Typing tool
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Typing tool
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Complete norovirus genomes
| LC369239 | GII.17 | |
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| GII.P17 |
ORF1: 1..5099
ORF2: 5080..6702
ORF3: 6702..7481
LOCUS LC369239 7549 bp RNA linear VRL 28-JUN-2023
DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/MI-90 genomic RNA,
nearly complete genome.
ACCESSION LC369239
VERSION LC369239.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y.,
Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N.,
Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R.,
Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N.,
Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and
Kimura,H.
TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase
Regions of Human Norovirus GII.P17-GII.17 in 2013-2017
JOURNAL Front Microbiol 10, 2189 (2019)
PUBMED 31611853
REMARK DOI:10.3389/fmicb.2019.02189
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7549)
AUTHORS Doan,Y.H., Katayama,K. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of
Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
Japan
FEATURES Location/Qualifiers
source 1..7549
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="NoV/Hu/JP/2015/GII.P17-GII.17/MI-90"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Japan:Miyagi"
/collection_date="2015"
/note="genotype: GII.P17-GII.17"
gene <1..5099
/gene="POL"
CDS <1..5099
/gene="POL"
/note="start codon is not identified"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBD04689.1"
/translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP
PPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDA
QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIEITPLSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL
RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKTLD
ELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVERVQNATVQTNNELVGALHHLRS
ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP
KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVTILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDQRVKGGPSLQQVMRDQLKPFTEPR
GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5080..6702
/gene="VP1"
CDS 5080..6702
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBD04690.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6702..7481
/gene="VP2"
CDS 6702..7481
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBD04691.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac aaggaaaaat
61 cttcaagtga cagcttgttt gctaacatgt ctgttacttt taagaaagcc ctcggggcgc
121 ggtctaaaca accgcccccg ggagaaacaa aacaaataca aaaaccacca aggccaccga
181 caccggaatt ggtgaagaga atacctccac ccccacctaa tggcgaggat gaaccaggga
241 tagtgtacaa ggtgggagag ggtgtgtctg ggctgcccga cctaacaact gtggtacaac
301 ctgacgcaca aaacacagct tatagtgttc ccccacttag ccagagagaa gtcggcgaag
361 ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc taccactatg
421 ggctgtatgt tgagcggggg catgtgctcg gagtacacaa accacctgct gcaataagcc
481 ttgccaaaat tgaaataaca ccgctgtctc tctactggag agtggtctac actccccagt
541 atttgatagc tccaggaact cttaagaact tgagtggaga gactttccca tacacggcct
601 ttgacaacaa ctgttatgcc ttctgttgtt gggtcctaga cctcaacgac tcctggctta
661 gcaggagaat gatccaaaga acaactggat tcttcaaacc ttatcaggat tggaacagaa
721 aacccttacc aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct gttctatgcg
781 ctctctcctc actcttcact agacccatta aggacatcat tggaaagctt agaccactga
841 acattcttaa tatactggca acctgcgatt ggacttttgc aggcatagtg gaatccttga
901 tccttcttgc tgaactcttt ggggtgttct ggacaccccc agatgtgtct gcgatgattg
961 ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg gaacttgtgc
1021 ccgtggtgat gggaggaata ggtttggtgt taggattcac caaagaaaag atcggcaaga
1081 tgctatcatc agctgcaacc acacttaggg cctgcaagga tctaggatct tatggattgg
1141 agatactcaa attggtcatg aagtggttct tccccaagaa agaggaggct aacgaactag
1201 ccatggtgag ggccattgag gatgcagtcc tggatttgga ggcaatagaa aacaatcaca
1261 tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact cttgacttgg
1321 aagaagagaa agcaaggaaa ctgtcaacca aatcggcgtc acctgacatt gtgggtacaa
1381 taaacgcatt attggctagg atagcagccg ccaggtcact ggtccacaag gctaaggagg
1441 agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca ggtataggaa
1501 agacccatct ggccagagag ctagccaaga aagttgcgtc aacactgtca ggcgaccaaa
1561 ggattggact ggtacctaga aatggcgtcg accattggga cgcctacaag ggagaaaggg
1621 tggttctgtg ggatgattat ggtatgagca accctataca ggacgcactg aggctccaag
1681 aattggctga cacctgtcct ctgaccctaa attgtgacag gattgaaaac aaaggaaaag
1741 tgttcgacag tgatgccata attataacaa ccaaccttgc aaacccagca ccactagact
1801 atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca gacgcacctg
1861 acattgagaa ggctaagcgt gacttccctg gccaaccaga tatgtggaaa gaccatttca
1921 gaccagactt ctcacacatt aaacttcagc tggcaccaca gggaggtttt gacaaaaatg
1981 gcaacacccc acatggcaaa ggtgtggtga agtccctgac gattggttct ctgatcgcca
2041 gggcctctgg cttgctccac gagagaatgg atgaattcga gctccaaggc tctgacctgc
2101 caaccttcaa ttttgaccgc aacaaagtcg ccgccttcag acaattagca gctgaaaaca
2161 aatatggtct tatggacacg ctgagggtcg gcaaccaact gaaaaatgtt aagaccctgg
2221 atgagctgaa gcaggccata aagaacatca gtatcaagaa gtgtcagata gtgtataatg
2281 gatgcaccta taccatggaa tctgatggga ggggcaaggt tgtggttgaa agggtacaaa
2341 acgcaacagt tcaaaccaac aatgaacttg taggggcgct ccaccacctg agatctgcaa
2401 ggataaggta ctatgttaaa tgtttccaag aagccattta ctctctactc caaattgctg
2461 gtgcagcctt cgtcacctca cgcatcgtga ggcgcatgaa catatcaaac ctctggtcga
2521 agccacccat cgaggagggt gatgagcctg aagacagagg aggatgcccc aagcccaggg
2581 atgaagatga cctcactatt gactctagag acattaaagt ggaagggaag aagggcaaga
2641 acaagtctgg ccggggcaag aaacacacag ccttctcttc caagggcctc agtgatgaag
2701 agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca atagaggaat
2761 acctccaaga tagggacaga tactatgaag agcttgccat tgctaaggcc actgaggagg
2821 acttctgtga ggaggaggag atcaaaatcc gccagagaat cttccgaccc accaggaagc
2881 agcggaaaga ggaaagggcc acgcttgggc ttgtcacagg atcggaaatc agaaagagga
2941 atccagatga ctttaaacca aaagggaaat tgtgggctga tgacaacagg agtgtggatt
3001 acaatgagag gatagatttt gaggctcccc cgagtgtttg gtctaggata gtcaactttg
3061 gcacaggctg gggattctgg gtttctccaa gtctctttat aacttcaaca cacgtcatac
3121 caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatt cacaaatctg
3181 gagaattttg ccgcttgcgg tttccaaagc caattaggcc agacgtgagt gggatgatct
3241 tggaagaggg tgcccctgaa ggcactgttg tgactattct catcaaaagg acaacagggg
3301 agctgatgcc tcttgcagtt agaatgggga ctcatgccac aatgaaaatc caaggtagaa
3361 cggtgggtgg tcagatgggt atgcttctca ctggctcaaa tgctaaaagc atggatctag
3421 gcacaacgcc aggtgactgc ggatgtccat acatatacaa aaggggcaat gaccttgtgg
3481 tcattggggt gcacactgca gcagctcgtg gaggcaacac ggtcatatgt gccacacagg
3541 gaagtgaagg tgaagccact cttgaaggag gtgacaacaa gggtacctat tgtggagccc
3601 ccattttggg acctggcaat gcaccaaaat tgagcacaaa gacaaaattc tggagatcct
3661 ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg agagaccagc
3721 gcgtgaaggg aggcccatct ctgcaacaag ttatgagaga ccaacttaaa ccttttacag
3781 agcccagagg gaagccacca aacccaaatg tcttagagtc agcaaagaag actatcatca
3841 atgttctgga acaaaccatt gacccccctc aaaagtggtc atatgcccaa gcctgtgcat
3901 ccctcgacaa gacgacctcc agtggatacc cgcaccacgt ccggaagaat gactattgga
3961 gtggagaatc cttcacagga aaacttgcag atcaggcttc aaaagcaaat ctcatgtatg
4021 aggaaggcaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag ctcgtgaaaa
4081 ctgataaaat ttatggcaaa atcaagaaaa gactcctgtg gggttctgac ctctccacaa
4141 tgattcgatg cgccagagca tttggtggtc tcatggatga attcaaagca aattgtatca
4201 cactccctat cagagttggt atgaatatga atgaagatgg tcccataata tttgagaaac
4261 actccaggta caggtaccac tatgatgctg attactcccg ctgggactcc acacaacagc
4321 gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag ccacagctgg
4381 cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc gatttcaaga
4441 tcgctatcaa tgaaggccta ccatctggcg tgccttgcac ctcacaatgg aattctattg
4501 cccactggtt acttaccttg tgtgcccttt ctgaagtgac aggattaggt cctgatatca
4561 tacaagctaa ctccatgtac tctttctatg gtgatgatga gattgtgagc acagacataa
4621 aattggaccc agagaaattg accgcaaagc tcaaagaata tggccttaaa cccacccggc
4681 ccgacaaaac tgaggggccg ttggtgatta gtgaagacct gaatgggttg actttcctcc
4741 gccgaacagt cacccgtgat ccagcaggtt ggtttggaaa gttggaccaa aactccatcc
4801 tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag accatgatac
4861 cacacgcaca aagacctgtg cagctcatgg cactactagg tgaatcctcc ctacatggac
4921 cctcatttta cagcaaggtt agcaaattag tcatatctga acttaaagag ggaggaatgg
4981 atttttatgt gcccagacaa gagtcaatgt tcagatggat gaggttctca gatctaagca
5041 catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac
5101 gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaataa cgagaccctt
5161 cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca aaataacata
5221 attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt cacagtgtca
5281 cccagaaact ctcctggaga aattttatta aacttagagt tgggccctga tttgaaccct
5341 tatttggctc atttgtcaag gatgtacaat gggtatgctg gtggagtgga agttcaggtt
5401 ctcctggcag ggaacgcgtt cactgccgga aagatcctct tcgccgccgt cccgccaaat
5461 ttcccagtgg aattcttaag cccagcccag atcacaatgc tcccacattt aatagtagat
5521 gttaggactc ttgaaccaat tatgatccca ctccctgatg ttaggaatac attcttccat
5581 tatagtaacc agcctaacag ccgcatgaga ttagtggcta tgctctatac cccactcaga
5641 tctaatggct caggtgatga tgtctttact gtctcttgca gggttttgac taggcctact
5701 cctgattttg agttcactta tttagtgcca ccttctgttg aatctaaaac taagcctttt
5761 tccttaccta ttttaaccct ttctgagctc acaaattcga ggttcccagt ccccatcgat
5821 tcgcttttca ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg caggtgcaca
5881 cttgatggtg agttacaagg cacaacccag ttgctcccat ctggcatctg tgcattcaga
5941 ggacgggtga cagcacaaat taaccaacgt gacaggtggc acatgcaact gcaaaacctc
6001 aatggtacaa catatgaccc aactgatgat gtgccagccc cgctgggtac acctgacttc
6061 aagggcgtcg tgtttgggat ggtaagccaa agaaatgtgg gtaatgacgc gcctggctca
6121 accagagccc aacaggcgtg ggtttcaacc tatagccccc aatttgtccc caaattaggt
6181 tctgtcaatc ttagaattag tgataatgat gatttccaat tccagccgac aaaattcaca
6241 ccagtgggcg tcaatgatga cgatgatggc cacccgttca gacaatggga attaccaaac
6301 tattcagggg agcttacctt gaatatgaat cttgcccccc cagttgctcc aaattttcct
6361 ggtgaacaat tgttattctt cagatctttc gtgccatgct caggaggtta caaccaaggt
6421 attatagatt gtcttattcc ccaagaatgg atccaacact tctatcagga atcagcaccc
6481 tcccagtcag acgtggccct aatcaggtat gtcaatcctg acacgggacg aacactgttt
6541 gaagcaaaat tgcacagatc tggttacatt actgtggctc actctggaga ctatcctctt
6601 gttgttccgg ctaatggaca ctttagattt gattcttggg taaatcagtt ttactcactc
6661 gccccaatgg gaactgggaa tgggcgaagg agggctcagt aatggctggg gctttcattg
6721 caggattggc aggcgacatg ctcacgtcat ctgtgggctc ccttgtgaac gcaggggcaa
6781 acgccatcaa ccaaaagata gactttgaaa acaacaaaca actccagtct gcttcctttc
6841 agcatgataa agagatgctc caagcgcagg tgaaggcaac caagcagctg caatctgaga
6901 tgatagccct aaaacagggg gttttggccg caggcggctt ttcccccact gatgcagcaa
6961 ggggagccat tggtgcaccc atgacaaagg tgcttgactg gtctggcact cgatactggg
7021 cgcccaactc cacaaagaca actggttatt cgggacaatt cacctcttca cctgtgcaca
7081 tgtctagccc aaatgctcca caatcaaaac ctgcaaagcc taggtctcta gctccttcct
7141 cttcttctag cagtgtctat agtatgtata ctcaatctac tcatttaaca tctggctctt
7201 ctagtaatgc ttcttctgcc tctacaaaat tgacaaattt aagctctggc tcctctcaaa
7261 acagaacagc agagtgggta aatcaacaga gaagtcttag ccctttcatg agtggcgcac
7321 ttaacatctc acatgtcacg ccaccctcaa gtagggcttc cagttctggg acggtctcga
7381 ccgtgcccaa ggaagttttg gactcctgga cgtctgcgtt taacacacac agacagccgc
7441 tcttcgcaca cctcagagtg aggggggagt cacgtgttta gtgaaaagaa ataattggct
7501 ataatttgat ttctttctaa attcggctaa tttgtgtctt ttaaaaaaa
//