Typing tool
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Complete norovirus genomes
LC369240 | GII.17 | ||
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GII.P17 |
ORF1: 1..5101 ORF2: 5082..6704 ORF3: 6704..7483LOCUS LC369240 7554 bp RNA linear VRL 28-JUN-2023 DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/MI-91 genomic RNA, nearly complete genome. ACCESSION LC369240 VERSION LC369240.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y., Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N., Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R., Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N., Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and Kimura,H. TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017 JOURNAL Front Microbiol 10, 2189 (2019) PUBMED 31611853 REMARK DOI:10.3389/fmicb.2019.02189 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7554) AUTHORS Doan,Y.H., Katayama,K. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7554 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="NoV/Hu/JP/2015/GII.P17-GII.17/MI-91" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan:Miyagi" /collection_date="2015" /note="genotype: GII.P17-GII.17" gene <1..5101 /gene="POL" CDS <1..5101 /gene="POL" /note="start codon is not identified" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BBD04692.1" /translation="ASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQ PPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPD AQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS LAKIEITPLSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGK LRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL AKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK AKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARA SGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKTL DELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVERVQNATVQTNNELVGALHHLR SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG TVVTILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDQRVKGGPSLQQVMRDQLKPFTEP RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYW SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL STMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5082..6704 /gene="VP1" CDS 5082..6704 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBD04693.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6704..7483 /gene="VP2" CDS 6704..7483 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBD04694.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 ggcgtctaac gacgcttccg ctgccgttgc tggcaaaaac aacaacaacg acaaggaaaa 61 atcttcaagt gacagcttgt ttgctaacat gtctgttact tttaagaaag ccctcggggc 121 gcggtctaaa caaccgcccc cgggagaaac aaaacaaata caaaaaccac caaggccacc 181 gacaccggaa ttggtgaaga gaatacctcc acccccacct aatggcgagg atgaaccagg 241 gatagtgtac aaggtgggag agggtgtgtc tgggctgccc gacctaacaa ctgtggtaca 301 acctgacgca caaaacacag cttatagtgt tcccccactt agccagagag aagtcggcga 361 agctaaagaa ccgctgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta 421 tgggctgtat gttgagcggg ggcatgtgct cggagtacac aaaccacctg ctgcaataag 481 ccttgccaaa attgaaataa caccgctgtc tctctactgg agagtggtct acactcccca 541 gtatttgata gctccaggaa ctcttaagaa cttgagtgga gagactttcc catacacggc 601 ctttgacaac aactgttatg ccttctgttg ttgggtccta gacctcaacg actcctggct 661 tagcaggaga atgatccaaa gaacaactgg attcttcaaa ccttatcagg attggaacag 721 aaaaccctta ccaaccatgg atgaaccgaa aatcaagaag gccgcgaatg ctgttctatg 781 cgctctctcc tcactcttca ctagacccat taaggacatc attggaaagc ttagaccact 841 gaacattctt aatatactgg caacctgcga ttggactttt gcaggcatag tggaatcctt 901 gatccttctt gctgaactct ttggggtgtt ctggacaccc ccagatgtgt ctgcgatgat 961 tgctccctta ctcggtgact acgagatgca aggccccgaa gacctggccg tggaacttgt 1021 gcccgtggtg atgggaggaa taggtttggt gttaggattc accaaagaaa agatcggcaa 1081 gatgctatca tcagctgcaa ccacacttag ggcctgcaag gatctaggat cttatggatt 1141 ggagatactc aaattggtca tgaagtggtt cttccccaag aaggaggagg ctaacgaact 1201 agccatggtg agggccattg aggatgcagt cctggatttg gaggcaatag aaaacaatca 1261 catgaccacc cttctcaagg ataaagacag cctggccaca tacatgagga ctcttgactt 1321 ggaagaagag aaagcaagga aactgtcaac caaatcggcg tcacctgaca ttgtgggtac 1381 aataaacgca ttattggcta ggatagcagc cgccaggtca ctggtccaca aggctaagga 1441 ggagctctcg agcagacaga gacctgttgt tgtaatgata tcaggtagac caggtatagg 1501 aaagacccat ctggccagag agctagccaa gaaagttgcg tcaacactgt caggcgacca 1561 aaggattgga ctggtaccta gaaatggcgt cgaccattgg gacgcctaca agggagaaag 1621 ggtggttctg tgggatgatt atggtatgag caaccctata caggacgcac tgaggctcca 1681 agaattggct gacacctgtc ctctgaccct aaattgtgac aggattgaaa acaaaggaaa 1741 agtgttcgac agtgatgcca taattataac aaccaacctt gcaaacccag caccactaga 1801 ctatgtcaac tttgaggcct gctctagacg catagacttc ttggtgtatg cagacgcacc 1861 tgacattgag aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccattt 1921 cagaccagac ttctcacaca ttaaacttca gctggcacca cagggaggtt ttgacaaaaa 1981 tggcaacacc ccacatggca aaggtgtggt gaagtccctg acgattggtt ctctgatcgc 2041 cagggcctct ggcttgctcc acgagagaat ggatgaattc gagctccaag gctctgacct 2101 gccaaccttc aattttgacc gcaacaaagt cgccgccttc agacaattag cagctgaaaa 2161 caaatatggt cttatggaca cgctgagggt cggcaaccaa ctgaaaaatg ttaagaccct 2221 ggatgagctg aagcaggcca taaagaacat cagtatcaag aagtgtcaga tagtgtataa 2281 tggatgcacc tataccatgg aatctgatgg gaggggcaag gttgtggttg aaagggtaca 2341 aaacgcaaca gttcaaacca acaatgaact tgtaggggcg ctccaccacc tgagatctgc 2401 aaggataagg tactatgtta aatgtttcca agaagccatt tactctctac tccaaattgc 2461 tggtgcagcc ttcgtcacct cacgcatcgt gaggcgcatg aacatatcaa acctctggtc 2521 gaagccaccc atcgaggagg gtgatgagcc tgaagacaga ggaggatgcc ccaagcccag 2581 ggatgaagat gacctcacta ttgactctag agacattaaa gtggaaggga agaagggcaa 2641 gaacaagtct ggccggggca agaaacacac agccttctct tccaagggcc tcagtgatga 2701 agagtacgat gagtacaaga gaatcagaga ggagaggaat ggcaaatact caatagagga 2761 atacctccaa gatagggaca gatactatga agagcttgcc attgctaagg ccactgagga 2821 ggacttctgt gaggaggagg agatcaaaat ccgccagaga atcttccgac ccaccaggaa 2881 gcagcggaaa gaggaaaggg ccacgcttgg gcttgtcaca ggatcggaaa tcagaaagag 2941 gaatccagat gactttaaac caaaagggaa attgtgggct gatgacaaca ggagtgtgga 3001 ttacaatgag aggatagatt ttgaggctcc cccgagtgtt tggtctagga tagtcaactt 3061 tggcacaggc tggggattct gggtttctcc aagtctcttt ataacttcaa cacacgtcat 3121 accaaaagga atcactgagg cctttggagt gcccataaac caaatccaaa ttcacaaatc 3181 tggagaattt tgccgcttgc ggtttccaaa gccaattagg ccagacgtga gtgggatgat 3241 cttggaagag ggtgcccctg aaggcactgt tgtgactatt ctcatcaaaa ggacaacagg 3301 ggagctgatg cctcttgcag ttagaatggg gactcatgcc acaatgaaaa tccaaggtag 3361 aacggtgggt ggtcagatgg gtatgcttct cactggctca aatgctaaaa gcatggatct 3421 aggcacaacg ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt 3481 ggtcattggg gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca 3541 gggaagtgaa ggtgaagcca ctcttgaagg aggtgacaac aagggtacct attgtggagc 3601 ccccattttg ggacctggca atgcaccaaa attgagcaca aagacaaaat tctggagatc 3661 ctctaacgca ccgcttcccc caggtactta tgaaccagca taccttggtg ggagagacca 3721 gcgcgtgaag ggaggcccat ctctgcaaca agttatgaga gaccaactta aaccttttac 3781 agagcccaga gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat 3841 caatgttctg gaacaaacca ttgacccccc tcaaaagtgg tcatatgccc aagcctgtgc 3901 atccctcgac aagacgacct ccagtggata cccgcaccac gtccggaaga atgactattg 3961 gagtggagaa tccttcacag gaaaacttgc agatcaggct tcaaaagcaa atctcatgta 4021 tgaggaaggc aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa 4081 aactgataaa atttatggca aaatcaagaa aagactcctg tggggttctg acctctccac 4141 aatgattcga tgcgccagag catttggtgg tctcatggat gaattcaaag caaattgtat 4201 cacactccct atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa 4261 acactccagg tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca 4321 gcgggcagtg ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct 4381 ggcacaaata gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa 4441 gatcgctatc aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat 4501 tgcccactgg ttacttacct tgtgtgccct ttctgaagtg acaggattag gtcctgatat 4561 catacaagct aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat 4621 aaaattggac ccagagaaat tgaccgcaaa gctcaaagaa tatggcctta aacccacccg 4681 gcccgacaaa actgaggggc cgttggtgat tagtgaagac ctgaatgggt tgactttcct 4741 ccgccgaaca gtcacccgtg atccagcagg ttggtttgga aagttggacc aaaactccat 4801 cctcaggcag ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat 4861 accacacgca cagagacctg tgcagctcat ggcactacta ggtgaatcct ccctacatgg 4921 accctcattt tacagcaagg ttagcaaatt agtcatatct gaacttaaag agggaggaat 4981 ggatttttat gtgcccagac aagagtcaat gttcagatgg atgaggttct cagatctaag 5041 cacatgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg 5101 acgccgctcc atctaatgat ggtgctgctg gtctcgtacc agagggcaat aacgagaccc 5161 ttcccctaga accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataaca 5221 taattgaccc ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt 5281 cacccagaaa ctctcctgga gaaattttat taaacttaga gttgggccct gatttgaatc 5341 cttatttggc tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg 5401 ttctcctggc agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa 5461 atttcccagt ggaattctta agcccagccc agatcacaat gctcccacat ttaatagtag 5521 atgttaggac tcttgaacca attatgatcc cactccctga tgttaggaat acattcttcc 5581 attatagtaa ccagcctaac agccgcatga gattagtggc tatgctctat accccactca 5641 gatctaatgg ctcaggtgat gatgtcttta ctgtctcttg cagggttttg actaggccta 5701 ctcctgattt tgagttcact tatttagtgc caccttctgt tgaatctaaa actaagcctt 5761 tttccttacc tattttaacc ctttctgagc tcacaaattc gaggttccca gtccccatcg 5821 attcgctttt caccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgca 5881 cacttgatgg tgagttacaa ggcacaaccc agttgctccc atctggcatc tgtgcattca 5941 gaggacgggt gacagcacaa attaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc 6001 tcaatggtac aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact 6061 tcaagggcgt cgtgtttggg atggtaagcc aaagaaatgt gggtaatgat gcgcctggct 6121 caaccagagc ccaacaggcg tgggtttcaa cctatagccc ccaatttgtc cccaaattag 6181 gttctgtcaa tcttagaatt agtgataatg atgatttcca attccagccg acaaaattca 6241 caccagtggg cgtcaatgat gacgatgatg gccacccgtt cagacaatgg gaattaccaa 6301 actattcagg ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc 6361 ctggtgaaca attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag 6421 gtattataga ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcac 6481 cctcccagtc agacgtggcc ctaatcaggt atgtcaatcc tgacacggga cgaacactgt 6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc 6601 ttgttgttcc ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac 6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat 6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc 6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt 6841 tcagcatgat aaagagatgc tccaagcgca ggtgaaggca accaagcagc tgcaatctga 6901 gatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc 6961 aaggggagcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg 7021 ggcgcccaac tccacaaaga caactggtta ttcgggacaa ttcacctctt cacctgtgca 7081 catgtctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc tagctccttc 7141 ctcttcttct agcagtgtct atagtatgta tactcaatct actcatttaa catctggctc 7201 ttctagtaat gcttcttctg cctctacaaa attgacaaat ttaagctctg gctcctctca 7261 aaacagaaca gcagagtggg taaatcaaca gagaagtctt agccctttca tgagtggcgc 7321 acttaacatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc 7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc 7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataattgg 7501 ctataatttg atttctttct aaattcggct aatttgtgtc ttttaaaaaa aaaa //