
2821 tgaggaggac ttctgtgagg aggaggagat caaaatccgc cagagaatct tccgacccac
2881 caggaagcag cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag
2941 aaagaggaat ccagatgact ttaaaccaaa aggaaaattg tgggctgatg acaacaggag
3001 cgtggattac aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt
3061 caactttggc acaggctggg gattctgggt ttctccaagt ctctttataa cttcaacaca
3121 cgtcatacca aaaggaatca ctgaggcctt tggagtgccc ataaaccaaa tccaaattca
3181 caaatctgga gaattttgcc gcttgcggtt tccaaagcca attagaccag acgtgagtgg
3241 gatgatcttg gaagagggcg cccctgaagg cactgttgtg tctattctca tcaaaaggac
3301 aacaggggag ctgatgcctc ttgcagtcag aatggggact catgccacaa tgaaaatcca
3361 aggtagaacg gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat
3421 ggatctaggc acaacgccag gtgactgcgg atgtccatac atatacaaaa ggggcaatga
3481 ccttgtggtc attggggtgc acactgcagc agctcgtgga ggcaacacgg tcatatgtgc
3541 cacacaggga agtgaaggtg aagccactct tgaaggaggt gacaacaagg gtacctattg
3601 tggagccccc attttgggac ctggcaatgc accaaaattg agcacaaaga caaaattctg
3661 gagatcctct aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag
3721 agacccgcgc gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc
3781 tttcacagag cccagaggga agccaccaaa cccaaatgtc ttagagtcag caaagaagac
3841 tatcatcaat gttctggaac aaaccattga cccccctcaa aagtggtcat atgcccaagc
3901 ttgtgcatcc ctcgacaaga caacctccag tggatacccg caccacgtcc ggaagaatga
3961 ctattggagt ggtgaatcct tcacaggaaa acttgcagat caggcttcaa aagcaaatct
4021 catgtatgag gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct
4081 cgtgaaaact gacaaaattt atggcaaaat taagaaaaga ctcctgtggg gttctgacct
4141 ctccacaatg attcgatgcg ccagagcatt tggtggtctc atggatgaat tcaaagcaaa
4201 ttgtattaca ctccctatca gagttggtat gaatatgaat gaagatggtc ccataatatt
4261 tgagaaacac tccaggtaca ggtaccacta tgatgctgat tactcccgct gggactccac
4321 acaacagcgg gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc
4381 acagctggca caaatagtgg cagaggacct gctgtcacca agtgtggttg atgtgggcga
4441 tttcaaaatc gctatcaatg aaggcctacc atctggcgtg ccttgcacct cacaatggaa
4501 ttctattgcc cactggttac ttaccttgtg tgccctttct gaagtgacag gattaggtcc
4561 tgacatcata caagctaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac
4621 agacataaaa ttggacccag agaaattgac cgcaaagctc aaagaatatg gccttaaacc
4681 cactcggccc gacaaaactg aggggccgtt ggtgattagt gaggacctga atgggttgac
4741 tttcctccgc cgaacagtca cccgtgatcc agcaggttgg tttggaaagt tggaccaaaa
4801 ctccatcctc aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac
4861 catgatacca cacgcacaaa gacctgtgca gctcatggca ctactaggag aatcctccct
4921 acatggaccc tcattttaca gcaaggttag caaattagtc atatctgaac ttaaagaggg
4981 aggaatggat ttttatgtgc ctagacaaga gtcaatgttc agatggatga ggttctcaga
5041 tctaagcaca tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
5101 cgaatgacgc cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaacaacg
5161 agacccttcc cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa
5221 ataatataat tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca
5281 cagtgtcacc cagaaactct cctggagaaa ttttattaaa tttagagttg ggccctgatt
5341 tgaaccctta tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag
5401 ttcaggttct cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc
5461 cgccaaattt cccagtggaa ttcttaagcc cagcccagat cacaatgctc ccacatttaa
5521 tagtagatgt taggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat
5581 tcttccatta tagtaaccag cctaacagcc gcatgagatt agtggctatg ctctataccc
5641 cactcagatc taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta
5701 ggcctactcc tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaaaacta
5761 agcctttttc cttacctatt ttaacccttt ctgagctcac aaattcgagg tttccagtcc
5821 ccatcgattc gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca
5881 ggtgtacact tgatggtgag ttacaaggca caacccagtt gctcccaact ggcatctgtg
5941 cattcagagg acgggtgaca gcacaaatta accaacgtga caggtggcac atgcaactgc
6001 aaaacctcaa tggtacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac
6061 ctgacttcaa gggcgtcgtg tttgggatgg taagccaaag aaatgtgggt aatgatgcgc
6121 ctggctcaac cagagcccaa caggcgtggg tttcaaccta tagcccccaa tttgtcccca
6181 aattaggttc tgtcaatctt agaattagtg ataatgatga tttccaattc cagccgacaa
6241 aattcacacc agtgggcgtc aatgatgacg atgatggcca cccgttcaga caatgggaac
6301 taccaaacta ttcaggggag cttaccttga atatgaatct tgccccccca gttgctccaa
6361 attttcctgg tgaacaattg ttattcttca gatctttcgt gccatgctca ggaggttaca
6421 accaaggtat tatagattgt cttattcccc aagaatggat ccaacacttc tatcaggaat
6481 cagcaccctc ccagtcagac gtggccctaa tcaggtatgt caaccccgat acgggacgta
6541 cactgtttga agcaaaattg cacagatctg gttacatcac tgtggctcac tctggagact
6601 atcctcttgt tgttccggct aatggacact ttagatttga ttcttgggta aatcagtttt
6661 actcactcgc cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggggt
6721 tttcattgca ggattggcag gcgacatgct cacgtcatct gtgggctccc ttgtgaacgc
6781 aggggcaaac gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc
6841 ttcctttcag catgataaag agatgctcca agcgcaggtg agggcaacca agcagctgca
6901 atctgaaatg atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga
6961 tgcagcaagg ggatccattg gtgcacccat gacaaaggtg cttgactggt ctggcactcg
7021 atactgggcg cccaattcca caaagacaac tggctattcg ggacaattca cctcttcacc
7081 tgtgcatatg tctagcccaa atgcttcaca atcaaaacct gcaaagccta ggtctctagc
7141 tccttcctct tcttctagca gtgtctatag tatgtatact caatctactc atttaacatc
7201 tggctcttct agtaatgctt cttctgcctc cacaaaattg acaaatttaa gctctggctc
7261 ctctcaaaac agaacagcag agtgggtaaa tcaacagaga agtcttagcc ctttcatgag
7321 tggcgcactt aacatctcac atgtcacgcc accctcaagt agggcttcca gttctgggac
7381 ggtctcgacc gtgcccaagg aagttttgga ctcctggacg tctgcgttta acacacacag
7441 acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat
7501 aattggctat aatttgattt ctttctaaat tcggctaatt tgtgtctttt aaaa
//