Typing tool
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Typing tool
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Complete norovirus genomes
| LC369238 | GII.17 | |
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| GII.P17 |
ORF1: 1..5107
ORF2: 5088..6710
ORF3: 6710..7489
LOCUS LC369238 7556 bp RNA linear VRL 28-JUN-2023
DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/MI-89 genomic RNA,
nearly complete genome.
ACCESSION LC369238
VERSION LC369238.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y.,
Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N.,
Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R.,
Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N.,
Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and
Kimura,H.
TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase
Regions of Human Norovirus GII.P17-GII.17 in 2013-2017
JOURNAL Front Microbiol 10, 2189 (2019)
PUBMED 31611853
REMARK DOI:10.3389/fmicb.2019.02189
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7556)
AUTHORS Doan,Y.H., Katayama,K. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of
Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
Japan
FEATURES Location/Qualifiers
source 1..7556
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="NoV/Hu/JP/2015/GII.P17-GII.17/MI-89"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Japan:Miyagi"
/collection_date="2015"
/note="genotype: GII.P17-GII.17"
gene <1..5107
/gene="POL"
CDS <1..5107
/gene="POL"
/note="start codon is not identified"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBD04686.1"
/translation="KMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARS
KQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGVVYKVGEGVSGLPDLTTVVQ
PDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAA
ISLAKIEITPLSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDII
GKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKL
STKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAR
ELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELAD
TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSGRMDFLVYADAPDI
EKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIA
RASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVK
TLDVLKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVERVQNATVQTNNELVGALHH
LRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRG
GCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER
NGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLG
LVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWV
SPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAP
EGTVVTILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTP
GDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPI
LGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDQRVKGGPSLQQVMRDQLKPFT
EPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKND
YWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGS
DLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSR
WDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVP
CTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAK
LKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTR
GPNHEDPSETMIPHAQRPVQLMALLSESSLHGPSFYSKVSKLVISELKEGGMDFYVPR
QESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5088..6710
/gene="VP1"
CDS 5088..6710
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBD04687.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6710..7489
/gene="VP2"
CDS 6710..7489
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBD04688.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTAGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gaagatggcg tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa
61 ggaaaaatct tcaagtgaca gcttgtttgc taacatgtct gttactttta agaaagccct
121 cggggcgcgg tctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag
181 gccaccgaca ccggaattgg tgaagagaat acctccaccc ccacctaatg gcgaggatga
241 accaggggta gtgtacaagg tgggagaggg tgtgtctggg ctgcccgacc taacaactgt
301 ggtacaacct gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt
361 cggcgaagct aaagaaccgc tgcctggctc cattctggaa atgtgggatg gtgagatcta
421 ccactatggg ctgtatgttg agcgggggca tgtgctcgga gtacacaagc cacctgctgc
481 aataagcctt gccaaaattg aaataacacc gctgtctctc tactggagag tggtctacac
541 tccccagtat ttgatagctc caggaactct taagaacttg agtggagaga ctttcccata
601 cacggccttt gacaacaact gttatgcctt ctgttgttgg gtcctagacc tcaacgactc
661 ctggcttagc aggagaatga tccaaagaac aactggattc ttcaaacctt atcaggattg
721 gaacagaaaa cccttaccaa ccatggatga accgaaaatc aagaaggccg cgaatgctgt
781 tttatgcgct ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag
841 accactgaac attcttaata tactggcaac ctgcgattgg acttttgcag gcatagtgga
901 atccttgatc cttcttgctg aactctttgg ggtgttctgg acacccccag atgtgtctgc
961 gatgattgct cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga
1021 acttgtgccc gtggtgatgg gaggaatagg tttggtgtta ggattcacca aagaaaagat
1081 cggcaagatg ctatcatcag ctgcaaccac acttagggcc tgcaaggatc taggatctta
1141 tggattggag atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa
1201 cgaactagcc atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagaaaa
1261 caatcacatg accacccttc tcaaggataa agacagcctg gccacataca tgaggactct
1321 tgacttggaa gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacattgt
1381 gggtacaata aacgcattat tggctaggat agcagccgcc aggtcactgg tccacaaggc
1441 taaggaggag ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg
1501 tataggaaag acccatctgg ccagagagct agccaagaaa gttgcgtcaa cactgtcagg
1561 cgaccaaagg attggactgg tacctagaaa tggcgtcgac cattgggacg cctacaaggg
1621 agaaagggtg gttctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag
1681 gctccaagaa ttggctgaca cctgtcctct gaccctaaat tgtgacagga ttgaaaacaa
1741 aggaaaagtg ttcgacagtg atgccataat tataacaacc aaccttgcaa acccagcacc
1801 actagactat gtcaactttg aggcctgctc tggacgcatg gacttcttgg tgtatgcaga
1861 cgcacctgac attgagaagg ctaagcgtga cttccctggc caaccagata tgtggaaaga
1921 ccatttcaga ccagacttct cacacattaa acttcagctg gcaccacagg gaggttttga
1981 caaaaatggc aacaccccac atggcaaagg tgtggtgaag tccctgacga ttggttctct
2041 gatcgccagg gcctctggct tgctccacga gagaatggat gaattcgagc tccaaggctc
2101 tgacctgcca accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc
2161 ggaaaacaaa tatggtctta tggacacgct gagggtcggc aaccaactga aaaatgttaa
2221 gaccctggat gtgctgaagc aggccataaa gaacatcagt atcaagaagt gtcagatagt
2281 gtataatgga tgcacctata ccatggaatc tgatgggagg ggcaaggttg tggttgaaag
2341 ggtacaaaac gcaacagttc aaaccaacaa tgaacttgta ggggcgctcc accacctgag
2401 atctgcaagg ataaggtact atgttaaatg tttccaagaa gccatttact ctctactcca
2461 aattgctggt gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tatcaaacct
2521 ctggtcgaag ccacccatcg aggagggtga tgagcctgaa gacagaggag gatgccccaa
2581 gcccagggat gaagatgacc tcactattga ctctagagac attaaagtgg aagggaagaa
2641 gggcaagaac aagtctggcc ggggcaagaa acacacagcc ttctcttcca agggcctcag
2701 tgatgaagag tacgatgagt acaagagaat cagagaggag aggaatggca aatactcaat
2761 agaggaatac ctccaagata gggacagata ctatgaagag cttgccattg ctaaggccac
2821 tgaggaggac ttctgtgagg aggaggagat caaaatccgc cagagaatct tccgacccac
2881 caggaagcag cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag
2941 aaagaggaat ccagatgact ttaaaccaaa agggaaattg tgggctgatg acaacaggag
3001 tgtggattac aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt
3061 caactttggc acaggctggg gattctgggt ttctccaagt ctctttataa cttcaacaca
3121 cgtcatacca aaaggaatca ctgaggcctt tggagtgccc ataaaccaaa tccaaattca
3181 caaatctgga gaattttgcc gcttgcggtt tccaaagcca attaggccag acgtgagtgg
3241 gatgatcttg gaagagggtg cccctgaagg cactgttgtg actattctca tcaaaaggac
3301 aacaggggag ctgatgcctc ttgcagttag aatggggact catgccacaa tgaaaatcca
3361 aggtagaacg gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat
3421 ggatctaggc acaacgccag gtgactgcgg atgtccatac atatacaaaa ggggcaatga
3481 ccttgtggtc attggggtgc acactgcagc agctcgtgga ggcaacacgg tcatatgtgc
3541 cacacaggga agtgaaggtg aagccactct tgaaggaggt gacaacaagg gtacctattg
3601 tggagccccc attttgggac ctggcaatgc accaaaattg agcacaaaga caaaattctg
3661 gagatcctct aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag
3721 agaccagcgc gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc
3781 ttttacagag cccagaggga agccaccaaa cccaaatgtc ttagagtcag caaagaagac
3841 tatcatcaat gttctggaac aaaccattga cccccctcaa aagtggtcat atgcccaagc
3901 ctgtgcatcc ctcgacaaga cgacctccag tggatacccg caccacgtcc ggaagaatga
3961 ctattggagt ggagaatcct tcacaggaaa acttgcagat caggcttcaa aagcaaatct
4021 catgtatgag gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct
4081 cgtgaaaact gataaaattt atggcaaaat caagaaaaga ctcctgtggg gttctgacct
4141 ctccacaatg attcgatgcg ccagagcatt tggtggtctc atggatgaat tcaaagcaaa
4201 ttgtatcaca ctccctatca gagttggtat gaatatgaat gaagatggtc ccataatatt
4261 tgagaaacac tccaggtaca ggtatcacta tgatgctgat tactcccgct gggactccac
4321 acaacagcgg gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc
4381 acagctggca caaatagtgg cagaggacct gctgtcacca agtgtggttg atgtgggcga
4441 tttcaagatc gctatcaatg aaggcctacc atctggcgtg ccttgcacct cacagtggaa
4501 ttctattgcc cactggttac ttaccttgtg tgccctttct gaagtgacag gattaggtcc
4561 tgatatcata caagctaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac
4621 agacataaaa ttggacccag agaaattgac cgcaaagctc aaagaatatg gccttaaacc
4681 cacccggccc gacaaaactg aggggccgtt ggtgattagt gaagacctga atgggttgac
4741 tttcctccgc cgaacagtca cccgtgatcc agcaggttgg tttggaaagt tggaccaaaa
4801 ctccatcctc aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac
4861 catgatacca cacgcacaaa gacctgtgca gctcatggca ctactaagtg aatcctccct
4921 acatggaccc tcattttaca gcaaggttag caaattagtc atatctgaac ttaaagaggg
4981 aggaatggat ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga
5041 tctaagcaca tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
5101 cgaatgacgc cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaataacg
5161 agacccttcc cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa
5221 ataacataat tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca
5281 cagtgtcacc cagaaactct cctggagaaa ttttattaaa cttagagttg ggccctgatt
5341 tgaatcctta tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag
5401 ttcaggttct cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc
5461 cgccaaattt cccagtggaa ttcttaagcc cagcccagat cacaatgctc ccacatttaa
5521 tagtagatgt taggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat
5581 tcttccatta tagtaaccag cctaacagcc gcatgagatt agtggctatg ctctataccc
5641 cactcagatc taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta
5701 ggcctactcc tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaaaacta
5761 agcctttttc cttacctatt ttaacccttt ctgagctcac aaattcgagg ttcccagtcc
5821 ccatcgattc gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca
5881 ggtgcacact tgatggtgag ttacaaggca caacccagtt gctcccatct ggcatctgtg
5941 cattcagagg acgggtgaca gcacaaatta accaacgtga caggtggcac atgcaactgc
6001 aaaacctcaa tggtacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac
6061 ctgacttcaa gggcgtcgtg tttgggatgg taagccaaag aaatgtgggt aatgatgcgc
6121 ctggctcaac cagagcccaa caggcgtggg tttcaaccta tagcccccaa tttgtcccca
6181 aattaggttc tgtcaatctt agaattagtg ataatgatga tttccaattc cagccgacaa
6241 aattcacacc agtgggcgtc aatgatgacg atgatggcca cccgttcaga caatgggaat
6301 taccaaacta ttcaggggag cttaccttga atatgaatct tgccccccca gttgctccaa
6361 attttcctgg tgaacaattg ttattcttca gatctttcgt gccatgctca ggaggttaca
6421 accaaggtat tatagattgt cttattcccc aagaatggat ccaacacttc tatcaggaat
6481 cagcaccctc ccagtcagac gtggccctaa tcaggtatgt caatcctgac acgggacgaa
6541 cactgtttga agcaaaattg cacagatctg gttacattac tgtggctcac tctggagact
6601 atcctcttgt tgttccggct aatggacact ttagatttga ttcttgggta aatcagtttt
6661 actcactcgc cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggggc
6721 tttcattgca ggattggcag gcgacatgct cacgtcatct gtgggctccc ttgtgaacgc
6781 aggggcaaac gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc
6841 ttcctttcag catgataaag agatgctcca agcgcaggtg aaggcaacca agcagctgca
6901 atctgagatg atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga
6961 tgcagcaagg ggagccattg gtgcacccat gacaaaggtg cttgactggt ctggcactcg
7021 atactgggcg cccaactcca caaagacaac tggttattcg ggacaattca cctcttcacc
7081 tgtgcacatg tctagcccaa atgctccaca atcaaaacct gcaaagccta ggtctctagc
7141 tccttcctct tcttctagca gtgtctatag tatgtatact caatctacgc atttaacagc
7201 tggctcttct agtaatgctt cttctgcctc tacaaaattg acaaatttaa gctctggctc
7261 ctctcaaaac agaacagcag agtgggtaaa tcaacagaga agtcttagcc ctttcatgag
7321 tggcgcactt aacatctcac atgtcacgcc accctcaagt agggcttcca gttctgggac
7381 ggtctcgacc gtgcccaagg aagttttgga ctcctggacg tctgcgttta acacacacag
7441 acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat
7501 aattggctat aatttgattt ctttctaaat tcggctaatt tgtgtctttt aaaaaa
//